RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 COL5A2P05997 1499 aaPredicted RBP21.74■■□□□ 1.07
RPAIN-206ENST00000539417 LARP1Q6PKG0 1096 aaKnown RBP21.73■■□□□ 1.07
RPAIN-206ENST00000539417 SPATA31A5Q5VU36 1347 aa21.71■■□□□ 1.07
RPAIN-206ENST00000539417 SPATA31A7Q8IWB4 1347 aa21.71■■□□□ 1.07
RPAIN-206ENST00000539417 ZEB1P37275 1124 aaPredicted RBP21.71■■□□□ 1.07
RPAIN-206ENST00000539417 CGNL1Q0VF96 1302 aa21.7■■□□□ 1.06
RPAIN-206ENST00000539417 MAP3K19Q56UN5 1328 aa21.7■■□□□ 1.06
RPAIN-206ENST00000539417 CDK12Q9NYV4 1490 aaPredicted RBP21.7■■□□□ 1.06
RPAIN-206ENST00000539417 EVA1CP58658 441 aa21.7■■□□□ 1.06
RPAIN-206ENST00000539417 RRS1Q15050 365 aaKnown RBP21.7■■□□□ 1.06
RPAIN-206ENST00000539417 PER1O15534 1290 aaPredicted RBP21.69■■□□□ 1.06
RPAIN-206ENST00000539417 ANKRD26Q9UPS8 1709 aa21.68■■□□□ 1.06
RPAIN-206ENST00000539417 SPATA31A1Q5TZJ5 1347 aa21.68■■□□□ 1.06
RPAIN-206ENST00000539417 USP35Q9P2H5 1018 aa21.67■■□□□ 1.06
RPAIN-206ENST00000539417 PEAK1Q9H792 1746 aa21.67■■□□□ 1.06
RPAIN-206ENST00000539417 FAM98CQ17RN3 349 aaKnown RBP21.66■■□□□ 1.06
RPAIN-206ENST00000539417 AMER1Q5JTC6 1135 aaPredicted RBP21.66■■□□□ 1.06
RPAIN-206ENST00000539417 ABCC6O95255 1503 aa21.64■■□□□ 1.06
RPAIN-206ENST00000539417 BRWD3Q6RI45 1802 aa21.64■■□□□ 1.05
RPAIN-206ENST00000539417 ONECUT3O60422 494 aaPredicted RBP21.64■■□□□ 1.05
RPAIN-206ENST00000539417 HOXC9P31274 260 aa21.64■■□□□ 1.05
RPAIN-206ENST00000539417 TNNT2P45379 298 aaPredicted RBP21.64■■□□□ 1.05
RPAIN-206ENST00000539417 IP6K1Q92551 441 aa21.64■■□□□ 1.05
RPAIN-206ENST00000539417 KNSTRNQ9Y448 316 aa21.64■■□□□ 1.05
RPAIN-206ENST00000539417 WDR17Q8IZU2 1322 aa21.63■■□□□ 1.05
RPAIN-206ENST00000539417 SEPT12Q8IYM1 358 aa21.63■■□□□ 1.05
RPAIN-206ENST00000539417 EMILIN1Q9Y6C2 1016 aa21.63■■□□□ 1.05
RPAIN-206ENST00000539417 CRB1P82279 1406 aa21.62■■□□□ 1.05
RPAIN-206ENST00000539417 SOCS7O14512 581 aa21.61■■□□□ 1.05
RPAIN-206ENST00000539417 TOM1L2Q6ZVM7 507 aa21.61■■□□□ 1.05
RPAIN-206ENST00000539417 ANKRD24Q8TF21 1146 aa21.61■■□□□ 1.05
RPAIN-206ENST00000539417 LTV1Q96GA3 475 aaPredicted RBP21.61■■□□□ 1.05
RPAIN-206ENST00000539417 THSD7AQ9UPZ6 1657 aa21.61■■□□□ 1.05
RPAIN-206ENST00000539417 ERBB3P21860 1342 aa21.6■■□□□ 1.05
RPAIN-206ENST00000539417 AMPHP49418 695 aa21.6■■□□□ 1.05
RPAIN-206ENST00000539417 MAP2P11137 1827 aaKnown RBP21.6■■□□□ 1.05
RPAIN-206ENST00000539417 CSB-PGBD3P0DP91 1061 aa21.59■■□□□ 1.05
RPAIN-206ENST00000539417 CNGB1Q14028 1251 aaPredicted RBP21.59■■□□□ 1.05
RPAIN-206ENST00000539417 EP400Q96L91 3159 aa21.59■■□□□ 1.05
RPAIN-206ENST00000539417 BLMP54132 1417 aaPredicted RBP21.59■■□□□ 1.05
RPAIN-206ENST00000539417 NSD2O96028 1365 aa21.59■■□□□ 1.05
RPAIN-206ENST00000539417 HSP90AB2PQ58FF8 381 aa21.58■■□□□ 1.05
RPAIN-206ENST00000539417 CC2D1BQ5T0F9 858 aaKnown RBP21.58■■□□□ 1.05
RPAIN-206ENST00000539417 TCP11L2Q8N4U5 519 aa21.58■■□□□ 1.05
RPAIN-206ENST00000539417 POLKQ9UBT6 870 aa21.58■■□□□ 1.05
RPAIN-206ENST00000539417 RGPD2P0DJD1 1756 aa21.57■■□□□ 1.04
RPAIN-206ENST00000539417 A0A0G2JS52 829 aa21.57■■□□□ 1.04
RPAIN-206ENST00000539417 MYT1Q01538 1121 aa21.57■■□□□ 1.04
RPAIN-206ENST00000539417 MORC1Q86VD1 984 aa21.57■■□□□ 1.04
RPAIN-206ENST00000539417 RTL1A6NKG5 1358 aa21.56■■□□□ 1.04
RPAIN-206ENST00000539417 PPM1GO15355 546 aaPredicted RBP21.56■■□□□ 1.04
RPAIN-206ENST00000539417 BARGINQ6ZT62 677 aa21.56■■□□□ 1.04
RPAIN-206ENST00000539417 CARD10Q9BWT7 1032 aa21.56■■□□□ 1.04
RPAIN-206ENST00000539417 WNK3Q9BYP7 1800 aa21.55■■□□□ 1.04
RPAIN-206ENST00000539417 FAM182BQ5T319 152 aa21.54■■□□□ 1.04
RPAIN-206ENST00000539417 NLRP2Q9NX02 1062 aa21.54■■□□□ 1.04
RPAIN-206ENST00000539417 FLT4P35916 1363 aa21.54■■□□□ 1.04
RPAIN-206ENST00000539417 INSRP06213 1382 aa21.53■■□□□ 1.04
RPAIN-206ENST00000539417 THRAP3Q9Y2W1 955 aaKnown RBP21.52■■□□□ 1.04
RPAIN-206ENST00000539417 DISP2A7MBM2 1401 aa21.52■■□□□ 1.03
RPAIN-206ENST00000539417 KRT27Q7Z3Y8 459 aa21.51■■□□□ 1.03
RPAIN-206ENST00000539417 FAM208AQ9UK61 1670 aaKnown RBP21.5■■□□□ 1.03
RPAIN-206ENST00000539417 PARP4Q9UKK3 1724 aaKnown RBP21.5■■□□□ 1.03
RPAIN-206ENST00000539417 DDX10Q13206 875 aaKnown RBP21.5■■□□□ 1.03
RPAIN-206ENST00000539417 NBPF6Q5VWK0 638 aa21.5■■□□□ 1.03
RPAIN-206ENST00000539417 USHBP1Q8N6Y0 703 aa21.5■■□□□ 1.03
RPAIN-206ENST00000539417 NBPF4Q96M43 638 aa21.5■■□□□ 1.03
RPAIN-206ENST00000539417 KIF24Q5T7B8 1368 aa21.5■■□□□ 1.03
RPAIN-206ENST00000539417 NPC1L1Q9UHC9 1359 aa21.5■■□□□ 1.03
RPAIN-206ENST00000539417 SMG6Q86US8 1419 aaKnown RBP21.49■■□□□ 1.03
RPAIN-206ENST00000539417 LRRC37A3O60309 1634 aa21.49■■□□□ 1.03
RPAIN-206ENST00000539417 UPF1Q92900 1129 aaKnown RBP eCLIP21.49■■□□□ 1.03
RPAIN-206ENST00000539417 EIF4A2Q14240 407 aaKnown RBP21.45■■□□□ 1.02
RPAIN-206ENST00000539417 MTHFSP49914 203 aa21.43■■□□□ 1.02
RPAIN-206ENST00000539417 MEGF6O75095 1541 aa21.43■■□□□ 1.02
RPAIN-206ENST00000539417 IL2RBP14784 551 aa21.42■■□□□ 1.02
RPAIN-206ENST00000539417 DDB1Q16531 1140 aa21.42■■□□□ 1.02
RPAIN-206ENST00000539417 EYA1Q99502 592 aa21.42■■□□□ 1.02
RPAIN-206ENST00000539417 PDE3BQ13370 1112 aa21.41■■□□□ 1.02
RPAIN-206ENST00000539417 MARCH10Q8NA82 808 aaPredicted RBP21.41■■□□□ 1.02
RPAIN-206ENST00000539417 CDCA7Q9BWT1 371 aaPredicted RBP21.39■■□□□ 1.02
RPAIN-206ENST00000539417 NCAPD2Q15021 1401 aa21.39■■□□□ 1.02
RPAIN-206ENST00000539417 ZNF316A6NFI3 1004 aaPredicted RBP21.39■■□□□ 1.01
RPAIN-206ENST00000539417 TNS2Q63HR2 1409 aa21.39■■□□□ 1.01
RPAIN-206ENST00000539417 EXOC5O00471 708 aa21.38■■□□□ 1.01
RPAIN-206ENST00000539417 SHANK3Q9BYB0 1731 aa21.37■■□□□ 1.01
RPAIN-206ENST00000539417 PPP2R1AP30153 589 aa21.36■■□□□ 1.01
RPAIN-206ENST00000539417 IL13P35225 146 aa21.36■■□□□ 1.01
RPAIN-206ENST00000539417 COL3A1P02461 1466 aaPredicted RBP21.35■■□□□ 1.01
RPAIN-206ENST00000539417 OVOS2A0A0G2JMS6 1433 aa21.35■■□□□ 1.01
RPAIN-206ENST00000539417 RGPD1P0DJD0 1748 aa21.35■■□□□ 1.01
RPAIN-206ENST00000539417 IGSF1Q8N6C5 1336 aa21.34■■□□□ 1.01
RPAIN-206ENST00000539417 PARD3Q8TEW0 1356 aa21.34■■□□□ 1.01
RPAIN-206ENST00000539417 FAM196AQ6ZSG2 479 aa21.33■■□□□ 1.01
RPAIN-206ENST00000539417 PTF1AQ7RTS3 328 aa21.33■■□□□ 1.01
RPAIN-206ENST00000539417 AEBP1Q8IUX7 1158 aa21.33■■□□□ 1.01
RPAIN-206ENST00000539417 TRIM37O94972 964 aa21.32■■□□□ 1
RPAIN-206ENST00000539417 RAPGEF4Q8WZA2 1011 aa21.32■■□□□ 1
RPAIN-206ENST00000539417 TNS1Q9HBL0 1735 aaKnown RBP21.31■■□□□ 1
RPAIN-206ENST00000539417 SBF2Q86WG5 1849 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms