RNA–Protein interactions for RNA: ENST00000542133.5

NPIPB4-215, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 910 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-215	ENST00000542133	SPDYE2B	A6NHP3	402 aa		11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	GIGYF1	O75420	1035 aa	Predicted RBP	11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	SPDYE6	P0CI01	402 aa		11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	SPDYE2	Q495Y8	402 aa		11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	SYT17	Q9BSW7	474 aa		11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	EIF3A	Q14152	1382 aa	Known RBP	11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	DHX57	Q6P158	1386 aa	Known RBP	11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	ATP7B	P35670	1465 aa		11.51	□□□□□ -0.57
NPIPB4-215	ENST00000542133	SHANK3	Q9BYB0	1731 aa		11.5	□□□□□ -0.57
NPIPB4-215	ENST00000542133	RGL3	Q3MIN7	710 aa		11.5	□□□□□ -0.57
NPIPB4-215	ENST00000542133	ITSN1	Q15811	1721 aa		11.49	□□□□□ -0.57
NPIPB4-215	ENST00000542133	PLSCR1	O15162	318 aa		11.49	□□□□□ -0.57
NPIPB4-215	ENST00000542133	KLHL34	Q8N239	644 aa		11.49	□□□□□ -0.57
NPIPB4-215	ENST00000542133	TCP11L2	Q8N4U5	519 aa		11.49	□□□□□ -0.57
NPIPB4-215	ENST00000542133	C14orf93	Q9H972	538 aa	Known RBP	11.49	□□□□□ -0.57
NPIPB4-215	ENST00000542133	C11orf95	C9JLR9	678 aa	Predicted RBP	11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	PITPNM1	O00562	1244 aa		11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	PAK3	O75914	559 aa	Predicted RBP	11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	MKRN4P	Q13434	485 aa	Predicted RBP	11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	LARP1	Q6PKG0	1096 aa	Known RBP	11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	PODXL2	Q9NZ53	605 aa		11.48	□□□□□ -0.57
NPIPB4-215	ENST00000542133	ADGRB1	O14514	1584 aa		11.47	□□□□□ -0.57
NPIPB4-215	ENST00000542133	MAP3K5	Q99683	1374 aa		11.47	□□□□□ -0.57
NPIPB4-215	ENST00000542133	ZC3H6	P61129	1189 aa	Known RBP	11.47	□□□□□ -0.57
NPIPB4-215	ENST00000542133	SGIP1	Q9BQI5	828 aa		11.47	□□□□□ -0.57
NPIPB4-215	ENST00000542133	WNK3	Q9BYP7	1800 aa		11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	COL5A2	P05997	1499 aa	Predicted RBP	11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	EVA1C	P58658	441 aa		11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	CFAP70	Q5T0N1	1121 aa		11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	NGDN	Q8NEJ9	315 aa	Known RBP	11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	POGK	Q9P215	609 aa		11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	THRAP3	Q9Y2W1	955 aa	Known RBP	11.46	□□□□□ -0.57
NPIPB4-215	ENST00000542133	CPD	O75976	1380 aa		11.45	□□□□□ -0.58
NPIPB4-215	ENST00000542133	PTF1A	Q7RTS3	328 aa		11.45	□□□□□ -0.58
NPIPB4-215	ENST00000542133	PROM2	Q8N271	834 aa		11.45	□□□□□ -0.58
NPIPB4-215	ENST00000542133	MTFR1L	Q9H019	292 aa		11.45	□□□□□ -0.58
NPIPB4-215	ENST00000542133	TOPAZ1	Q8N9V7	1692 aa		11.44	□□□□□ -0.58
NPIPB4-215	ENST00000542133	TPRN	Q4KMQ1	711 aa		11.44	□□□□□ -0.58
NPIPB4-215	ENST00000542133	GOLGB1	Q14789	3259 aa	Known RBP	11.44	□□□□□ -0.58
NPIPB4-215	ENST00000542133	AKAP12	Q02952	1782 aa		11.44	□□□□□ -0.58
NPIPB4-215	ENST00000542133	CRB1	P82279	1406 aa		11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	PAPPA	Q13219	1627 aa		11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	ZNF692	Q9BU19	519 aa	Predicted RBP	11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	STK32B	Q9NY57	414 aa		11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	BCL9	O00512	1426 aa		11.43	□□□□□ -0.58
NPIPB4-215	ENST00000542133	WASL	O00401	505 aa	Predicted RBP	11.42	□□□□□ -0.58
NPIPB4-215	ENST00000542133	SLC15A2	Q16348	729 aa		11.42	□□□□□ -0.58
NPIPB4-215	ENST00000542133	NUTM2G	Q5VZR2	741 aa		11.42	□□□□□ -0.58
NPIPB4-215	ENST00000542133	PIP4P2	Q8N4L2	257 aa		11.42	□□□□□ -0.58
NPIPB4-215	ENST00000542133	AATK	Q6ZMQ8	1374 aa		11.41	□□□□□ -0.58
NPIPB4-215	ENST00000542133	USP19	O94966	1318 aa		11.41	□□□□□ -0.58
NPIPB4-215	ENST00000542133	TXNRD1	Q16881	649 aa		11.4	□□□□□ -0.58
NPIPB4-215	ENST00000542133	GTF3C3	Q9Y5Q9	886 aa		11.4	□□□□□ -0.58
NPIPB4-215	ENST00000542133	POLR3A	O14802	1390 aa	Predicted RBP	11.4	□□□□□ -0.59
NPIPB4-215	ENST00000542133	DDB1	Q16531	1140 aa		11.39	□□□□□ -0.59
NPIPB4-215	ENST00000542133	GPR162	Q16538	588 aa		11.39	□□□□□ -0.59
NPIPB4-215	ENST00000542133	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.39	□□□□□ -0.59
NPIPB4-215	ENST00000542133	COL24A1	Q17RW2	1714 aa		11.38	□□□□□ -0.59
NPIPB4-215	ENST00000542133	TRAK1	Q9UPV9	953 aa		11.38	□□□□□ -0.59
NPIPB4-215	ENST00000542133	CLEC11A	Q9Y240	323 aa		11.38	□□□□□ -0.59
NPIPB4-215	ENST00000542133	NHS	Q6T4R5	1651 aa		11.38	□□□□□ -0.59
NPIPB4-215	ENST00000542133	MARCH10	Q8NA82	808 aa	Predicted RBP	11.37	□□□□□ -0.59
NPIPB4-215	ENST00000542133	ATP10D	Q9P241	1426 aa		11.36	□□□□□ -0.59
NPIPB4-215	ENST00000542133	NUDT16	Q96DE0	195 aa	Known RBP	11.36	□□□□□ -0.59
NPIPB4-215	ENST00000542133	SLIT3	O75094	1523 aa		11.35	□□□□□ -0.59
NPIPB4-215	ENST00000542133	QSER1	Q2KHR3	1735 aa		11.35	□□□□□ -0.59
NPIPB4-215	ENST00000542133	COL18A1	P39060	1754 aa		11.35	□□□□□ -0.59
NPIPB4-215	ENST00000542133	ACE	P12821	1306 aa		11.35	□□□□□ -0.59
NPIPB4-215	ENST00000542133	GC	P02774	474 aa		11.34	□□□□□ -0.59
NPIPB4-215	ENST00000542133	HSPA6	P17066	643 aa		11.34	□□□□□ -0.59
NPIPB4-215	ENST00000542133	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.34	□□□□□ -0.59
NPIPB4-215	ENST00000542133	ABTB2	Q8N961	1025 aa		11.34	□□□□□ -0.59
NPIPB4-215	ENST00000542133	FXR2	P51116	673 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
NPIPB4-215	ENST00000542133	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.33	□□□□□ -0.6
NPIPB4-215	ENST00000542133	MPHOSPH9	Q99550	1183 aa		11.33	□□□□□ -0.6
NPIPB4-215	ENST00000542133	FBXO3	Q9UK99	471 aa		11.33	□□□□□ -0.6
NPIPB4-215	ENST00000542133	TNS2	Q63HR2	1409 aa		11.33	□□□□□ -0.6
NPIPB4-215	ENST00000542133	ZNF827	Q17R98	1081 aa		11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	TOM1L2	Q6ZVM7	507 aa		11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	SSUH2	Q9Y2M2	353 aa		11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	BTAF1	O14981	1849 aa		11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	WDR17	Q8IZU2	1322 aa		11.32	□□□□□ -0.6
NPIPB4-215	ENST00000542133	ADCY9	O60503	1353 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	ABCC6	O95255	1503 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	TUBGCP6	Q96RT7	1819 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	NPM2	Q86SE8	214 aa	Known RBP	11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	NLRP13	Q86W25	1043 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	NLGN2	Q8NFZ4	835 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	TRPM1	Q7Z4N2	1603 aa		11.31	□□□□□ -0.6
NPIPB4-215	ENST00000542133	PLEKHG3	A1L390	1219 aa		11.3	□□□□□ -0.6
NPIPB4-215	ENST00000542133	ZBTB7C	A1YPR0	619 aa		11.3	□□□□□ -0.6
NPIPB4-215	ENST00000542133	YBX3	P16989	372 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
NPIPB4-215	ENST00000542133	PLCB2	Q00722	1185 aa		11.3	□□□□□ -0.6
NPIPB4-215	ENST00000542133	CPSF1	Q10570	1443 aa	Known RBP	11.29	□□□□□ -0.6
NPIPB4-215	ENST00000542133	POLD1	P28340	1107 aa		11.29	□□□□□ -0.6
NPIPB4-215	ENST00000542133	CDK19	Q9BWU1	502 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms