RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 LARP1Q6PKG0 1096 aaKnown RBP16.42■□□□□ 0.22
HDAC4-216ENST00000544989 CRB1P82279 1406 aa16.42■□□□□ 0.22
HDAC4-216ENST00000544989 BRWD3Q6RI45 1802 aa16.42■□□□□ 0.22
HDAC4-216ENST00000544989 NFAT5O94916 1531 aa16.41■□□□□ 0.22
HDAC4-216ENST00000544989 SF3B2Q13435 895 aaKnown RBP16.41■□□□□ 0.22
HDAC4-216ENST00000544989 COG3Q96JB2 828 aa16.41■□□□□ 0.22
HDAC4-216ENST00000544989 THSD7AQ9UPZ6 1657 aa16.4■□□□□ 0.22
HDAC4-216ENST00000544989 SOX12O15370 315 aa16.4■□□□□ 0.22
HDAC4-216ENST00000544989 USP35Q9P2H5 1018 aa16.4■□□□□ 0.22
HDAC4-216ENST00000544989 WDR17Q8IZU2 1322 aa16.4■□□□□ 0.22
HDAC4-216ENST00000544989 OVOS2A0A0J9YW53 1432 aa16.39■□□□□ 0.21
HDAC4-216ENST00000544989 OVOS2Q6IE36 1432 aa16.39■□□□□ 0.21
HDAC4-216ENST00000544989 C11orf95C9JLR9 678 aaPredicted RBP16.39■□□□□ 0.21
HDAC4-216ENST00000544989 TOM1L2Q6ZVM7 507 aa16.39■□□□□ 0.21
HDAC4-216ENST00000544989 CDCA7Q9BWT1 371 aaPredicted RBP16.39■□□□□ 0.21
HDAC4-216ENST00000544989 CSB-PGBD3P0DP91 1061 aa16.38■□□□□ 0.21
HDAC4-216ENST00000544989 COL18A1P39060 1754 aa16.38■□□□□ 0.21
HDAC4-216ENST00000544989 HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
HDAC4-216ENST00000544989 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
HDAC4-216ENST00000544989 AXIN2Q9Y2T1 843 aa16.37■□□□□ 0.21
HDAC4-216ENST00000544989 FAM196AQ6ZSG2 479 aa16.36■□□□□ 0.21
HDAC4-216ENST00000544989 CARD10Q9BWT7 1032 aa16.36■□□□□ 0.21
HDAC4-216ENST00000544989 CCDC7Q96M83 1385 aa16.35■□□□□ 0.21
HDAC4-216ENST00000544989 FYB1O15117 783 aa16.33■□□□□ 0.2
HDAC4-216ENST00000544989 IP6K1Q92551 441 aa16.33■□□□□ 0.2
HDAC4-216ENST00000544989 ERBB3P21860 1342 aa16.33■□□□□ 0.2
HDAC4-216ENST00000544989 BAG6P46379 1132 aa16.32■□□□□ 0.2
HDAC4-216ENST00000544989 CGNL1Q0VF96 1302 aa16.32■□□□□ 0.2
HDAC4-216ENST00000544989 DEFB132Q7Z7B7 95 aa16.32■□□□□ 0.2
HDAC4-216ENST00000544989 RTL1A6NKG5 1358 aa16.31■□□□□ 0.2
HDAC4-216ENST00000544989 DDB1Q16531 1140 aa16.31■□□□□ 0.2
HDAC4-216ENST00000544989 LTN1O94822 1766 aa16.31■□□□□ 0.2
HDAC4-216ENST00000544989 PARP4Q9UKK3 1724 aaKnown RBP16.31■□□□□ 0.2
HDAC4-216ENST00000544989 NSD3Q9BZ95 1437 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 AMPHP49418 695 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 ANKRD24Q8TF21 1146 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 POLR3GLQ9BT43 218 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 GGNBP2Q9H3C7 697 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 MYOM1P52179 1685 aa16.3■□□□□ 0.2
HDAC4-216ENST00000544989 KIF24Q5T7B8 1368 aa16.29■□□□□ 0.2
HDAC4-216ENST00000544989 NLRP2Q9NX02 1062 aa16.29■□□□□ 0.2
HDAC4-216ENST00000544989 MAP3K19Q56UN5 1328 aa16.28■□□□□ 0.2
HDAC4-216ENST00000544989 CARD14Q9BXL6 1004 aa16.28■□□□□ 0.2
HDAC4-216ENST00000544989 RGPD5Q99666 1765 aa16.28■□□□□ 0.2
HDAC4-216ENST00000544989 RGPD1P0DJD0 1748 aa16.28■□□□□ 0.2
HDAC4-216ENST00000544989 HOXC9P31274 260 aa16.27■□□□□ 0.2
HDAC4-216ENST00000544989 OVOS2A0A0G2JMS6 1433 aa16.27■□□□□ 0.19
HDAC4-216ENST00000544989 DISP2A7MBM2 1401 aa16.27■□□□□ 0.19
HDAC4-216ENST00000544989 KIF20BQ96Q89 1820 aa16.26■□□□□ 0.19
HDAC4-216ENST00000544989 EXOC5O00471 708 aa16.26■□□□□ 0.19
HDAC4-216ENST00000544989 FAM182BQ5T319 152 aa16.26■□□□□ 0.19
HDAC4-216ENST00000544989 SMG6Q86US8 1419 aaKnown RBP16.26■□□□□ 0.19
HDAC4-216ENST00000544989 FAM208AQ9UK61 1670 aaKnown RBP16.25■□□□□ 0.19
HDAC4-216ENST00000544989 IL2RBP14784 551 aa16.25■□□□□ 0.19
HDAC4-216ENST00000544989 BCL9O00512 1426 aa16.25■□□□□ 0.19
HDAC4-216ENST00000544989 PARD3Q8TEW0 1356 aa16.25■□□□□ 0.19
HDAC4-216ENST00000544989 NSD2O96028 1365 aa16.24■□□□□ 0.19
HDAC4-216ENST00000544989 FLT4P35916 1363 aa16.24■□□□□ 0.19
HDAC4-216ENST00000544989 WNK3Q9BYP7 1800 aa16.24■□□□□ 0.19
HDAC4-216ENST00000544989 LRRC37A3O60309 1634 aa16.23■□□□□ 0.19
HDAC4-216ENST00000544989 TRIM37O94972 964 aa16.23■□□□□ 0.19
HDAC4-216ENST00000544989 RRS1Q15050 365 aaKnown RBP16.23■□□□□ 0.19
HDAC4-216ENST00000544989 PANK3Q9H999 370 aa16.23■□□□□ 0.19
HDAC4-216ENST00000544989 TNS2Q63HR2 1409 aa16.22■□□□□ 0.19
HDAC4-216ENST00000544989 LTV1Q96GA3 475 aaPredicted RBP16.21■□□□□ 0.19
HDAC4-216ENST00000544989 INSRP06213 1382 aa16.21■□□□□ 0.19
HDAC4-216ENST00000544989 APBA3O96018 575 aa16.2■□□□□ 0.18
HDAC4-216ENST00000544989 KNSTRNQ9Y448 316 aa16.2■□□□□ 0.18
HDAC4-216ENST00000544989 FBLN1P23142 703 aa16.19■□□□□ 0.18
HDAC4-216ENST00000544989 EN1Q05925 392 aaPredicted RBP16.19■□□□□ 0.18
HDAC4-216ENST00000544989 MARCH10Q8NA82 808 aaPredicted RBP16.19■□□□□ 0.18
HDAC4-216ENST00000544989 TNS1Q9HBL0 1735 aaKnown RBP16.19■□□□□ 0.18
HDAC4-216ENST00000544989 KIF7Q2M1P5 1343 aa16.19■□□□□ 0.18
HDAC4-216ENST00000544989 BCL11BQ9C0K0 894 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-216ENST00000544989 PEAK1Q9H792 1746 aa16.18■□□□□ 0.18
HDAC4-216ENST00000544989 PSDA5PKW4 1024 aaPredicted RBP16.17■□□□□ 0.18
HDAC4-216ENST00000544989 CAMKK2Q96RR4 588 aa16.17■□□□□ 0.18
HDAC4-216ENST00000544989 HSP90AB2PQ58FF8 381 aa16.16■□□□□ 0.18
HDAC4-216ENST00000544989 UTRNP46939 3433 aa16.16■□□□□ 0.18
HDAC4-216ENST00000544989 WASHC2AQ641Q2 1341 aa16.16■□□□□ 0.18
HDAC4-216ENST00000544989 PLSCR1O15162 318 aa16.15■□□□□ 0.18
HDAC4-216ENST00000544989 RAPGEF4Q8WZA2 1011 aa16.15■□□□□ 0.18
HDAC4-216ENST00000544989 ANKRD26Q9UPS8 1709 aa16.15■□□□□ 0.18
HDAC4-216ENST00000544989 EMILIN1Q9Y6C2 1016 aa16.15■□□□□ 0.18
HDAC4-216ENST00000544989 PPM1GO15355 546 aaPredicted RBP16.14■□□□□ 0.17
HDAC4-216ENST00000544989 EZH2Q15910 746 aaKnown RBP16.14■□□□□ 0.17
HDAC4-216ENST00000544989 NBPF6Q5VWK0 638 aa16.14■□□□□ 0.17
HDAC4-216ENST00000544989 NBPF4Q96M43 638 aa16.14■□□□□ 0.17
HDAC4-216ENST00000544989 MORC1Q86VD1 984 aa16.13■□□□□ 0.17
HDAC4-216ENST00000544989 ZCRB1Q8TBF4 217 aaKnown RBP16.13■□□□□ 0.17
HDAC4-216ENST00000544989 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
HDAC4-216ENST00000544989 TATP17735 454 aaPredicted RBP16.12■□□□□ 0.17
HDAC4-216ENST00000544989 NBPF14Q5TI25 921 aa16.12■□□□□ 0.17
HDAC4-216ENST00000544989 SBF2Q86WG5 1849 aa16.12■□□□□ 0.17
HDAC4-216ENST00000544989 RGPD3A6NKT7 1758 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-216ENST00000544989 RGPD4Q7Z3J3 1758 aa16.11■□□□□ 0.17
HDAC4-216ENST00000544989 MAP2P11137 1827 aaKnown RBP16.1■□□□□ 0.17
HDAC4-216ENST00000544989 TNNT2P45379 298 aaPredicted RBP16.1■□□□□ 0.17
HDAC4-216ENST00000544989 DDX54Q8TDD1 881 aaKnown RBP16.1■□□□□ 0.17
HDAC4-216ENST00000544989 PLEKHG2Q9H7P9 1386 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms