RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 PARP4Q9UKK3 1724 aaKnown RBP12.4□□□□□ -0.42
CLIP1-206ENST00000535290 CRB1P82279 1406 aa12.4□□□□□ -0.42
CLIP1-206ENST00000535290 ABTB2Q8N961 1025 aa12.4□□□□□ -0.42
CLIP1-206ENST00000535290 USP19O94966 1318 aa12.39□□□□□ -0.43
CLIP1-206ENST00000535290 LMO7Q8WWI1 1683 aa12.39□□□□□ -0.43
CLIP1-206ENST00000535290 GCP02774 474 aa12.39□□□□□ -0.43
CLIP1-206ENST00000535290 KLHL34Q8N239 644 aa12.39□□□□□ -0.43
CLIP1-206ENST00000535290 SHANK3Q9BYB0 1731 aa12.38□□□□□ -0.43
CLIP1-206ENST00000535290 MPHOSPH9Q99550 1183 aa12.38□□□□□ -0.43
CLIP1-206ENST00000535290 ACEP12821 1306 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 BCL9O00512 1426 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 ZBTB7CA1YPR0 619 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 HSPA6P17066 643 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 TOM1L2Q6ZVM7 507 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 ADGRB1O14514 1584 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 SBF2Q86WG5 1849 aa12.37□□□□□ -0.43
CLIP1-206ENST00000535290 POLR3AO14802 1390 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-206ENST00000535290 NLGN2Q8NFZ4 835 aa12.36□□□□□ -0.43
CLIP1-206ENST00000535290 LRRC37A3O60309 1634 aa12.36□□□□□ -0.43
CLIP1-206ENST00000535290 AATKQ6ZMQ8 1374 aa12.35□□□□□ -0.43
CLIP1-206ENST00000535290 NPM3O75607 178 aaKnown RBP12.35□□□□□ -0.43
CLIP1-206ENST00000535290 YBX3P16989 372 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP1-206ENST00000535290 ZNF827Q17R98 1081 aa12.35□□□□□ -0.43
CLIP1-206ENST00000535290 NLRP13Q86W25 1043 aa12.35□□□□□ -0.43
CLIP1-206ENST00000535290 CDK19Q9BWU1 502 aa12.34□□□□□ -0.43
CLIP1-206ENST00000535290 ATP10DQ9P241 1426 aa12.34□□□□□ -0.43
CLIP1-206ENST00000535290 PLEKHG3A1L390 1219 aa12.33□□□□□ -0.44
CLIP1-206ENST00000535290 AXIN2Q9Y2T1 843 aa12.33□□□□□ -0.44
CLIP1-206ENST00000535290 CCDC61Q9Y6R9 512 aa12.33□□□□□ -0.44
CLIP1-206ENST00000535290 GRIN3BO60391 1043 aa12.32□□□□□ -0.44
CLIP1-206ENST00000535290 CDCA7Q9BWT1 371 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-206ENST00000535290 GPBP1L1Q9HC44 474 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-206ENST00000535290 GOLGB1Q14789 3259 aaKnown RBP12.32□□□□□ -0.44
CLIP1-206ENST00000535290 POLD1P28340 1107 aa12.31□□□□□ -0.44
CLIP1-206ENST00000535290 ACSBG1Q96GR2 724 aa12.31□□□□□ -0.44
CLIP1-206ENST00000535290 LRRC4BQ9NT99 713 aa12.31□□□□□ -0.44
CLIP1-206ENST00000535290 WDR17Q8IZU2 1322 aa12.31□□□□□ -0.44
CLIP1-206ENST00000535290 EXOC5O00471 708 aa12.3□□□□□ -0.44
CLIP1-206ENST00000535290 ZNF526Q8TF50 670 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-206ENST00000535290 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
CLIP1-206ENST00000535290 AKT1S1Q96B36 256 aa12.29□□□□□ -0.44
CLIP1-206ENST00000535290 KDM2AQ9Y2K7 1162 aa12.29□□□□□ -0.44
CLIP1-206ENST00000535290 HOXD11P31277 338 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-206ENST00000535290 NLRP6P59044 892 aa12.28□□□□□ -0.44
CLIP1-206ENST00000535290 CARD10Q9BWT7 1032 aa12.28□□□□□ -0.44
CLIP1-206ENST00000535290 PAPPAQ13219 1627 aa12.28□□□□□ -0.44
CLIP1-206ENST00000535290 PNPLA7Q6ZV29 1317 aa12.27□□□□□ -0.45
CLIP1-206ENST00000535290 ITSN1Q15811 1721 aa12.26□□□□□ -0.45
CLIP1-206ENST00000535290 CSB-PGBD3P0DP91 1061 aa12.26□□□□□ -0.45
CLIP1-206ENST00000535290 CAPN15O75808 1086 aa12.25□□□□□ -0.45
CLIP1-206ENST00000535290 DNAJC5GQ8N7S2 189 aa12.25□□□□□ -0.45
CLIP1-206ENST00000535290 ADCY9O60503 1353 aa12.25□□□□□ -0.45
CLIP1-206ENST00000535290 USP6P35125 1406 aa12.25□□□□□ -0.45
CLIP1-206ENST00000535290 BRD4O60885 1362 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-206ENST00000535290 KCNQ4P56696 695 aa12.24□□□□□ -0.45
CLIP1-206ENST00000535290 COL13A1Q5TAT6 717 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-206ENST00000535290 ARHGEF25Q86VW2 580 aa12.24□□□□□ -0.45
CLIP1-206ENST00000535290 DCAF11Q8TEB1 546 aa12.24□□□□□ -0.45
CLIP1-206ENST00000535290 RNF216Q9NWF9 866 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-206ENST00000535290 KIF3CO14782 793 aa12.23□□□□□ -0.45
CLIP1-206ENST00000535290 TFCP2L1Q9NZI6 479 aa12.23□□□□□ -0.45
CLIP1-206ENST00000535290 COL18A1P39060 1754 aa12.23□□□□□ -0.45
CLIP1-206ENST00000535290 TOPAZ1Q8N9V7 1692 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 SLIT3O75094 1523 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 TNS2Q63HR2 1409 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 APLP1P51693 650 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 AKAP12Q02952 1782 aa12.22□□□□□ -0.45
CLIP1-206ENST00000535290 CPSF1Q10570 1443 aaKnown RBP12.21□□□□□ -0.45
CLIP1-206ENST00000535290 SOX12O15370 315 aa12.21□□□□□ -0.45
CLIP1-206ENST00000535290 SRPK2P78362 688 aaKnown RBP12.21□□□□□ -0.45
CLIP1-206ENST00000535290 SLC27A3Q5K4L6 730 aa12.21□□□□□ -0.45
CLIP1-206ENST00000535290 CABP2Q9NPB3 220 aa12.21□□□□□ -0.45
CLIP1-206ENST00000535290 ARHGEF28Q8N1W1 1705 aaKnown RBP12.2□□□□□ -0.46
CLIP1-206ENST00000535290 CCDC7Q96M83 1385 aa12.2□□□□□ -0.46
CLIP1-206ENST00000535290 NHSQ6T4R5 1651 aa12.2□□□□□ -0.46
CLIP1-206ENST00000535290 CABP1Q9NZU7 370 aa12.2□□□□□ -0.46
CLIP1-206ENST00000535290 WNK3Q9BYP7 1800 aa12.2□□□□□ -0.46
CLIP1-206ENST00000535290 MSL1Q68DK7 614 aa12.19□□□□□ -0.46
CLIP1-206ENST00000535290 COL24A1Q17RW2 1714 aa12.18□□□□□ -0.46
CLIP1-206ENST00000535290 COL23A1Q86Y22 540 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-206ENST00000535290 PRELPP51888 382 aa12.17□□□□□ -0.46
CLIP1-206ENST00000535290 KCNH5Q8NCM2 988 aa12.17□□□□□ -0.46
CLIP1-206ENST00000535290 NLRP2Q9NX02 1062 aa12.17□□□□□ -0.46
CLIP1-206ENST00000535290 WWC3Q9ULE0 1092 aa12.17□□□□□ -0.46
CLIP1-206ENST00000535290 CD2APQ9Y5K6 639 aa12.17□□□□□ -0.46
CLIP1-206ENST00000535290 BTAF1O14981 1849 aa12.16□□□□□ -0.46
CLIP1-206ENST00000535290 IL2RBP14784 551 aa12.16□□□□□ -0.46
CLIP1-206ENST00000535290 RNF39Q9H2S5 420 aa12.16□□□□□ -0.46
CLIP1-206ENST00000535290 ABCC6O95255 1503 aa12.16□□□□□ -0.46
CLIP1-206ENST00000535290 TRPM1Q7Z4N2 1603 aa12.15□□□□□ -0.46
CLIP1-206ENST00000535290 TNS4Q8IZW8 715 aa12.15□□□□□ -0.46
CLIP1-206ENST00000535290 STAC3Q96MF2 364 aa12.15□□□□□ -0.46
CLIP1-206ENST00000535290 TOMM70O94826 608 aa12.14□□□□□ -0.47
CLIP1-206ENST00000535290 HTRA3P83110 453 aa12.14□□□□□ -0.47
CLIP1-206ENST00000535290 KAT6BQ8WYB5 2073 aa12.14□□□□□ -0.47
CLIP1-206ENST00000535290 ERBB3P21860 1342 aa12.13□□□□□ -0.47
CLIP1-206ENST00000535290 TTC21BQ7Z4L5 1316 aa12.13□□□□□ -0.47
CLIP1-206ENST00000535290 PRIM1P49642 420 aaKnown RBP12.13□□□□□ -0.47
CLIP1-206ENST00000535290 NBPF1Q3BBV0 1214 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms