RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LRRC59Q96AG4 307 aaKnown RBP12.67□□□□□ -0.38
DDX55-208ENST00000541259 SLIT3O75094 1523 aa12.66□□□□□ -0.38
DDX55-208ENST00000541259 ARHGEF10O15013 1369 aa12.66□□□□□ -0.38
DDX55-208ENST00000541259 USP19O94966 1318 aa12.65□□□□□ -0.38
DDX55-208ENST00000541259 MYBBP1AQ9BQG0 1328 aaKnown RBP12.65□□□□□ -0.38
DDX55-208ENST00000541259 HSPA1LP34931 641 aa12.65□□□□□ -0.38
DDX55-208ENST00000541259 CCDC184Q52MB2 194 aa12.65□□□□□ -0.38
DDX55-208ENST00000541259 COL22A1Q8NFW1 1626 aaPredicted RBP12.65□□□□□ -0.38
DDX55-208ENST00000541259 RGPD5Q99666 1765 aa12.64□□□□□ -0.39
DDX55-208ENST00000541259 NFAT5O94916 1531 aa12.64□□□□□ -0.39
DDX55-208ENST00000541259 RRS1Q15050 365 aaKnown RBP12.64□□□□□ -0.39
DDX55-208ENST00000541259 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
DDX55-208ENST00000541259 PEAK1Q9H792 1746 aa12.64□□□□□ -0.39
DDX55-208ENST00000541259 PNPLA6Q8IY17 1366 aa12.64□□□□□ -0.39
DDX55-208ENST00000541259 GCP02774 474 aa12.63□□□□□ -0.39
DDX55-208ENST00000541259 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
DDX55-208ENST00000541259 EMILIN1Q9Y6C2 1016 aa12.63□□□□□ -0.39
DDX55-208ENST00000541259 SHPRHQ149N8 1683 aa12.63□□□□□ -0.39
DDX55-208ENST00000541259 AATKQ6ZMQ8 1374 aa12.62□□□□□ -0.39
DDX55-208ENST00000541259 MTHFSP49914 203 aa12.62□□□□□ -0.39
DDX55-208ENST00000541259 ZC3H6P61129 1189 aaKnown RBP12.61□□□□□ -0.39
DDX55-208ENST00000541259 REM2Q8IYK8 340 aaPredicted RBP12.61□□□□□ -0.39
DDX55-208ENST00000541259 KCNH5Q8NCM2 988 aa12.61□□□□□ -0.39
DDX55-208ENST00000541259 COL18A1P39060 1754 aa12.61□□□□□ -0.39
DDX55-208ENST00000541259 MAP3K19Q56UN5 1328 aa12.61□□□□□ -0.39
DDX55-208ENST00000541259 ZBTB7CA1YPR0 619 aa12.6□□□□□ -0.39
DDX55-208ENST00000541259 PPM1GO15355 546 aaPredicted RBP12.6□□□□□ -0.39
DDX55-208ENST00000541259 CCER2I3L3R5 266 aa12.59□□□□□ -0.39
DDX55-208ENST00000541259 ARHGEF25Q86VW2 580 aa12.59□□□□□ -0.39
DDX55-208ENST00000541259 PLCD3Q8N3E9 789 aa12.59□□□□□ -0.39
DDX55-208ENST00000541259 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
DDX55-208ENST00000541259 JCADQ9P266 1359 aa12.58□□□□□ -0.4
DDX55-208ENST00000541259 HAP1P54257 671 aaPredicted RBP12.58□□□□□ -0.4
DDX55-208ENST00000541259 SMG6Q86US8 1419 aaKnown RBP12.58□□□□□ -0.4
DDX55-208ENST00000541259 FBXO41Q8TF61 875 aa12.58□□□□□ -0.4
DDX55-208ENST00000541259 RGPD2P0DJD1 1756 aa12.58□□□□□ -0.4
DDX55-208ENST00000541259 NUTM2BA6NNL0 878 aaPredicted RBP12.57□□□□□ -0.4
DDX55-208ENST00000541259 NUTM2EB1AL46 878 aaPredicted RBP12.57□□□□□ -0.4
DDX55-208ENST00000541259 AMPHP49418 695 aa12.57□□□□□ -0.4
DDX55-208ENST00000541259 CHRNA2Q15822 529 aa12.57□□□□□ -0.4
DDX55-208ENST00000541259 NUTM2AQ8IVF1 878 aaPredicted RBP12.57□□□□□ -0.4
DDX55-208ENST00000541259 MRS2Q9HD23 443 aa12.57□□□□□ -0.4
DDX55-208ENST00000541259 KIAA0232Q92628 1395 aa12.56□□□□□ -0.4
DDX55-208ENST00000541259 HOXC9P31274 260 aa12.56□□□□□ -0.4
DDX55-208ENST00000541259 HSP90AB2PQ58FF8 381 aa12.56□□□□□ -0.4
DDX55-208ENST00000541259 AXIN2Q9Y2T1 843 aa12.56□□□□□ -0.4
DDX55-208ENST00000541259 COL3A1P02461 1466 aaPredicted RBP12.56□□□□□ -0.4
DDX55-208ENST00000541259 CDK12Q9NYV4 1490 aaPredicted RBP12.55□□□□□ -0.4
DDX55-208ENST00000541259 FAM83GA6ND36 823 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 ADAMTS2O95450 1211 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 IP6K1Q92551 441 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 CPDO75976 1380 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 INSRP06213 1382 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 FLT4P35916 1363 aa12.55□□□□□ -0.4
DDX55-208ENST00000541259 LMO7Q8WWI1 1683 aa12.54□□□□□ -0.4
DDX55-208ENST00000541259 KLHL34Q8N239 644 aa12.54□□□□□ -0.4
DDX55-208ENST00000541259 PRDM11Q9NQV5 511 aa12.54□□□□□ -0.4
DDX55-208ENST00000541259 COL14A1Q05707 1796 aaKnown RBP12.53□□□□□ -0.4
DDX55-208ENST00000541259 LRP6O75581 1613 aa12.53□□□□□ -0.4
DDX55-208ENST00000541259 EIF4A2Q14240 407 aaKnown RBP12.53□□□□□ -0.4
DDX55-208ENST00000541259 LTV1Q96GA3 475 aaPredicted RBP12.53□□□□□ -0.4
DDX55-208ENST00000541259 CFAP53Q96M91 514 aa12.53□□□□□ -0.4
DDX55-208ENST00000541259 PLCH1Q4KWH8 1693 aa12.53□□□□□ -0.4
DDX55-208ENST00000541259 RTL1A6NKG5 1358 aa12.53□□□□□ -0.4
DDX55-208ENST00000541259 KIF24Q5T7B8 1368 aa12.53□□□□□ -0.4
DDX55-208ENST00000541259 CAMTA1Q9Y6Y1 1673 aa12.52□□□□□ -0.4
DDX55-208ENST00000541259 DIAPH1O60610 1272 aaKnown RBP12.52□□□□□ -0.41
DDX55-208ENST00000541259 IL13P35225 146 aa12.52□□□□□ -0.41
DDX55-208ENST00000541259 PNISRQ8TF01 805 aaKnown RBP12.52□□□□□ -0.41
DDX55-208ENST00000541259 SPATA31A6Q5VVP1 1343 aa12.52□□□□□ -0.41
DDX55-208ENST00000541259 RGPD1P0DJD0 1748 aa12.51□□□□□ -0.41
DDX55-208ENST00000541259 FAM9BQ8IZU0 186 aa12.51□□□□□ -0.41
DDX55-208ENST00000541259 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
DDX55-208ENST00000541259 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
DDX55-208ENST00000541259 IFNLR1Q8IU57 520 aaPredicted RBP12.5□□□□□ -0.41
DDX55-208ENST00000541259 ANKRD24Q8TF21 1146 aa12.5□□□□□ -0.41
DDX55-208ENST00000541259 ABCC6O95255 1503 aa12.5□□□□□ -0.41
DDX55-208ENST00000541259 BLMP54132 1417 aaPredicted RBP12.49□□□□□ -0.41
DDX55-208ENST00000541259 U2SURPO15042 1029 aaKnown RBP12.49□□□□□ -0.41
DDX55-208ENST00000541259 BTG4Q9NY30 223 aa12.49□□□□□ -0.41
DDX55-208ENST00000541259 ADAMTS8Q9UP79 889 aa12.49□□□□□ -0.41
DDX55-208ENST00000541259 NRAPQ86VF7 1730 aa12.48□□□□□ -0.41
DDX55-208ENST00000541259 EYA1Q99502 592 aa12.48□□□□□ -0.41
DDX55-208ENST00000541259 NWD2Q9ULI1 1742 aa12.48□□□□□ -0.41
DDX55-208ENST00000541259 COL5A2P05997 1499 aaPredicted RBP12.47□□□□□ -0.41
DDX55-208ENST00000541259 U2AF1L5P0DN76 240 aaPredicted RBP12.47□□□□□ -0.41
DDX55-208ENST00000541259 U2AF1Q01081 240 aaKnown RBP eCLIP12.47□□□□□ -0.41
DDX55-208ENST00000541259 WDR43Q15061 677 aaKnown RBP eCLIP12.47□□□□□ -0.41
DDX55-208ENST00000541259 NBPF6Q5VWK0 638 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 USHBP1Q8N6Y0 703 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 NBPF4Q96M43 638 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 C8orf37Q96NL8 207 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 STRN4Q9NRL3 753 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 NUDCQ9Y266 331 aa12.47□□□□□ -0.41
DDX55-208ENST00000541259 FAM208AQ9UK61 1670 aaKnown RBP12.47□□□□□ -0.41
DDX55-208ENST00000541259 ERBB3P21860 1342 aa12.46□□□□□ -0.41
DDX55-208ENST00000541259 HMOX1P09601 288 aa12.46□□□□□ -0.41
DDX55-208ENST00000541259 AEBP1Q8IUX7 1158 aa12.46□□□□□ -0.41
DDX55-208ENST00000541259 NGLY1Q96IV0 654 aa12.46□□□□□ -0.41
DDX55-208ENST00000541259 SLIT2O94813 1529 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms