RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RNF135Q8IUD6 432 aa9.02□□□□□ -0.97
LIMA1-205ENST00000550592 TRMT44Q8IYL2 757 aaKnown RBP9.02□□□□□ -0.97
LIMA1-205ENST00000550592 WNT7BP56706 349 aa9.01□□□□□ -0.97
LIMA1-205ENST00000550592 MAP7D1Q3KQU3 841 aa9.01□□□□□ -0.97
LIMA1-205ENST00000550592 CDCA8Q53HL2 280 aa9□□□□□ -0.97
LIMA1-205ENST00000550592 PLPP7Q8NBV4 271 aa9□□□□□ -0.97
LIMA1-205ENST00000550592 GIGYF1O75420 1035 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-205ENST00000550592 CSB-PGBD3P0DP91 1061 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 SKOR1P84550 965 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 TRIM26Q12899 539 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-205ENST00000550592 MMRN1Q13201 1228 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 IFFO2Q5TF58 517 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 TRAF7Q6Q0C0 670 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 CDV3Q9UKY7 258 aaKnown RBP8.99□□□□□ -0.97
LIMA1-205ENST00000550592 USTQ9Y2C2 406 aa8.99□□□□□ -0.97
LIMA1-205ENST00000550592 ESPNB1AK53 854 aa8.98□□□□□ -0.97
LIMA1-205ENST00000550592 VARSP26640 1264 aaKnown RBP8.98□□□□□ -0.97
LIMA1-205ENST00000550592 TSGA10IPQ3SY00 556 aa8.98□□□□□ -0.97
LIMA1-205ENST00000550592 RNF20Q5VTR2 975 aa8.98□□□□□ -0.97
LIMA1-205ENST00000550592 DEPDC4Q8N2C3 294 aa8.98□□□□□ -0.97
LIMA1-205ENST00000550592 SLC10A4Q96EP9 437 aa8.98□□□□□ -0.97
LIMA1-205ENST00000550592 CD2BP2O95400 341 aaKnown RBP8.97□□□□□ -0.97
LIMA1-205ENST00000550592 NCOA4Q13772 614 aa8.97□□□□□ -0.97
LIMA1-205ENST00000550592 ELOAQ14241 798 aaKnown RBP8.97□□□□□ -0.97
LIMA1-205ENST00000550592 NBPF20Q3BBV1 942 aa8.97□□□□□ -0.97
LIMA1-205ENST00000550592 CCDC125Q86Z20 511 aa8.97□□□□□ -0.97
LIMA1-205ENST00000550592 MKRN1Q9UHC7 482 aaKnown RBP8.97□□□□□ -0.97
LIMA1-205ENST00000550592 SEPT12Q8IYM1 358 aa8.96□□□□□ -0.98
LIMA1-205ENST00000550592 KCTD17Q8N5Z5 321 aa8.96□□□□□ -0.98
LIMA1-205ENST00000550592 CCDC85AQ96PX6 553 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-205ENST00000550592 ATP5J2-PTCD1G3V325 749 aa8.95□□□□□ -0.98
LIMA1-205ENST00000550592 EML3Q32P44 896 aa8.95□□□□□ -0.98
LIMA1-205ENST00000550592 LIAT1Q6ZQX7 453 aa8.95□□□□□ -0.98
LIMA1-205ENST00000550592 MAP4K5Q9Y4K4 846 aa8.95□□□□□ -0.98
LIMA1-205ENST00000550592 FAM196BA6NMK8 535 aa8.94□□□□□ -0.98
LIMA1-205ENST00000550592 EMID1Q96A84 441 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-205ENST00000550592 DOLKQ9UPQ8 538 aa8.94□□□□□ -0.98
LIMA1-205ENST00000550592 TMEM88BA6NKF7 163 aa8.93□□□□□ -0.98
LIMA1-205ENST00000550592 RC3H1Q5TC82 1133 aaKnown RBP8.93□□□□□ -0.98
LIMA1-205ENST00000550592 KCTD15Q96SI1 283 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-205ENST00000550592 RASA1P20936 1047 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 PTK7Q13308 1070 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 CRTC2Q53ET0 693 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-205ENST00000550592 LARP1Q6PKG0 1096 aaKnown RBP8.92□□□□□ -0.98
LIMA1-205ENST00000550592 MPNDQ8N594 471 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 EHBP1Q8NDI1 1231 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 CDK15Q96Q40 435 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 ZMIZ1Q9ULJ6 1067 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 NOD1Q9Y239 953 aa8.92□□□□□ -0.98
LIMA1-205ENST00000550592 ZBTB7CA1YPR0 619 aa8.91□□□□□ -0.98
LIMA1-205ENST00000550592 TRIM50Q86XT4 487 aa8.91□□□□□ -0.98
LIMA1-205ENST00000550592 CDCA7Q9BWT1 371 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-205ENST00000550592 NOVA2Q9UNW9 492 aaKnown RBP8.91□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L15C9J2P7 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L10C9JJH3 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L13C9JLJ4 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L12C9JPN9 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L11C9JVI0 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L21D6R901 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L18D6R9N7 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L22D6RA61 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L17D6RBQ6 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L19D6RCP7 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L20D6RJB6 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 SIAH2O43255 324 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP17L24Q0WX57 530 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 USP4Q13107 963 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 VASH1Q7L8A9 365 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-205ENST00000550592 OGFOD1Q8N543 542 aa8.9□□□□□ -0.98
LIMA1-205ENST00000550592 CARNS1A5YM72 827 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 ZBTB7BO15156 539 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-205ENST00000550592 BRD1O95696 1058 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 SLC19A1P41440 591 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 ATP1A2P50993 1020 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 CLDN10P78369 228 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 OXLD1Q5BKU9 147 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 TMEM164Q5U3C3 297 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 LARGE2Q8N3Y3 721 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 SIRT1Q96EB6 747 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 PCDHB11Q9Y5F2 797 aa8.89□□□□□ -0.99
LIMA1-205ENST00000550592 GRM5P41594 1212 aa8.88□□□□□ -0.99
LIMA1-205ENST00000550592 INTS6LQ5JSJ4 861 aaKnown RBP8.88□□□□□ -0.99
LIMA1-205ENST00000550592 AEBP1Q8IUX7 1158 aa8.88□□□□□ -0.99
LIMA1-205ENST00000550592 ANKMY2Q8IV38 441 aa8.88□□□□□ -0.99
LIMA1-205ENST00000550592 STK32AQ8WU08 396 aa8.88□□□□□ -0.99
LIMA1-205ENST00000550592 DNAAF2Q9NVR5 837 aaKnown RBP8.88□□□□□ -0.99
LIMA1-205ENST00000550592 PODXL2Q9NZ53 605 aa8.88□□□□□ -0.99
LIMA1-205ENST00000550592 WNT7AO00755 349 aa8.87□□□□□ -0.99
LIMA1-205ENST00000550592 DKK1O94907 266 aa8.87□□□□□ -0.99
LIMA1-205ENST00000550592 FAM200AQ8TCP9 573 aa8.87□□□□□ -0.99
LIMA1-205ENST00000550592 PCDHGA11Q9Y5H2 935 aa8.87□□□□□ -0.99
LIMA1-205ENST00000550592 ERVH48-1M5A8F1 160 aa8.86□□□□□ -0.99
LIMA1-205ENST00000550592 GTF2IP78347 998 aa8.86□□□□□ -0.99
LIMA1-205ENST00000550592 ARID5BQ14865 1188 aa8.86□□□□□ -0.99
LIMA1-205ENST00000550592 SPRYD7Q5W111 196 aa8.86□□□□□ -0.99
LIMA1-205ENST00000550592 RAB15P59190 212 aa8.85□□□□□ -0.99
LIMA1-205ENST00000550592 FAM69CQ0P6D2 419 aa8.85□□□□□ -0.99
LIMA1-205ENST00000550592 DPYDQ12882 1025 aa8.85□□□□□ -0.99
LIMA1-205ENST00000550592 SIX5Q8N196 739 aa8.85□□□□□ -0.99
LIMA1-205ENST00000550592 PATL2C9JE40 543 aaKnown RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms