RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 EMID1Q96A84 441 aaPredicted RBP7.64□□□□□ -1.19
PTCH1-216ENST00000548379 CARD14Q9BXL6 1004 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 MAGEB6P1A0A0J9YX57 407 aa7.63□□□□□ -1.19
PTCH1-216ENST00000548379 MAP7D1Q3KQU3 841 aa7.63□□□□□ -1.19
PTCH1-216ENST00000548379 SLFNL1Q499Z3 407 aa7.63□□□□□ -1.19
PTCH1-216ENST00000548379 RNF135Q8IUD6 432 aa7.63□□□□□ -1.19
PTCH1-216ENST00000548379 PLPP7Q8NBV4 271 aa7.63□□□□□ -1.19
PTCH1-216ENST00000548379 ZBTB24O43167 697 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-216ENST00000548379 CCDC85AQ96PX6 553 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-216ENST00000548379 VRTNQ9H8Y1 702 aa7.62□□□□□ -1.19
PTCH1-216ENST00000548379 USTQ9Y2C2 406 aa7.62□□□□□ -1.19
PTCH1-216ENST00000548379 GIGYF1O75420 1035 aaPredicted RBP7.61□□□□□ -1.19
PTCH1-216ENST00000548379 VARSP26640 1264 aaKnown RBP7.61□□□□□ -1.19
PTCH1-216ENST00000548379 ELOAQ14241 798 aaKnown RBP7.61□□□□□ -1.19
PTCH1-216ENST00000548379 AGERQ15109 404 aa7.61□□□□□ -1.19
PTCH1-216ENST00000548379 TSGA10IPQ3SY00 556 aa7.61□□□□□ -1.19
PTCH1-216ENST00000548379 SLC10A4Q96EP9 437 aa7.61□□□□□ -1.19
PTCH1-216ENST00000548379 CDV3Q9UKY7 258 aaKnown RBP7.61□□□□□ -1.19
PTCH1-216ENST00000548379 MAP4K5Q9Y4K4 846 aa7.61□□□□□ -1.19
PTCH1-216ENST00000548379 TMEM88BA6NKF7 163 aa7.6□□□□□ -1.19
PTCH1-216ENST00000548379 PDE4CQ08493 712 aa7.6□□□□□ -1.19
PTCH1-216ENST00000548379 NCOA4Q13772 614 aa7.6□□□□□ -1.19
PTCH1-216ENST00000548379 LIAT1Q6ZQX7 453 aa7.6□□□□□ -1.19
PTCH1-216ENST00000548379 CCDC125Q86Z20 511 aa7.6□□□□□ -1.19
PTCH1-216ENST00000548379 FAM196BA6NMK8 535 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 TRIM26Q12899 539 aaPredicted RBP7.59□□□□□ -1.19
PTCH1-216ENST00000548379 NBPF20Q3BBV1 942 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 CDCA8Q53HL2 280 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 SEPT12Q8IYM1 358 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 DEPDC4Q8N2C3 294 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 MPNDQ8N594 471 aa7.59□□□□□ -1.19
PTCH1-216ENST00000548379 MKRN1Q9UHC7 482 aaKnown RBP7.59□□□□□ -1.19
PTCH1-216ENST00000548379 ATP5J2-PTCD1G3V325 749 aa7.58□□□□□ -1.2
PTCH1-216ENST00000548379 RNF20Q5VTR2 975 aa7.58□□□□□ -1.2
PTCH1-216ENST00000548379 CDK15Q96Q40 435 aa7.58□□□□□ -1.2
PTCH1-216ENST00000548379 ZMIZ1Q9ULJ6 1067 aa7.58□□□□□ -1.2
PTCH1-216ENST00000548379 CD2BP2O95400 341 aaKnown RBP7.57□□□□□ -1.2
PTCH1-216ENST00000548379 CSB-PGBD3P0DP91 1061 aa7.57□□□□□ -1.2
PTCH1-216ENST00000548379 PTK7Q13308 1070 aa7.57□□□□□ -1.2
PTCH1-216ENST00000548379 SIAH2O43255 324 aa7.56□□□□□ -1.2
PTCH1-216ENST00000548379 DKK1O94907 266 aa7.56□□□□□ -1.2
PTCH1-216ENST00000548379 EML3Q32P44 896 aa7.56□□□□□ -1.2
PTCH1-216ENST00000548379 CRTC2Q53ET0 693 aaPredicted RBP7.56□□□□□ -1.2
PTCH1-216ENST00000548379 RC3H1Q5TC82 1133 aaKnown RBP7.56□□□□□ -1.2
PTCH1-216ENST00000548379 KCTD17Q8N5Z5 321 aa7.56□□□□□ -1.2
PTCH1-216ENST00000548379 KCTD15Q96SI1 283 aaPredicted RBP7.56□□□□□ -1.2
PTCH1-216ENST00000548379 DOLKQ9UPQ8 538 aa7.56□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L15C9J2P7 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L10C9JJH3 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L13C9JLJ4 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L12C9JPN9 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L11C9JVI0 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L21D6R901 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L18D6R9N7 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L22D6RA61 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L17D6RBQ6 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L19D6RCP7 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L20D6RJB6 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 USP17L24Q0WX57 530 aa7.55□□□□□ -1.2
PTCH1-216ENST00000548379 CDCA7Q9BWT1 371 aaPredicted RBP7.55□□□□□ -1.2
PTCH1-216ENST00000548379 WNT7AO00755 349 aa7.54□□□□□ -1.2
PTCH1-216ENST00000548379 ZBTB7BO15156 539 aaPredicted RBP7.54□□□□□ -1.2
PTCH1-216ENST00000548379 CLDN10P78369 228 aa7.54□□□□□ -1.2
PTCH1-216ENST00000548379 INTS6LQ5JSJ4 861 aaKnown RBP7.54□□□□□ -1.2
PTCH1-216ENST00000548379 EHBP1Q8NDI1 1231 aa7.54□□□□□ -1.2
PTCH1-216ENST00000548379 NOD1Q9Y239 953 aa7.54□□□□□ -1.2
PTCH1-216ENST00000548379 A0A0G2JS52 829 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 CARNS1A5YM72 827 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 RASA1P20936 1047 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 SLC19A1P41440 591 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 GRM5P41594 1212 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 FAM69CQ0P6D2 419 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 TMEM164Q5U3C3 297 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 TRIM50Q86XT4 487 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 OGFOD1Q8N543 542 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 STK32AQ8WU08 396 aa7.53□□□□□ -1.2
PTCH1-216ENST00000548379 NOVA2Q9UNW9 492 aaKnown RBP7.53□□□□□ -1.2
PTCH1-216ENST00000548379 BRD1O95696 1058 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 SPRYD7Q5W111 196 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 LARP1Q6PKG0 1096 aaKnown RBP7.52□□□□□ -1.21
PTCH1-216ENST00000548379 VASH1Q7L8A9 365 aaPredicted RBP7.52□□□□□ -1.21
PTCH1-216ENST00000548379 SIX5Q8N196 739 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 LARGE2Q8N3Y3 721 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 PCDHB11Q9Y5F2 797 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 PCDHGA11Q9Y5H2 935 aa7.52□□□□□ -1.21
PTCH1-216ENST00000548379 ERVH48-1M5A8F1 160 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 ATP1A2P50993 1020 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 USP4Q13107 963 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 OXLD1Q5BKU9 147 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 ANKMY2Q8IV38 441 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 DNAAF2Q9NVR5 837 aaKnown RBP7.51□□□□□ -1.21
PTCH1-216ENST00000548379 KIAA1024Q9UPX6 916 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 TLL2Q9Y6L7 1015 aa7.51□□□□□ -1.21
PTCH1-216ENST00000548379 ERVK-9P63128 1117 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 GTF2IP78347 998 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 SIRT1Q96EB6 747 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 MRGPRX2Q96LB1 330 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 PLA2G2EQ9NZK7 142 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 SLAIN2Q9P270 581 aa7.5□□□□□ -1.21
PTCH1-216ENST00000548379 ZBTB7CA1YPR0 619 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms