RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 NFAT5O94916 1531 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 ANKRD26Q9UPS8 1709 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 CRYBG1Q9Y4K1 1723 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 FAM83GA6ND36 823 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 PPM1GO15355 546 aaPredicted RBP15.69■□□□□ 0.1
YBX3-213ENST00000542641 AMPHP49418 695 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 CHRNA2Q15822 529 aa15.69■□□□□ 0.1
YBX3-213ENST00000542641 C8orf37Q96NL8 207 aa15.68■□□□□ 0.1
YBX3-213ENST00000542641 POLKQ9UBT6 870 aa15.68■□□□□ 0.1
YBX3-213ENST00000542641 EMILIN1Q9Y6C2 1016 aa15.68■□□□□ 0.1
YBX3-213ENST00000542641 ABCA3Q99758 1704 aa15.68■□□□□ 0.1
YBX3-213ENST00000542641 LRP6O75581 1613 aa15.68■□□□□ 0.1
YBX3-213ENST00000542641 PPP2R1AP30153 589 aa15.67■□□□□ 0.1
YBX3-213ENST00000542641 NGLY1Q96IV0 654 aa15.67■□□□□ 0.1
YBX3-213ENST00000542641 MTHFSP49914 203 aa15.66■□□□□ 0.1
YBX3-213ENST00000542641 IP6K1Q92551 441 aa15.66■□□□□ 0.1
YBX3-213ENST00000542641 CACNB1Q02641 598 aaPredicted RBP15.65■□□□□ 0.1
YBX3-213ENST00000542641 MYBBP1AQ9BQG0 1328 aaKnown RBP15.65■□□□□ 0.1
YBX3-213ENST00000542641 HOXC9P31274 260 aa15.64■□□□□ 0.09
YBX3-213ENST00000542641 BTG4Q9NY30 223 aa15.64■□□□□ 0.09
YBX3-213ENST00000542641 AXIN2Q9Y2T1 843 aa15.64■□□□□ 0.09
YBX3-213ENST00000542641 FLT4P35916 1363 aa15.63■□□□□ 0.09
YBX3-213ENST00000542641 KIF24Q5T7B8 1368 aa15.63■□□□□ 0.09
YBX3-213ENST00000542641 HSP90AB2PQ58FF8 381 aa15.63■□□□□ 0.09
YBX3-213ENST00000542641 RTL1A6NKG5 1358 aa15.62■□□□□ 0.09
YBX3-213ENST00000542641 EVA1CP58658 441 aa15.62■□□□□ 0.09
YBX3-213ENST00000542641 FNBP4Q8N3X1 1017 aaPredicted RBP15.62■□□□□ 0.09
YBX3-213ENST00000542641 SMG6Q86US8 1419 aaKnown RBP15.61■□□□□ 0.09
YBX3-213ENST00000542641 LTV1Q96GA3 475 aaPredicted RBP15.61■□□□□ 0.09
YBX3-213ENST00000542641 CFAP53Q96M91 514 aa15.61■□□□□ 0.09
YBX3-213ENST00000542641 STRN4Q9NRL3 753 aa15.61■□□□□ 0.09
YBX3-213ENST00000542641 LTN1O94822 1766 aa15.6■□□□□ 0.09
YBX3-213ENST00000542641 COL14A1Q05707 1796 aaKnown RBP15.6■□□□□ 0.09
YBX3-213ENST00000542641 MAP2P11137 1827 aaKnown RBP15.6■□□□□ 0.09
YBX3-213ENST00000542641 ANKRD24Q8TF21 1146 aa15.6■□□□□ 0.09
YBX3-213ENST00000542641 USP21Q9UK80 565 aa15.6■□□□□ 0.09
YBX3-213ENST00000542641 AFF2P51816 1311 aa15.6■□□□□ 0.09
YBX3-213ENST00000542641 INSRP06213 1382 aa15.6■□□□□ 0.09
YBX3-213ENST00000542641 BLMP54132 1417 aaPredicted RBP15.6■□□□□ 0.09
YBX3-213ENST00000542641 ATXN8OSP0DMR3 200 aa15.59■□□□□ 0.09
YBX3-213ENST00000542641 CAMTA1Q9Y6Y1 1673 aa15.59■□□□□ 0.09
YBX3-213ENST00000542641 CDK12Q9NYV4 1490 aaPredicted RBP15.59■□□□□ 0.09
YBX3-213ENST00000542641 ABCC6O95255 1503 aa15.58■□□□□ 0.09
YBX3-213ENST00000542641 PEAK1Q9H792 1746 aa15.58■□□□□ 0.08
YBX3-213ENST00000542641 CSB-PGBD3P0DP91 1061 aa15.58■□□□□ 0.08
YBX3-213ENST00000542641 UNC5CLQ8IV45 518 aa15.58■□□□□ 0.08
YBX3-213ENST00000542641 SLIT2O94813 1529 aa15.58■□□□□ 0.08
YBX3-213ENST00000542641 COL18A1P39060 1754 aa15.57■□□□□ 0.08
YBX3-213ENST00000542641 EIF4A2Q14240 407 aaKnown RBP15.57■□□□□ 0.08
YBX3-213ENST00000542641 ERBB3P21860 1342 aa15.57■□□□□ 0.08
YBX3-213ENST00000542641 LMO7Q8WWI1 1683 aa15.57■□□□□ 0.08
YBX3-213ENST00000542641 DIAPH1O60610 1272 aaKnown RBP15.56■□□□□ 0.08
YBX3-213ENST00000542641 LARP1Q6PKG0 1096 aaKnown RBP15.56■□□□□ 0.08
YBX3-213ENST00000542641 MIER1Q8N108 512 aa15.56■□□□□ 0.08
YBX3-213ENST00000542641 COL5A2P05997 1499 aaPredicted RBP15.56■□□□□ 0.08
YBX3-213ENST00000542641 BCL9LQ86UU0 1499 aa15.56■□□□□ 0.08
YBX3-213ENST00000542641 WDR17Q8IZU2 1322 aa15.55■□□□□ 0.08
YBX3-213ENST00000542641 ZNF772Q68DY9 489 aaPredicted RBP15.55■□□□□ 0.08
YBX3-213ENST00000542641 TOM1L2Q6ZVM7 507 aa15.55■□□□□ 0.08
YBX3-213ENST00000542641 SPINK5Q9NQ38 1064 aaPredicted RBP15.55■□□□□ 0.08
YBX3-213ENST00000542641 NLRP2Q9NX02 1062 aa15.55■□□□□ 0.08
YBX3-213ENST00000542641 PLCH1Q4KWH8 1693 aa15.54■□□□□ 0.08
YBX3-213ENST00000542641 IL13P35225 146 aa15.54■□□□□ 0.08
YBX3-213ENST00000542641 CCDC9Q9Y3X0 531 aaKnown RBP15.54■□□□□ 0.08
YBX3-213ENST00000542641 VPS72Q15906 364 aa15.53■□□□□ 0.08
YBX3-213ENST00000542641 QTRT2Q9H974 415 aaKnown RBP15.53■□□□□ 0.08
YBX3-213ENST00000542641 TRPC5Q9UL62 973 aaPredicted RBP15.53■□□□□ 0.08
YBX3-213ENST00000542641 NUDCQ9Y266 331 aa15.53■□□□□ 0.08
YBX3-213ENST00000542641 NWD2Q9ULI1 1742 aa15.53■□□□□ 0.08
YBX3-213ENST00000542641 RGPD5Q99666 1765 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 U2SURPO15042 1029 aaKnown RBP15.52■□□□□ 0.08
YBX3-213ENST00000542641 CCDC184Q52MB2 194 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 NBPF6Q5VWK0 638 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 NBPF4Q96M43 638 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 MRS2Q9HD23 443 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 USP35Q9P2H5 1018 aa15.52■□□□□ 0.08
YBX3-213ENST00000542641 COL3A1P02461 1466 aaPredicted RBP15.52■□□□□ 0.07
YBX3-213ENST00000542641 CRB1P82279 1406 aa15.51■□□□□ 0.07
YBX3-213ENST00000542641 CAPN15O75808 1086 aa15.51■□□□□ 0.07
YBX3-213ENST00000542641 EYA1Q99502 592 aa15.51■□□□□ 0.07
YBX3-213ENST00000542641 CARD10Q9BWT7 1032 aa15.51■□□□□ 0.07
YBX3-213ENST00000542641 CCER2I3L3R5 266 aa15.5■□□□□ 0.07
YBX3-213ENST00000542641 USHBP1Q8N6Y0 703 aa15.5■□□□□ 0.07
YBX3-213ENST00000542641 RGS17Q9UGC6 210 aaPredicted RBP15.5■□□□□ 0.07
YBX3-213ENST00000542641 SPATA31A1Q5TZJ5 1347 aa15.49■□□□□ 0.07
YBX3-213ENST00000542641 SPATA31A5Q5VU36 1347 aa15.49■□□□□ 0.07
YBX3-213ENST00000542641 SPATA31A7Q8IWB4 1347 aa15.49■□□□□ 0.07
YBX3-213ENST00000542641 NRAPQ86VF7 1730 aa15.49■□□□□ 0.07
YBX3-213ENST00000542641 GJD4Q96KN9 370 aaPredicted RBP15.49■□□□□ 0.07
YBX3-213ENST00000542641 IGSF1Q8N6C5 1336 aa15.48■□□□□ 0.07
YBX3-213ENST00000542641 U2AF1L5P0DN76 240 aaPredicted RBP15.48■□□□□ 0.07
YBX3-213ENST00000542641 U2AF1Q01081 240 aaKnown RBP eCLIP15.48■□□□□ 0.073e-16■■□□□ 13.9
YBX3-213ENST00000542641 WDR43Q15061 677 aaKnown RBP eCLIP15.48■□□□□ 0.07
YBX3-213ENST00000542641 SULT6B1Q6IMI4 303 aa15.48■□□□□ 0.07
YBX3-213ENST00000542641 TCP11L2Q8N4U5 519 aa15.48■□□□□ 0.07
YBX3-213ENST00000542641 ATRNO75882 1429 aa15.48■□□□□ 0.07
YBX3-213ENST00000542641 HMOX1P09601 288 aa15.47■□□□□ 0.07
YBX3-213ENST00000542641 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.47■□□□□ 0.07
YBX3-213ENST00000542641 THRAP3Q9Y2W1 955 aaKnown RBP15.47■□□□□ 0.07
YBX3-213ENST00000542641 ZNF219Q9P2Y4 722 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms