RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TTC21BQ7Z4L5 1316 aa19.5■□□□□ 0.71
SS18-204ENST00000539244 TTC21AQ8NDW8 1320 aa19.5■□□□□ 0.71
SS18-204ENST00000539244 ROCK2O75116 1388 aaKnown RBP19.49■□□□□ 0.71
SS18-204ENST00000539244 PLSCR1O15162 318 aa19.49■□□□□ 0.71
SS18-204ENST00000539244 DDB1Q16531 1140 aa19.49■□□□□ 0.71
SS18-204ENST00000539244 TOM1L2Q6ZVM7 507 aa19.49■□□□□ 0.71
SS18-204ENST00000539244 KCNH5Q8NCM2 988 aa19.49■□□□□ 0.71
SS18-204ENST00000539244 AXIN2Q9Y2T1 843 aa19.49■□□□□ 0.71
SS18-204ENST00000539244 ZBTB7CA1YPR0 619 aa19.48■□□□□ 0.71
SS18-204ENST00000539244 CDCA7Q9BWT1 371 aaPredicted RBP19.48■□□□□ 0.71
SS18-204ENST00000539244 SIN3AQ96ST3 1273 aa19.47■□□□□ 0.71
SS18-204ENST00000539244 NFAT5O94916 1531 aa19.46■□□□□ 0.71
SS18-204ENST00000539244 ABCC6O95255 1503 aa19.46■□□□□ 0.71
SS18-204ENST00000539244 RGPD5Q99666 1765 aa19.46■□□□□ 0.71
SS18-204ENST00000539244 SBNO2Q9Y2G9 1366 aa19.45■□□□□ 0.7
SS18-204ENST00000539244 BCL11BQ9C0K0 894 aaPredicted RBP19.45■□□□□ 0.7
SS18-204ENST00000539244 MON2Q7Z3U7 1717 aa19.45■□□□□ 0.7
SS18-204ENST00000539244 CARD10Q9BWT7 1032 aa19.44■□□□□ 0.7
SS18-204ENST00000539244 USP54Q70EL1 1684 aa19.43■□□□□ 0.7
SS18-204ENST00000539244 MARCH10Q8NA82 808 aaPredicted RBP19.43■□□□□ 0.7
SS18-204ENST00000539244 SPON1Q9HCB6 807 aa19.42■□□□□ 0.7
SS18-204ENST00000539244 KTN1Q86UP2 1357 aaKnown RBP19.42■□□□□ 0.7
SS18-204ENST00000539244 KCNQ2O43526 872 aa19.41■□□□□ 0.7
SS18-204ENST00000539244 USP31Q70CQ4 1352 aa19.41■□□□□ 0.7
SS18-204ENST00000539244 CCDC7Q96M83 1385 aa19.41■□□□□ 0.7
SS18-204ENST00000539244 CASZ1Q86V15 1759 aa19.4■□□□□ 0.7
SS18-204ENST00000539244 NEUROD1Q13562 356 aa19.4■□□□□ 0.7
SS18-204ENST00000539244 PTF1AQ7RTS3 328 aa19.4■□□□□ 0.7
SS18-204ENST00000539244 ANO8Q9HCE9 1232 aaPredicted RBP19.39■□□□□ 0.69
SS18-204ENST00000539244 NINLQ9Y2I6 1382 aa19.39■□□□□ 0.69
SS18-204ENST00000539244 CD163L1Q9NR16 1453 aa19.39■□□□□ 0.69
SS18-204ENST00000539244 SOX12O15370 315 aa19.38■□□□□ 0.69
SS18-204ENST00000539244 CSB-PGBD3P0DP91 1061 aa19.38■□□□□ 0.69
SS18-204ENST00000539244 PROM2Q8N271 834 aa19.38■□□□□ 0.69
SS18-204ENST00000539244 TNS2Q63HR2 1409 aa19.37■□□□□ 0.69
SS18-204ENST00000539244 EXOC5O00471 708 aa19.36■□□□□ 0.69
SS18-204ENST00000539244 PPP1R1BQ9UD71 204 aaPredicted RBP19.35■□□□□ 0.69
SS18-204ENST00000539244 ERBB3P21860 1342 aa19.34■□□□□ 0.69
SS18-204ENST00000539244 LTN1O94822 1766 aa19.33■□□□□ 0.68
SS18-204ENST00000539244 NHSQ6T4R5 1651 aa19.33■□□□□ 0.68
SS18-204ENST00000539244 TXNRD1Q16881 649 aa19.32■□□□□ 0.68
SS18-204ENST00000539244 NME9Q86XW9 330 aa19.32■□□□□ 0.68
SS18-204ENST00000539244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.32■□□□□ 0.68
SS18-204ENST00000539244 CARD11Q9BXL7 1154 aa19.32■□□□□ 0.68
SS18-204ENST00000539244 EDC4Q6P2E9 1401 aaKnown RBP19.32■□□□□ 0.68
SS18-204ENST00000539244 PUS7Q96PZ0 661 aaKnown RBP19.31■□□□□ 0.68
SS18-204ENST00000539244 PDGFDQ9GZP0 370 aaPredicted RBP19.3■□□□□ 0.68
SS18-204ENST00000539244 HDGFL2Q7Z4V5 671 aaPredicted RBP19.29■□□□□ 0.68
SS18-204ENST00000539244 IL2RBP14784 551 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 YY1P25490 414 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 SLC15A2Q16348 729 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 SLC12A5Q9H2X9 1139 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 STK32BQ9NY57 414 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 A0A1W2PP64 1363 aa19.28■□□□□ 0.68
SS18-204ENST00000539244 PTGER2P43116 358 aa19.27■□□□□ 0.68
SS18-204ENST00000539244 TMC1Q8TDI8 760 aa19.27■□□□□ 0.68
SS18-204ENST00000539244 NLRP2Q9NX02 1062 aa19.27■□□□□ 0.68
SS18-204ENST00000539244 PAPPAQ13219 1627 aa19.26■□□□□ 0.67
SS18-204ENST00000539244 DCAF8L1A6NGE4 600 aa19.26■□□□□ 0.67
SS18-204ENST00000539244 TERF2IPQ9NYB0 399 aa19.26■□□□□ 0.67
SS18-204ENST00000539244 MYOM1P52179 1685 aa19.26■□□□□ 0.67
SS18-204ENST00000539244 ZBTB7AO95365 584 aa19.25■□□□□ 0.67
SS18-204ENST00000539244 ANKRD24Q8TF21 1146 aa19.25■□□□□ 0.67
SS18-204ENST00000539244 BTAF1O14981 1849 aa19.24■□□□□ 0.67
SS18-204ENST00000539244 FAM208AQ9UK61 1670 aaKnown RBP19.24■□□□□ 0.67
SS18-204ENST00000539244 TONSLQ96HA7 1378 aa19.23■□□□□ 0.67
SS18-204ENST00000539244 ACSBG1Q96GR2 724 aa19.23■□□□□ 0.67
SS18-204ENST00000539244 IP6K1Q92551 441 aa19.22■□□□□ 0.67
SS18-204ENST00000539244 SGIP1Q9BQI5 828 aa19.22■□□□□ 0.67
SS18-204ENST00000539244 MTFR1LQ9H019 292 aa19.22■□□□□ 0.67
SS18-204ENST00000539244 TESK2Q96S53 571 aa19.21■□□□□ 0.67
SS18-204ENST00000539244 ATF5Q9Y2D1 282 aaPredicted RBP19.21■□□□□ 0.67
SS18-204ENST00000539244 KAT6BQ8WYB5 2073 aa19.2■□□□□ 0.66
SS18-204ENST00000539244 UTRNP46939 3433 aa19.19■□□□□ 0.66
SS18-204ENST00000539244 SLC24A1O60721 1099 aa19.18■□□□□ 0.66
SS18-204ENST00000539244 SYT17Q9BSW7 474 aa19.17■□□□□ 0.66
SS18-204ENST00000539244 FHDC1Q9C0D6 1143 aaPredicted RBP19.17■□□□□ 0.66
SS18-204ENST00000539244 LRRC4BQ9NT99 713 aa19.16■□□□□ 0.66
SS18-204ENST00000539244 QSER1Q2KHR3 1735 aa19.16■□□□□ 0.66
SS18-204ENST00000539244 ST20-MTHFSA0A0A6YYL1 179 aa19.15■□□□□ 0.66
SS18-204ENST00000539244 ZNF827Q17R98 1081 aa19.15■□□□□ 0.66
SS18-204ENST00000539244 COG3Q96JB2 828 aa19.15■□□□□ 0.66
SS18-204ENST00000539244 MAP3K19Q56UN5 1328 aa19.15■□□□□ 0.66
SS18-204ENST00000539244 MAP3K5Q99683 1374 aa19.15■□□□□ 0.66
SS18-204ENST00000539244 HOXC9P31274 260 aa19.14■□□□□ 0.65
SS18-204ENST00000539244 SLC27A3Q5K4L6 730 aa19.14■□□□□ 0.65
SS18-204ENST00000539244 AKT1S1Q96B36 256 aa19.13■□□□□ 0.65
SS18-204ENST00000539244 ANKRD36BQ8N2N9 1353 aa19.13■□□□□ 0.65
SS18-204ENST00000539244 SHANK3Q9BYB0 1731 aa19.13■□□□□ 0.65
SS18-204ENST00000539244 COL24A1Q17RW2 1714 aa19.12■□□□□ 0.65
SS18-204ENST00000539244 RTL1A6NKG5 1358 aa19.12■□□□□ 0.65
SS18-204ENST00000539244 DDX54Q8TDD1 881 aaKnown RBP19.12■□□□□ 0.65
SS18-204ENST00000539244 LTV1Q96GA3 475 aaPredicted RBP19.12■□□□□ 0.65
SS18-204ENST00000539244 RGPD2P0DJD1 1756 aa19.11■□□□□ 0.65
SS18-204ENST00000539244 SLC16A10Q8TF71 515 aa19.11■□□□□ 0.65
SS18-204ENST00000539244 ARXQ96QS3 562 aa19.11■□□□□ 0.65
SS18-204ENST00000539244 LY75O60449 1722 aa19.11■□□□□ 0.65
SS18-204ENST00000539244 DOT1LQ8TEK3 1739 aa19.11■□□□□ 0.65
SS18-204ENST00000539244 CHD4Q14839 1912 aa19.1■□□□□ 0.65
SS18-204ENST00000539244 AMPHP49418 695 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms