RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 HOXC9P31274 260 aa28.69■■■□□ 2.18
VPS29-206ENST00000549578 IP6K1Q92551 441 aa28.69■■■□□ 2.18
VPS29-206ENST00000549578 BTG4Q9NY30 223 aa28.69■■■□□ 2.18
VPS29-206ENST00000549578 RTL1A6NKG5 1358 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 RGPD5Q99666 1765 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 SLIT2O94813 1529 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 ABCC6O95255 1503 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 ANP32CO43423 234 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 MTHFSP49914 203 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 DIEXFQ68CQ4 756 aaKnown RBP28.68■■■□□ 2.18
VPS29-206ENST00000549578 FLT4P35916 1363 aa28.68■■■□□ 2.18
VPS29-206ENST00000549578 AFF2P51816 1311 aa28.66■■■□□ 2.18
VPS29-206ENST00000549578 KIF24Q5T7B8 1368 aa28.66■■■□□ 2.18
VPS29-206ENST00000549578 FNBP4Q8N3X1 1017 aaPredicted RBP28.66■■■□□ 2.18
VPS29-206ENST00000549578 NWD2Q9ULI1 1742 aa28.65■■■□□ 2.18
VPS29-206ENST00000549578 HSP90AB2PQ58FF8 381 aa28.65■■■□□ 2.18
VPS29-206ENST00000549578 BLMP54132 1417 aaPredicted RBP28.64■■■□□ 2.17
VPS29-206ENST00000549578 COL5A2P05997 1499 aaPredicted RBP28.63■■■□□ 2.17
VPS29-206ENST00000549578 CDK12Q9NYV4 1490 aaPredicted RBP28.63■■■□□ 2.17
VPS29-206ENST00000549578 MYBBP1AQ9BQG0 1328 aaKnown RBP28.63■■■□□ 2.17
VPS29-206ENST00000549578 NRAPQ86VF7 1730 aa28.63■■■□□ 2.17
VPS29-206ENST00000549578 BCL9LQ86UU0 1499 aa28.63■■■□□ 2.17
VPS29-206ENST00000549578 STRN4Q9NRL3 753 aa28.62■■■□□ 2.17
VPS29-206ENST00000549578 USP21Q9UK80 565 aa28.62■■■□□ 2.17
VPS29-206ENST00000549578 INSRP06213 1382 aa28.61■■■□□ 2.17
VPS29-206ENST00000549578 LTV1Q96GA3 475 aaPredicted RBP28.61■■■□□ 2.17
VPS29-206ENST00000549578 EVA1CP58658 441 aa28.59■■■□□ 2.17
VPS29-206ENST00000549578 UNC5CLQ8IV45 518 aa28.59■■■□□ 2.17
VPS29-206ENST00000549578 ANKRD24Q8TF21 1146 aa28.59■■■□□ 2.17
VPS29-206ENST00000549578 ERBB3P21860 1342 aa28.58■■■□□ 2.17
VPS29-206ENST00000549578 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.57■■■□□ 2.16
VPS29-206ENST00000549578 CSB-PGBD3P0DP91 1061 aa28.55■■■□□ 2.16
VPS29-206ENST00000549578 LARP1Q6PKG0 1096 aaKnown RBP28.55■■■□□ 2.16
VPS29-206ENST00000549578 PHF23Q9BUL5 403 aaPredicted RBP28.55■■■□□ 2.16
VPS29-206ENST00000549578 WDR17Q8IZU2 1322 aa28.54■■■□□ 2.16
VPS29-206ENST00000549578 COL3A1P02461 1466 aaPredicted RBP28.54■■■□□ 2.16
VPS29-206ENST00000549578 EIF4A2Q14240 407 aaKnown RBP28.53■■■□□ 2.16
VPS29-206ENST00000549578 CFAP53Q96M91 514 aa28.53■■■□□ 2.16
VPS29-206ENST00000549578 RGS17Q9UGC6 210 aaPredicted RBP28.52■■■□□ 2.16
VPS29-206ENST00000549578 ZNF772Q68DY9 489 aaPredicted RBP28.51■■■□□ 2.15
VPS29-206ENST00000549578 TOM1L2Q6ZVM7 507 aa28.51■■■□□ 2.15
VPS29-206ENST00000549578 RGPD2P0DJD1 1756 aa28.5■■■□□ 2.15
VPS29-206ENST00000549578 VPS72Q15906 364 aa28.5■■■□□ 2.15
VPS29-206ENST00000549578 CCDC9Q9Y3X0 531 aaKnown RBP28.5■■■□□ 2.15
VPS29-206ENST00000549578 ATRNO75882 1429 aa28.49■■■□□ 2.15
VPS29-206ENST00000549578 CRB1P82279 1406 aa28.49■■■□□ 2.15
VPS29-206ENST00000549578 NLRP2Q9NX02 1062 aa28.49■■■□□ 2.15
VPS29-206ENST00000549578 FAM208AQ9UK61 1670 aaKnown RBP28.49■■■□□ 2.15
VPS29-206ENST00000549578 DIAPH1O60610 1272 aaKnown RBP28.48■■■□□ 2.15
VPS29-206ENST00000549578 IL13P35225 146 aa28.48■■■□□ 2.15
VPS29-206ENST00000549578 QTRT2Q9H974 415 aaKnown RBP28.48■■■□□ 2.15
VPS29-206ENST00000549578 TRPC5Q9UL62 973 aaPredicted RBP28.48■■■□□ 2.15
VPS29-206ENST00000549578 USP35Q9P2H5 1018 aa28.48■■■□□ 2.15
VPS29-206ENST00000549578 NBPF6Q5VWK0 638 aa28.46■■■□□ 2.15
VPS29-206ENST00000549578 NBPF4Q96M43 638 aa28.46■■■□□ 2.15
VPS29-206ENST00000549578 SPATA31A5Q5VU36 1347 aa28.46■■■□□ 2.15
VPS29-206ENST00000549578 SPATA31A7Q8IWB4 1347 aa28.46■■■□□ 2.15
VPS29-206ENST00000549578 CCDC184Q52MB2 194 aa28.45■■■□□ 2.15
VPS29-206ENST00000549578 EYA1Q99502 592 aa28.45■■■□□ 2.15
VPS29-206ENST00000549578 USHBP1Q8N6Y0 703 aa28.44■■■□□ 2.14
VPS29-206ENST00000549578 CARD10Q9BWT7 1032 aa28.44■■■□□ 2.14
VPS29-206ENST00000549578 SPATA31A1Q5TZJ5 1347 aa28.44■■■□□ 2.14
VPS29-206ENST00000549578 MIER1Q8N108 512 aa28.43■■■□□ 2.14
VPS29-206ENST00000549578 GJD4Q96KN9 370 aaPredicted RBP28.43■■■□□ 2.14
VPS29-206ENST00000549578 RGPD1P0DJD0 1748 aa28.42■■■□□ 2.14
VPS29-206ENST00000549578 GLI3P10071 1580 aa28.42■■■□□ 2.14
VPS29-206ENST00000549578 POTEAQ6S8J7 498 aa28.42■■■□□ 2.14
VPS29-206ENST00000549578 U2SURPO15042 1029 aaKnown RBP28.41■■■□□ 2.14
VPS29-206ENST00000549578 IGSF1Q8N6C5 1336 aa28.4■■■□□ 2.14
VPS29-206ENST00000549578 TCP11L2Q8N4U5 519 aa28.38■■■□□ 2.13
VPS29-206ENST00000549578 MRS2Q9HD23 443 aa28.38■■■□□ 2.13
VPS29-206ENST00000549578 NUDCQ9Y266 331 aa28.38■■■□□ 2.13
VPS29-206ENST00000549578 NCAPD2Q15021 1401 aa28.37■■■□□ 2.13
VPS29-206ENST00000549578 FAM98CQ17RN3 349 aaKnown RBP28.36■■■□□ 2.13
VPS29-206ENST00000549578 AEBP1Q8IUX7 1158 aa28.36■■■□□ 2.13
VPS29-206ENST00000549578 RBM6P78332 1123 aaKnown RBP28.35■■■□□ 2.13
VPS29-206ENST00000549578 SULT6B1Q6IMI4 303 aa28.35■■■□□ 2.13
VPS29-206ENST00000549578 THRAP3Q9Y2W1 955 aaKnown RBP28.35■■■□□ 2.13
VPS29-206ENST00000549578 HMOX1P09601 288 aa28.34■■■□□ 2.13
VPS29-206ENST00000549578 U2AF1L5P0DN76 240 aaPredicted RBP28.33■■■□□ 2.13
VPS29-206ENST00000549578 U2AF1Q01081 240 aaKnown RBP eCLIP28.33■■■□□ 2.13
VPS29-206ENST00000549578 WNK3Q9BYP7 1800 aa28.33■■■□□ 2.13
VPS29-206ENST00000549578 RXRBP28702 533 aa28.33■■■□□ 2.13
VPS29-206ENST00000549578 BARGINQ6ZT62 677 aa28.33■■■□□ 2.13
VPS29-206ENST00000549578 MEGF6O75095 1541 aa28.31■■■□□ 2.12
VPS29-206ENST00000549578 DISP2A7MBM2 1401 aa28.31■■■□□ 2.12
VPS29-206ENST00000549578 KDRP35968 1356 aa28.3■■■□□ 2.12
VPS29-206ENST00000549578 CCER2I3L3R5 266 aa28.29■■■□□ 2.12
VPS29-206ENST00000549578 IL2RBP14784 551 aa28.29■■■□□ 2.12
VPS29-206ENST00000549578 A0A0G2JS52 829 aa28.28■■■□□ 2.12
VPS29-206ENST00000549578 MYT1Q01538 1121 aa28.28■■■□□ 2.12
VPS29-206ENST00000549578 WDR43Q15061 677 aaKnown RBP eCLIP28.28■■■□□ 2.12
VPS29-206ENST00000549578 RAPGEF4Q8WZA2 1011 aa28.28■■■□□ 2.12
VPS29-206ENST00000549578 THSD7AQ9UPZ6 1657 aa28.27■■■□□ 2.12
VPS29-206ENST00000549578 ONECUT3O60422 494 aaPredicted RBP28.26■■■□□ 2.11
VPS29-206ENST00000549578 PARP4Q9UKK3 1724 aaKnown RBP28.25■■■□□ 2.11
VPS29-206ENST00000549578 TATP17735 454 aaPredicted RBP28.25■■■□□ 2.11
VPS29-206ENST00000549578 PNISRQ8TF01 805 aaKnown RBP28.25■■■□□ 2.11
VPS29-206ENST00000549578 RSPH6AQ9H0K4 717 aa28.25■■■□□ 2.11
VPS29-206ENST00000549578 CDCA7Q9BWT1 371 aaPredicted RBP28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms