RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 ONECUT3O60422 494 aaPredicted RBP17.91■□□□□ 0.46
PRPF40B-210ENST00000549547 CARD14Q9BXL6 1004 aa17.91■□□□□ 0.46
PRPF40B-210ENST00000549547 CRB1P82279 1406 aa17.9■□□□□ 0.46
PRPF40B-210ENST00000549547 ANKRD26Q9UPS8 1709 aa17.9■□□□□ 0.46
PRPF40B-210ENST00000549547 C11orf95C9JLR9 678 aaPredicted RBP17.9■□□□□ 0.46
PRPF40B-210ENST00000549547 BRWD3Q6RI45 1802 aa17.9■□□□□ 0.46
PRPF40B-210ENST00000549547 KIF7Q2M1P5 1343 aa17.9■□□□□ 0.46
PRPF40B-210ENST00000549547 A0A0G2JS52 829 aa17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 MYT1Q01538 1121 aa17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 FAM98CQ17RN3 349 aaKnown RBP17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 SEPT12Q8IYM1 358 aa17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 GGNBP2Q9H3C7 697 aa17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 THSD7AQ9UPZ6 1657 aa17.89■□□□□ 0.45
PRPF40B-210ENST00000549547 LARP1Q6PKG0 1096 aaKnown RBP17.88■□□□□ 0.45
PRPF40B-210ENST00000549547 PANK3Q9H999 370 aa17.88■□□□□ 0.45
PRPF40B-210ENST00000549547 THRAP3Q9Y2W1 955 aaKnown RBP17.88■□□□□ 0.45
PRPF40B-210ENST00000549547 WDR17Q8IZU2 1322 aa17.88■□□□□ 0.45
PRPF40B-210ENST00000549547 BLMP54132 1417 aaPredicted RBP17.88■□□□□ 0.45
PRPF40B-210ENST00000549547 AXIN2Q9Y2T1 843 aa17.87■□□□□ 0.45
PRPF40B-210ENST00000549547 FAM208AQ9UK61 1670 aaKnown RBP17.87■□□□□ 0.45
PRPF40B-210ENST00000549547 CSB-PGBD3P0DP91 1061 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 BARGINQ6ZT62 677 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 TOM1L2Q6ZVM7 507 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 TCP11L2Q8N4U5 519 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 RTL1A6NKG5 1358 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 NSD2O96028 1365 aa17.86■□□□□ 0.45
PRPF40B-210ENST00000549547 CCDC7Q96M83 1385 aa17.85■□□□□ 0.45
PRPF40B-210ENST00000549547 WNK3Q9BYP7 1800 aa17.85■□□□□ 0.45
PRPF40B-210ENST00000549547 USP35Q9P2H5 1018 aa17.85■□□□□ 0.45
PRPF40B-210ENST00000549547 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
PRPF40B-210ENST00000549547 PARP4Q9UKK3 1724 aaKnown RBP17.84■□□□□ 0.45
PRPF40B-210ENST00000549547 ERBB3P21860 1342 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 MAP3K19Q56UN5 1328 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 ZEB1P37275 1124 aaPredicted RBP17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 AMPHP49418 695 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 KRT27Q7Z3Y8 459 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 IP6K1Q92551 441 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 KNSTRNQ9Y448 316 aa17.83■□□□□ 0.44
PRPF40B-210ENST00000549547 CARD10Q9BWT7 1032 aa17.82■□□□□ 0.44
PRPF40B-210ENST00000549547 WASHC2AQ641Q2 1341 aa17.81■□□□□ 0.44
PRPF40B-210ENST00000549547 ANKRD24Q8TF21 1146 aa17.81■□□□□ 0.44
PRPF40B-210ENST00000549547 CDCA7Q9BWT1 371 aaPredicted RBP17.81■□□□□ 0.44
PRPF40B-210ENST00000549547 MAP2P11137 1827 aaKnown RBP17.8■□□□□ 0.44
PRPF40B-210ENST00000549547 UPF1Q92900 1129 aaKnown RBP eCLIP17.8■□□□□ 0.44
PRPF40B-210ENST00000549547 EP400Q96L91 3159 aa17.8■□□□□ 0.44
PRPF40B-210ENST00000549547 SMG6Q86US8 1419 aaKnown RBP17.8■□□□□ 0.44
PRPF40B-210ENST00000549547 HOXC9P31274 260 aa17.79■□□□□ 0.44
PRPF40B-210ENST00000549547 RRS1Q15050 365 aaKnown RBP17.79■□□□□ 0.44
PRPF40B-210ENST00000549547 FLT4P35916 1363 aa17.79■□□□□ 0.44
PRPF40B-210ENST00000549547 LRRC37A3O60309 1634 aa17.77■□□□□ 0.44
PRPF40B-210ENST00000549547 PDE3BQ13370 1112 aa17.77■□□□□ 0.44
PRPF40B-210ENST00000549547 CCDC125Q86Z20 511 aa17.77■□□□□ 0.44
PRPF40B-210ENST00000549547 NLRP2Q9NX02 1062 aa17.77■□□□□ 0.44
PRPF40B-210ENST00000549547 PEAK1Q9H792 1746 aa17.77■□□□□ 0.44
PRPF40B-210ENST00000549547 INSRP06213 1382 aa17.77■□□□□ 0.43
PRPF40B-210ENST00000549547 FBLN1P23142 703 aa17.76■□□□□ 0.43
PRPF40B-210ENST00000549547 DISP2A7MBM2 1401 aa17.74■□□□□ 0.43
PRPF40B-210ENST00000549547 DDB1Q16531 1140 aa17.74■□□□□ 0.43
PRPF40B-210ENST00000549547 MORC1Q86VD1 984 aa17.74■□□□□ 0.43
PRPF40B-210ENST00000549547 LTV1Q96GA3 475 aaPredicted RBP17.74■□□□□ 0.43
PRPF40B-210ENST00000549547 RGPD1P0DJD0 1748 aa17.74■□□□□ 0.43
PRPF40B-210ENST00000549547 AMER1Q5JTC6 1135 aaPredicted RBP17.73■□□□□ 0.43
PRPF40B-210ENST00000549547 EMILIN1Q9Y6C2 1016 aa17.73■□□□□ 0.43
PRPF40B-210ENST00000549547 RGPD2P0DJD1 1756 aa17.73■□□□□ 0.43
PRPF40B-210ENST00000549547 NPC1L1Q9UHC9 1359 aa17.72■□□□□ 0.43
PRPF40B-210ENST00000549547 FAM196AQ6ZSG2 479 aa17.72■□□□□ 0.43
PRPF40B-210ENST00000549547 PPM1GO15355 546 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 PER1O15534 1290 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 IL2RBP14784 551 aa17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 TNNT2P45379 298 aaPredicted RBP17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 SF3B2Q13435 895 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 HSP90AB2PQ58FF8 381 aa17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 POLKQ9UBT6 870 aa17.71■□□□□ 0.43
PRPF40B-210ENST00000549547 EXOC5O00471 708 aa17.7■□□□□ 0.42
PRPF40B-210ENST00000549547 OVOS2A0A0G2JMS6 1433 aa17.7■□□□□ 0.42
PRPF40B-210ENST00000549547 TNS2Q63HR2 1409 aa17.7■□□□□ 0.42
PRPF40B-210ENST00000549547 FAM182BQ5T319 152 aa17.66■□□□□ 0.42
PRPF40B-210ENST00000549547 TNS1Q9HBL0 1735 aaKnown RBP17.66■□□□□ 0.42
PRPF40B-210ENST00000549547 CC2D1BQ5T0F9 858 aaKnown RBP17.65■□□□□ 0.42
PRPF40B-210ENST00000549547 NBPF6Q5VWK0 638 aa17.65■□□□□ 0.42
PRPF40B-210ENST00000549547 NBPF4Q96M43 638 aa17.65■□□□□ 0.42
PRPF40B-210ENST00000549547 SBF2Q86WG5 1849 aa17.65■□□□□ 0.42
PRPF40B-210ENST00000549547 BCL9O00512 1426 aa17.64■□□□□ 0.42
PRPF40B-210ENST00000549547 RAPGEF4Q8WZA2 1011 aa17.64■□□□□ 0.41
PRPF40B-210ENST00000549547 BAG6P46379 1132 aa17.63■□□□□ 0.41
PRPF40B-210ENST00000549547 NCAPD2Q15021 1401 aa17.63■□□□□ 0.41
PRPF40B-210ENST00000549547 MARCH10Q8NA82 808 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-210ENST00000549547 MEGF6O75095 1541 aa17.62■□□□□ 0.41
PRPF40B-210ENST00000549547 TRIM37O94972 964 aa17.61■□□□□ 0.41
PRPF40B-210ENST00000549547 TATP17735 454 aaPredicted RBP17.61■□□□□ 0.41
PRPF40B-210ENST00000549547 USHBP1Q8N6Y0 703 aa17.61■□□□□ 0.41
PRPF40B-210ENST00000549547 EIF4A2Q14240 407 aaKnown RBP17.6■□□□□ 0.41
PRPF40B-210ENST00000549547 SHANK3Q9BYB0 1731 aa17.59■□□□□ 0.41
PRPF40B-210ENST00000549547 PLEKHG2Q9H7P9 1386 aa17.59■□□□□ 0.41
PRPF40B-210ENST00000549547 ZCRB1Q8TBF4 217 aaKnown RBP17.59■□□□□ 0.41
PRPF40B-210ENST00000549547 EYA1Q99502 592 aa17.59■□□□□ 0.41
PRPF40B-210ENST00000549547 PKD1L3Q7Z443 1732 aa17.58■□□□□ 0.41
PRPF40B-210ENST00000549547 NHSQ6T4R5 1651 aa17.58■□□□□ 0.41
PRPF40B-210ENST00000549547 RGPD3A6NKT7 1758 aaPredicted RBP17.58■□□□□ 0.4
PRPF40B-210ENST00000549547 RGPD4Q7Z3J3 1758 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms