RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 FKBPLQ9UIM3 349 aa11.66□□□□□ -0.54
SYNE1-232ENST00000535081 TTLL8A6PVC2 850 aa11.65□□□□□ -0.54
SYNE1-232ENST00000535081 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.65□□□□□ -0.54
SYNE1-232ENST00000535081 LRRN4Q8WUT4 740 aa11.65□□□□□ -0.54
SYNE1-232ENST00000535081 SLC10A4Q96EP9 437 aa11.65□□□□□ -0.54
SYNE1-232ENST00000535081 CBLBQ13191 982 aa11.64□□□□□ -0.55
SYNE1-232ENST00000535081 CDV3Q9UKY7 258 aaKnown RBP11.64□□□□□ -0.55
SYNE1-232ENST00000535081 Q6ZVU0 165 aa11.63□□□□□ -0.55
SYNE1-232ENST00000535081 KCTD15Q96SI1 283 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-232ENST00000535081 ZC3H4Q9UPT8 1303 aaKnown RBP11.61□□□□□ -0.55
SYNE1-232ENST00000535081 PTSQ03393 145 aa11.61□□□□□ -0.55
SYNE1-232ENST00000535081 ZBTB33Q86T24 672 aa11.61□□□□□ -0.55
SYNE1-232ENST00000535081 SPINT1O43278 529 aa11.6□□□□□ -0.55
SYNE1-232ENST00000535081 DHX9Q08211 1270 aaKnown RBP11.6□□□□□ -0.55
SYNE1-232ENST00000535081 NR6A1Q15406 480 aa11.6□□□□□ -0.55
SYNE1-232ENST00000535081 SKIV2LQ15477 1246 aaKnown RBP11.6□□□□□ -0.55
SYNE1-232ENST00000535081 FBXO31Q5XUX0 539 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-232ENST00000535081 FIGNL2A6NMB9 653 aa11.59□□□□□ -0.55
SYNE1-232ENST00000535081 SH3D19Q5HYK7 790 aa11.59□□□□□ -0.55
SYNE1-232ENST00000535081 KRT76Q01546 638 aa11.57□□□□□ -0.56
SYNE1-232ENST00000535081 INTS6LQ5JSJ4 861 aaKnown RBP11.57□□□□□ -0.56
SYNE1-232ENST00000535081 PPP2R2DQ66LE6 453 aa11.57□□□□□ -0.56
SYNE1-232ENST00000535081 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.57□□□□□ -0.56
SYNE1-232ENST00000535081 PTK2Q05397 1052 aa11.56□□□□□ -0.56
SYNE1-232ENST00000535081 GPR161Q8N6U8 529 aaKnown RBP11.56□□□□□ -0.56
SYNE1-232ENST00000535081 PROCA1Q8NCQ7 364 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-232ENST00000535081 OCSTAMPQ9BR26 566 aa11.56□□□□□ -0.56
SYNE1-232ENST00000535081 GPSM3Q9Y4H4 160 aa11.55□□□□□ -0.56
SYNE1-232ENST00000535081 CCDC155Q8N6L0 562 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 ADAM32Q8TC27 787 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 NANOS1Q8WY41 292 aaKnown RBP11.54□□□□□ -0.56
SYNE1-232ENST00000535081 DDRGK1Q96HY6 314 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 AGBL1Q96MI9 1066 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 CNTNAP3BQ96NU0 1288 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 CNTNAP3Q9BZ76 1288 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 KDM4CQ9H3R0 1056 aa11.54□□□□□ -0.56
SYNE1-232ENST00000535081 GPBP1L1Q9HC44 474 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-232ENST00000535081 ATP1B4Q9UN42 357 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-232ENST00000535081 AP1G2O75843 785 aa11.53□□□□□ -0.56
SYNE1-232ENST00000535081 CTSOP43234 321 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-232ENST00000535081 RELBQ01201 579 aa11.52□□□□□ -0.57
SYNE1-232ENST00000535081 NBPF20Q3BBV1 942 aa11.52□□□□□ -0.57
SYNE1-232ENST00000535081 FAM117AQ9C073 453 aa11.52□□□□□ -0.57
SYNE1-232ENST00000535081 SLC35F4A4IF30 521 aa11.51□□□□□ -0.57
SYNE1-232ENST00000535081 KCNMA1Q12791 1236 aa11.51□□□□□ -0.57
SYNE1-232ENST00000535081 INSM2Q96T92 566 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-232ENST00000535081 COL25A1Q9BXS0 654 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-232ENST00000535081 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
SYNE1-232ENST00000535081 EPS8L1Q8TE68 723 aa11.49□□□□□ -0.57
SYNE1-232ENST00000535081 POLMQ9NP87 494 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-232ENST00000535081 TMPRSS4Q9NRS4 437 aa11.49□□□□□ -0.57
SYNE1-232ENST00000535081 ITGA6P23229 1130 aa11.48□□□□□ -0.57
SYNE1-232ENST00000535081 ZNF784Q8NCA9 323 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-232ENST00000535081 RNF217Q8TC41 542 aa11.48□□□□□ -0.57
SYNE1-232ENST00000535081 HMX1Q9NP08 348 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-232ENST00000535081 USP17L8P0C7I0 530 aa11.47□□□□□ -0.57
SYNE1-232ENST00000535081 RAB15P59190 212 aa11.47□□□□□ -0.57
SYNE1-232ENST00000535081 RNFT1Q5M7Z0 435 aa11.47□□□□□ -0.57
SYNE1-232ENST00000535081 ZNF395Q9H8N7 513 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-232ENST00000535081 GSK3AP49840 483 aa11.46□□□□□ -0.57
SYNE1-232ENST00000535081 CDC14CA4D256 554 aa11.45□□□□□ -0.58
SYNE1-232ENST00000535081 ADH1AP07327 375 aa11.45□□□□□ -0.58
SYNE1-232ENST00000535081 DZIP3Q86Y13 1208 aaKnown RBP11.45□□□□□ -0.58
SYNE1-232ENST00000535081 SV2AQ7L0J3 742 aa11.44□□□□□ -0.58
SYNE1-232ENST00000535081 VWA5B2Q8N398 1253 aa11.44□□□□□ -0.58
SYNE1-232ENST00000535081 ADAMTS8Q9UP79 889 aa11.44□□□□□ -0.58
SYNE1-232ENST00000535081 RNF225M0QZC1 329 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-232ENST00000535081 ERVH48-1M5A8F1 160 aa11.43□□□□□ -0.58
SYNE1-232ENST00000535081 LILRA1O75019 489 aa11.43□□□□□ -0.58
SYNE1-232ENST00000535081 ZNF385CQ66K41 422 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-232ENST00000535081 SVOPQ8N4V2 548 aa11.43□□□□□ -0.58
SYNE1-232ENST00000535081 SENP3-EIF4A1A0A087X0R7 540 aa11.42□□□□□ -0.58
SYNE1-232ENST00000535081 FOXD4L5Q5VV16 416 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-232ENST00000535081 ESPNB1AK53 854 aa11.41□□□□□ -0.58
SYNE1-232ENST00000535081 RFC5P40937 340 aa11.41□□□□□ -0.58
SYNE1-232ENST00000535081 KCTD17Q8N5Z5 321 aa11.41□□□□□ -0.58
SYNE1-232ENST00000535081 SLURP2P0DP57 97 aa11.4□□□□□ -0.58
SYNE1-232ENST00000535081 ADD1P35611 737 aaKnown RBP11.4□□□□□ -0.58
SYNE1-232ENST00000535081 PTGIRP43119 386 aa11.4□□□□□ -0.58
SYNE1-232ENST00000535081 KDF1Q8NAX2 398 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-232ENST00000535081 RASSF7Q02833 373 aa11.39□□□□□ -0.59
SYNE1-232ENST00000535081 TMEM151AQ8N4L1 468 aa11.39□□□□□ -0.59
SYNE1-232ENST00000535081 SEPT12Q8IYM1 358 aa11.38□□□□□ -0.59
SYNE1-232ENST00000535081 WHAMMQ8TF30 809 aa11.38□□□□□ -0.59
SYNE1-232ENST00000535081 GDF11O95390 407 aa11.37□□□□□ -0.59
SYNE1-232ENST00000535081 CYLDQ9NQC7 956 aa11.37□□□□□ -0.59
SYNE1-232ENST00000535081 LYSMD3Q7Z3D4 306 aa11.36□□□□□ -0.59
SYNE1-232ENST00000535081 TRIM34Q9BYJ4 488 aa11.36□□□□□ -0.59
SYNE1-232ENST00000535081 ARHGEF15O94989 841 aa11.34□□□□□ -0.59
SYNE1-232ENST00000535081 TRIM52Q96A61 297 aa11.34□□□□□ -0.59
SYNE1-232ENST00000535081 LOC100996750A0A140TA64 210 aa11.33□□□□□ -0.6
SYNE1-232ENST00000535081 KRTAP4-6Q9BYQ5 205 aa11.33□□□□□ -0.6
SYNE1-232ENST00000535081 CUEDC1Q9NWM3 386 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-232ENST00000535081 ADAMTS2O95450 1211 aa11.32□□□□□ -0.6
SYNE1-232ENST00000535081 ZBBXA8MT70 800 aa11.31□□□□□ -0.6
SYNE1-232ENST00000535081 RNF144AP50876 292 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-232ENST00000535081 PRICKLE2Q7Z3G6 844 aa11.31□□□□□ -0.6
SYNE1-232ENST00000535081 ATP5J2-PTCD1G3V325 749 aa11.3□□□□□ -0.6
SYNE1-232ENST00000535081 SRSF11Q05519 484 aaKnown RBP11.3□□□□□ -0.6
SYNE1-232ENST00000535081 SUZ12Q15022 739 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms