RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 PLEKHH2Q8IVE3 1493 aa7.68□□□□□ -1.18
VPS33A-203ENST00000536212 ZMYM4Q5VZL5 1548 aa7.68□□□□□ -1.18
VPS33A-203ENST00000536212 IRF6O14896 467 aa7.68□□□□□ -1.18
VPS33A-203ENST00000536212 ZNF326Q5BKZ1 582 aaKnown RBP7.68□□□□□ -1.18
VPS33A-203ENST00000536212 NPM2Q86SE8 214 aaKnown RBP7.68□□□□□ -1.18
VPS33A-203ENST00000536212 TMC1Q8TDI8 760 aa7.68□□□□□ -1.18
VPS33A-203ENST00000536212 WASHC2CQ9Y4E1 1318 aa7.68□□□□□ -1.18
VPS33A-203ENST00000536212 TRPM1Q7Z4N2 1603 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 CDC42BPBQ9Y5S2 1711 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 PER1O15534 1290 aaPredicted RBP7.67□□□□□ -1.18
VPS33A-203ENST00000536212 GGCXP38435 758 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 EN1Q05925 392 aaPredicted RBP7.67□□□□□ -1.18
VPS33A-203ENST00000536212 PTGDRQ13258 359 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 PDE3BQ13370 1112 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 DCAF11Q8TEB1 546 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 TMUB1Q9BVT8 246 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 A2MP01023 1474 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 MAGI2Q86UL8 1455 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 PLXNC1O60486 1568 aa7.67□□□□□ -1.18
VPS33A-203ENST00000536212 EIF5BO60841 1220 aaKnown RBP7.66□□□□□ -1.18
VPS33A-203ENST00000536212 TRIM67Q6ZTA4 783 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 NLRP13Q86W25 1043 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 NKX2-3Q8TAU0 364 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 CCDC144AA2RUR9 1427 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 COL17A1Q9UMD9 1497 aaPredicted RBP7.66□□□□□ -1.18
VPS33A-203ENST00000536212 PRDM15P57071 1507 aaPredicted RBP7.66□□□□□ -1.18
VPS33A-203ENST00000536212 SHROOM2Q13796 1616 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 IQGAP3Q86VI3 1631 aa7.66□□□□□ -1.18
VPS33A-203ENST00000536212 SMAPO00193 183 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 FECHP22830 423 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 TSR1Q2NL82 804 aaKnown RBP7.65□□□□□ -1.18
VPS33A-203ENST00000536212 IL27Q8NEV9 243 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS33A-203ENST00000536212 CDCA7LQ96GN5 454 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 TESK2Q96S53 571 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 POLR3GLQ9BT43 218 aa7.65□□□□□ -1.18
VPS33A-203ENST00000536212 EIF2AK4Q9P2K8 1649 aaKnown RBP7.64□□□□□ -1.19
VPS33A-203ENST00000536212 SYCP2Q9BX26 1530 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 DUOX2Q9NRD8 1548 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 ERBINQ96RT1 1412 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 MAP3K7O43318 606 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 APLP1P51693 650 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 PRSS12P56730 875 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 AMHR2Q16671 573 aa7.64□□□□□ -1.19
VPS33A-203ENST00000536212 ABCC2Q92887 1545 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 BLMP54132 1417 aaPredicted RBP7.63□□□□□ -1.19
VPS33A-203ENST00000536212 DGAT1O75907 488 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 RRP1P56182 461 aaKnown RBP7.63□□□□□ -1.19
VPS33A-203ENST00000536212 TATDN2Q93075 761 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 CCDC136Q96JN2 1154 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 FAM198AQ9UFP1 575 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 TTC37Q6PGP7 1564 aa7.63□□□□□ -1.19
VPS33A-203ENST00000536212 ARHGAP5Q13017 1502 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 PLCH2O75038 1416 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 NBPF1Q3BBV0 1214 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 PKDCCQ504Y2 493 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 LCE2AQ5TA79 106 aaPredicted RBP7.62□□□□□ -1.19
VPS33A-203ENST00000536212 CERKQ8TCT0 537 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 CDHR5Q9HBB8 845 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 UHRF1BP1LA0JNW5 1464 aa7.62□□□□□ -1.19
VPS33A-203ENST00000536212 POTECB2RU33 542 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 NBPF26B4DH59 902 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 C3orf80F5H4A9 247 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 PARP9Q8IXQ6 854 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 NECTIN2Q92692 538 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 RCAN3Q9UKA8 241 aa7.61□□□□□ -1.19
VPS33A-203ENST00000536212 DISP3Q9P2K9 1392 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 RNF17Q9BXT8 1623 aaKnown RBP7.6□□□□□ -1.19
VPS33A-203ENST00000536212 PRR20EP86478 221 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 PRR20CP86479 221 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 PRR20DP86480 221 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 PRR20BP86481 221 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 PRR20AP86496 221 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 TTLL12Q14166 644 aaPredicted RBP7.6□□□□□ -1.19
VPS33A-203ENST00000536212 TREML4Q6UXN2 200 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 ZMYND15Q9H091 742 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 NPDC1Q9NQX5 325 aaPredicted RBP7.6□□□□□ -1.19
VPS33A-203ENST00000536212 NOP58Q9Y2X3 529 aaKnown RBP7.6□□□□□ -1.19
VPS33A-203ENST00000536212 RTEL1-TNFRSF6BF6WH68 1400 aa7.6□□□□□ -1.19
VPS33A-203ENST00000536212 ARAP3Q8WWN8 1544 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 TCERG1O14776 1098 aaKnown RBP7.59□□□□□ -1.19
VPS33A-203ENST00000536212 HDGFP51858 240 aaKnown RBP7.59□□□□□ -1.19
VPS33A-203ENST00000536212 TMF1P82094 1093 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 FAM117AQ9C073 453 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 PNMA3Q9UL41 463 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 PTPRTO14522 1441 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 SCAPERQ9BY12 1400 aa7.59□□□□□ -1.19
VPS33A-203ENST00000536212 MYO5CQ9NQX4 1742 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 ABCC1P33527 1531 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 MS4A1P11836 297 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 SLC19A1P41440 591 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 CNGB1Q14028 1251 aaPredicted RBP7.58□□□□□ -1.2
VPS33A-203ENST00000536212 RGL3Q3MIN7 710 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 EFCAB2Q5VUJ9 269 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 EMID1Q96A84 441 aaPredicted RBP7.58□□□□□ -1.2
VPS33A-203ENST00000536212 PANK3Q9H999 370 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 NEURL4Q96JN8 1562 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 NPC1L1Q9UHC9 1359 aa7.58□□□□□ -1.2
VPS33A-203ENST00000536212 WDR7Q9Y4E6 1490 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms