RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 USP31Q70CQ4 1352 aa14.53□□□□□ -0.08
CDCA3-208ENST00000540683 ST20-MTHFSA0A0A6YYL1 179 aa14.53□□□□□ -0.08
CDCA3-208ENST00000540683 LARP1Q6PKG0 1096 aaKnown RBP14.52□□□□□ -0.09
CDCA3-208ENST00000540683 TOM1L2Q6ZVM7 507 aa14.52□□□□□ -0.09
CDCA3-208ENST00000540683 ARHGEF25Q86VW2 580 aa14.52□□□□□ -0.09
CDCA3-208ENST00000540683 PARD3Q8TEW0 1356 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 USP47Q96K76 1375 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 WDR17Q8IZU2 1322 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 ZBTB22O15209 634 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 CSB-PGBD3P0DP91 1061 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 CNKSR2Q8WXI2 1034 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 PCGF6Q9BYE7 350 aa14.51□□□□□ -0.09
CDCA3-208ENST00000540683 USP54Q70EL1 1684 aa14.5□□□□□ -0.09
CDCA3-208ENST00000540683 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.5□□□□□ -0.09
CDCA3-208ENST00000540683 DISP2A7MBM2 1401 aa14.49□□□□□ -0.09
CDCA3-208ENST00000540683 CCDC7Q96M83 1385 aa14.49□□□□□ -0.09
CDCA3-208ENST00000540683 TESK2Q96S53 571 aa14.49□□□□□ -0.09
CDCA3-208ENST00000540683 SLC12A5Q9H2X9 1139 aa14.49□□□□□ -0.09
CDCA3-208ENST00000540683 PARP4Q9UKK3 1724 aaKnown RBP14.49□□□□□ -0.09
CDCA3-208ENST00000540683 DDB1Q16531 1140 aa14.48□□□□□ -0.09
CDCA3-208ENST00000540683 COG3Q96JB2 828 aa14.48□□□□□ -0.09
CDCA3-208ENST00000540683 CARD10Q9BWT7 1032 aa14.48□□□□□ -0.09
CDCA3-208ENST00000540683 A0A1W2PP64 1363 aa14.47□□□□□ -0.09
CDCA3-208ENST00000540683 ANKRD36BQ8N2N9 1353 aa14.47□□□□□ -0.09
CDCA3-208ENST00000540683 NFAT5O94916 1531 aa14.46□□□□□ -0.09
CDCA3-208ENST00000540683 CCER1Q8TC90 406 aaPredicted RBP14.46□□□□□ -0.09
CDCA3-208ENST00000540683 OVOS2A0A0G2JMS6 1433 aa14.46□□□□□ -0.09
CDCA3-208ENST00000540683 OVOS2A0A0J9YW53 1432 aa14.46□□□□□ -0.09
CDCA3-208ENST00000540683 OVOS2Q6IE36 1432 aa14.46□□□□□ -0.09
CDCA3-208ENST00000540683 CD163L1Q9NR16 1453 aa14.45□□□□□ -0.1
CDCA3-208ENST00000540683 COL18A1P39060 1754 aa14.45□□□□□ -0.1
CDCA3-208ENST00000540683 SOX12O15370 315 aa14.45□□□□□ -0.1
CDCA3-208ENST00000540683 DEFB132Q7Z7B7 95 aa14.45□□□□□ -0.1
CDCA3-208ENST00000540683 EXOC5O00471 708 aa14.44□□□□□ -0.1
CDCA3-208ENST00000540683 NME9Q86XW9 330 aa14.44□□□□□ -0.1
CDCA3-208ENST00000540683 TRIM37O94972 964 aa14.43□□□□□ -0.1
CDCA3-208ENST00000540683 APBA3O96018 575 aa14.43□□□□□ -0.1
CDCA3-208ENST00000540683 NBPF14Q5TI25 921 aa14.43□□□□□ -0.1
CDCA3-208ENST00000540683 AXIN2Q9Y2T1 843 aa14.42□□□□□ -0.1
CDCA3-208ENST00000540683 FAM208AQ9UK61 1670 aaKnown RBP14.42□□□□□ -0.1
CDCA3-208ENST00000540683 LTN1O94822 1766 aa14.42□□□□□ -0.1
CDCA3-208ENST00000540683 ERBB3P21860 1342 aa14.41□□□□□ -0.1
CDCA3-208ENST00000540683 BCL9O00512 1426 aa14.41□□□□□ -0.1
CDCA3-208ENST00000540683 NLRP2Q9NX02 1062 aa14.41□□□□□ -0.1
CDCA3-208ENST00000540683 WNK3Q9BYP7 1800 aa14.41□□□□□ -0.1
CDCA3-208ENST00000540683 TNS1Q9HBL0 1735 aaKnown RBP14.41□□□□□ -0.1
CDCA3-208ENST00000540683 RTL1A6NKG5 1358 aa14.4□□□□□ -0.1
CDCA3-208ENST00000540683 EN1Q05925 392 aaPredicted RBP14.4□□□□□ -0.1
CDCA3-208ENST00000540683 FAM182BQ5T319 152 aa14.4□□□□□ -0.1
CDCA3-208ENST00000540683 IP6K1Q92551 441 aa14.4□□□□□ -0.1
CDCA3-208ENST00000540683 KIF24Q5T7B8 1368 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 IL2RBP14784 551 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 AMPHP49418 695 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 EIF4G2P78344 907 aaKnown RBP eCLIP14.39□□□□□ -0.11
CDCA3-208ENST00000540683 ANKRD24Q8TF21 1146 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 LRRC37A3O60309 1634 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 RGPD5Q99666 1765 aa14.39□□□□□ -0.11
CDCA3-208ENST00000540683 SMG6Q86US8 1419 aaKnown RBP14.39□□□□□ -0.11
CDCA3-208ENST00000540683 HMGB2P26583 209 aaKnown RBP14.38□□□□□ -0.11
CDCA3-208ENST00000540683 BCL11BQ9C0K0 894 aaPredicted RBP14.38□□□□□ -0.11
CDCA3-208ENST00000540683 RGPD3A6NKT7 1758 aaPredicted RBP14.37□□□□□ -0.11
CDCA3-208ENST00000540683 RGPD4Q7Z3J3 1758 aa14.37□□□□□ -0.11
CDCA3-208ENST00000540683 PLSCR1O15162 318 aa14.37□□□□□ -0.11
CDCA3-208ENST00000540683 CAMKK2Q96RR4 588 aa14.37□□□□□ -0.11
CDCA3-208ENST00000540683 TNS2Q63HR2 1409 aa14.37□□□□□ -0.11
CDCA3-208ENST00000540683 EZH2Q15910 746 aaKnown RBP14.35□□□□□ -0.11
CDCA3-208ENST00000540683 CGNL1Q0VF96 1302 aa14.35□□□□□ -0.11
CDCA3-208ENST00000540683 FYB1O15117 783 aa14.34□□□□□ -0.11
CDCA3-208ENST00000540683 PEAK1Q9H792 1746 aa14.34□□□□□ -0.11
CDCA3-208ENST00000540683 KIF20BQ96Q89 1820 aa14.34□□□□□ -0.11
CDCA3-208ENST00000540683 LRP5O75197 1615 aa14.33□□□□□ -0.11
CDCA3-208ENST00000540683 HOXC9P31274 260 aa14.33□□□□□ -0.12
CDCA3-208ENST00000540683 SRCAPQ6ZRS2 3230 aa14.32□□□□□ -0.12
CDCA3-208ENST00000540683 SBF2Q86WG5 1849 aa14.32□□□□□ -0.12
CDCA3-208ENST00000540683 MARCH10Q8NA82 808 aaPredicted RBP14.32□□□□□ -0.12
CDCA3-208ENST00000540683 MAP3K19Q56UN5 1328 aa14.32□□□□□ -0.12
CDCA3-208ENST00000540683 RREB1Q92766 1687 aa14.32□□□□□ -0.12
CDCA3-208ENST00000540683 FLT4P35916 1363 aa14.31□□□□□ -0.12
CDCA3-208ENST00000540683 R3HDM1Q15032 1099 aaKnown RBP14.3□□□□□ -0.12
CDCA3-208ENST00000540683 GGNBP2Q9H3C7 697 aa14.3□□□□□ -0.12
CDCA3-208ENST00000540683 PSDA5PKW4 1024 aaPredicted RBP14.29□□□□□ -0.12
CDCA3-208ENST00000540683 RAPGEF4Q8WZA2 1011 aa14.29□□□□□ -0.12
CDCA3-208ENST00000540683 LTV1Q96GA3 475 aaPredicted RBP14.29□□□□□ -0.12
CDCA3-208ENST00000540683 INSRP06213 1382 aa14.29□□□□□ -0.12
CDCA3-208ENST00000540683 NSD3Q9BZ95 1437 aa14.29□□□□□ -0.12
CDCA3-208ENST00000540683 POLR3GLQ9BT43 218 aa14.28□□□□□ -0.12
CDCA3-208ENST00000540683 NUP188Q5SRE5 1749 aa14.27□□□□□ -0.12
CDCA3-208ENST00000540683 MYOM1P52179 1685 aa14.27□□□□□ -0.12
CDCA3-208ENST00000540683 NSD2O96028 1365 aa14.27□□□□□ -0.12
CDCA3-208ENST00000540683 NHSQ6T4R5 1651 aa14.26□□□□□ -0.13
CDCA3-208ENST00000540683 HSPA5P11021 654 aaKnown RBP14.26□□□□□ -0.13
CDCA3-208ENST00000540683 RRS1Q15050 365 aaKnown RBP14.26□□□□□ -0.13
CDCA3-208ENST00000540683 ZCRB1Q8TBF4 217 aaKnown RBP14.26□□□□□ -0.13
CDCA3-208ENST00000540683 TATP17735 454 aaPredicted RBP14.25□□□□□ -0.13
CDCA3-208ENST00000540683 STK32BQ9NY57 414 aa14.25□□□□□ -0.13
CDCA3-208ENST00000540683 KAT6BQ8WYB5 2073 aa14.24□□□□□ -0.13
CDCA3-208ENST00000540683 PLEKHG2Q9H7P9 1386 aa14.24□□□□□ -0.13
CDCA3-208ENST00000540683 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
CDCA3-208ENST00000540683 DDX54Q8TDD1 881 aaKnown RBP14.24□□□□□ -0.13
CDCA3-208ENST00000540683 CARD14Q9BXL6 1004 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms