RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 EVA1CP58658 441 aa20.79■□□□□ 0.92
CPSF1-208ENST00000532560 THSD7AQ9UPZ6 1657 aa20.79■□□□□ 0.92
CPSF1-208ENST00000532560 SPATA31A1Q5TZJ5 1347 aa20.78■□□□□ 0.92
CPSF1-208ENST00000532560 LARP1Q6PKG0 1096 aaKnown RBP20.77■□□□□ 0.92
CPSF1-208ENST00000532560 GGNBP2Q9H3C7 697 aa20.77■□□□□ 0.92
CPSF1-208ENST00000532560 AXIN2Q9Y2T1 843 aa20.77■□□□□ 0.92
CPSF1-208ENST00000532560 CRB1P82279 1406 aa20.77■□□□□ 0.91
CPSF1-208ENST00000532560 RGPD5Q99666 1765 aa20.77■□□□□ 0.91
CPSF1-208ENST00000532560 CGNL1Q0VF96 1302 aa20.77■□□□□ 0.91
CPSF1-208ENST00000532560 SEPT12Q8IYM1 358 aa20.75■□□□□ 0.91
CPSF1-208ENST00000532560 PANK3Q9H999 370 aa20.75■□□□□ 0.91
CPSF1-208ENST00000532560 BRWD3Q6RI45 1802 aa20.74■□□□□ 0.91
CPSF1-208ENST00000532560 FAM98CQ17RN3 349 aaKnown RBP20.74■□□□□ 0.91
CPSF1-208ENST00000532560 WDR17Q8IZU2 1322 aa20.74■□□□□ 0.91
CPSF1-208ENST00000532560 CCDC7Q96M83 1385 aa20.73■□□□□ 0.91
CPSF1-208ENST00000532560 ANKRD26Q9UPS8 1709 aa20.73■□□□□ 0.91
CPSF1-208ENST00000532560 BLMP54132 1417 aaPredicted RBP20.73■□□□□ 0.91
CPSF1-208ENST00000532560 BARGINQ6ZT62 677 aa20.73■□□□□ 0.91
CPSF1-208ENST00000532560 RTL1A6NKG5 1358 aa20.72■□□□□ 0.91
CPSF1-208ENST00000532560 TCP11L2Q8N4U5 519 aa20.72■□□□□ 0.91
CPSF1-208ENST00000532560 THRAP3Q9Y2W1 955 aaKnown RBP20.72■□□□□ 0.91
CPSF1-208ENST00000532560 ERBB3P21860 1342 aa20.71■□□□□ 0.91
CPSF1-208ENST00000532560 MAP3K19Q56UN5 1328 aa20.71■□□□□ 0.91
CPSF1-208ENST00000532560 NSD2O96028 1365 aa20.71■□□□□ 0.91
CPSF1-208ENST00000532560 A0A0G2JS52 829 aa20.7■□□□□ 0.9
CPSF1-208ENST00000532560 MYT1Q01538 1121 aa20.7■□□□□ 0.9
CPSF1-208ENST00000532560 USP35Q9P2H5 1018 aa20.7■□□□□ 0.9
CPSF1-208ENST00000532560 WASHC2AQ641Q2 1341 aa20.7■□□□□ 0.9
CPSF1-208ENST00000532560 WNK3Q9BYP7 1800 aa20.69■□□□□ 0.9
CPSF1-208ENST00000532560 TOM1L2Q6ZVM7 507 aa20.69■□□□□ 0.9
CPSF1-208ENST00000532560 IP6K1Q92551 441 aa20.69■□□□□ 0.9
CPSF1-208ENST00000532560 FAM208AQ9UK61 1670 aaKnown RBP20.68■□□□□ 0.9
CPSF1-208ENST00000532560 PARP4Q9UKK3 1724 aaKnown RBP20.68■□□□□ 0.9
CPSF1-208ENST00000532560 KIF24Q5T7B8 1368 aa20.68■□□□□ 0.9
CPSF1-208ENST00000532560 CSB-PGBD3P0DP91 1061 aa20.67■□□□□ 0.9
CPSF1-208ENST00000532560 FBLN1P23142 703 aa20.67■□□□□ 0.9
CPSF1-208ENST00000532560 KRT27Q7Z3Y8 459 aa20.67■□□□□ 0.9
CPSF1-208ENST00000532560 UPF1Q92900 1129 aaKnown RBP eCLIP20.67■□□□□ 0.9
CPSF1-208ENST00000532560 HOXC9P31274 260 aa20.66■□□□□ 0.9
CPSF1-208ENST00000532560 AMPHP49418 695 aa20.66■□□□□ 0.9
CPSF1-208ENST00000532560 RRS1Q15050 365 aaKnown RBP20.66■□□□□ 0.9
CPSF1-208ENST00000532560 CARD10Q9BWT7 1032 aa20.66■□□□□ 0.9
CPSF1-208ENST00000532560 PEAK1Q9H792 1746 aa20.65■□□□□ 0.9
CPSF1-208ENST00000532560 ANKRD24Q8TF21 1146 aa20.65■□□□□ 0.9
CPSF1-208ENST00000532560 KNSTRNQ9Y448 316 aa20.65■□□□□ 0.9
CPSF1-208ENST00000532560 FLT4P35916 1363 aa20.64■□□□□ 0.89
CPSF1-208ENST00000532560 LRRC37A3O60309 1634 aa20.64■□□□□ 0.89
CPSF1-208ENST00000532560 DISP2A7MBM2 1401 aa20.63■□□□□ 0.89
CPSF1-208ENST00000532560 AMER1Q5JTC6 1135 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-208ENST00000532560 CDCA7Q9BWT1 371 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-208ENST00000532560 NLRP2Q9NX02 1062 aa20.61■□□□□ 0.89
CPSF1-208ENST00000532560 EP400Q96L91 3159 aa20.6■□□□□ 0.89
CPSF1-208ENST00000532560 INSRP06213 1382 aa20.6■□□□□ 0.89
CPSF1-208ENST00000532560 PER1O15534 1290 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-208ENST00000532560 ZEB1P37275 1124 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-208ENST00000532560 EMILIN1Q9Y6C2 1016 aa20.6■□□□□ 0.89
CPSF1-208ENST00000532560 SMG6Q86US8 1419 aaKnown RBP20.6■□□□□ 0.89
CPSF1-208ENST00000532560 MAP2P11137 1827 aaKnown RBP20.59■□□□□ 0.89
CPSF1-208ENST00000532560 LTV1Q96GA3 475 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-208ENST00000532560 NPC1L1Q9UHC9 1359 aa20.57■□□□□ 0.88
CPSF1-208ENST00000532560 TNS2Q63HR2 1409 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 PDE3BQ13370 1112 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 HSP90AB2PQ58FF8 381 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 MORC1Q86VD1 984 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 CCDC125Q86Z20 511 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 POLKQ9UBT6 870 aa20.56■□□□□ 0.88
CPSF1-208ENST00000532560 RGPD2P0DJD1 1756 aa20.55■□□□□ 0.88
CPSF1-208ENST00000532560 DDB1Q16531 1140 aa20.55■□□□□ 0.88
CPSF1-208ENST00000532560 IL2RBP14784 551 aa20.54■□□□□ 0.88
CPSF1-208ENST00000532560 TNNT2P45379 298 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-208ENST00000532560 FAM182BQ5T319 152 aa20.53■□□□□ 0.88
CPSF1-208ENST00000532560 RGPD1P0DJD0 1748 aa20.53■□□□□ 0.88
CPSF1-208ENST00000532560 OVOS2A0A0G2JMS6 1433 aa20.53■□□□□ 0.88
CPSF1-208ENST00000532560 PPM1GO15355 546 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-208ENST00000532560 FAM196AQ6ZSG2 479 aa20.52■□□□□ 0.88
CPSF1-208ENST00000532560 NBPF6Q5VWK0 638 aa20.5■□□□□ 0.87
CPSF1-208ENST00000532560 NBPF4Q96M43 638 aa20.5■□□□□ 0.87
CPSF1-208ENST00000532560 BCL9O00512 1426 aa20.5■□□□□ 0.87
CPSF1-208ENST00000532560 NCAPD2Q15021 1401 aa20.5■□□□□ 0.87
CPSF1-208ENST00000532560 TNS1Q9HBL0 1735 aaKnown RBP20.5■□□□□ 0.87
CPSF1-208ENST00000532560 MEGF6O75095 1541 aa20.48■□□□□ 0.87
CPSF1-208ENST00000532560 EXOC5O00471 708 aa20.48■□□□□ 0.87
CPSF1-208ENST00000532560 CC2D1BQ5T0F9 858 aaKnown RBP20.48■□□□□ 0.87
CPSF1-208ENST00000532560 SF3B2Q13435 895 aaKnown RBP20.47■□□□□ 0.87
CPSF1-208ENST00000532560 MARCH10Q8NA82 808 aaPredicted RBP20.46■□□□□ 0.87
CPSF1-208ENST00000532560 USHBP1Q8N6Y0 703 aa20.45■□□□□ 0.86
CPSF1-208ENST00000532560 SBF2Q86WG5 1849 aa20.44■□□□□ 0.86
CPSF1-208ENST00000532560 EIF4A2Q14240 407 aaKnown RBP20.44■□□□□ 0.86
CPSF1-208ENST00000532560 SHANK3Q9BYB0 1731 aa20.44■□□□□ 0.86
CPSF1-208ENST00000532560 TRIM37O94972 964 aa20.42■□□□□ 0.86
CPSF1-208ENST00000532560 RAPGEF4Q8WZA2 1011 aa20.42■□□□□ 0.86
CPSF1-208ENST00000532560 BAG6P46379 1132 aa20.41■□□□□ 0.86
CPSF1-208ENST00000532560 EYA1Q99502 592 aa20.41■□□□□ 0.86
CPSF1-208ENST00000532560 IGSF1Q8N6C5 1336 aa20.41■□□□□ 0.86
CPSF1-208ENST00000532560 TATP17735 454 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-208ENST00000532560 PKD1L3Q7Z443 1732 aa20.4■□□□□ 0.86
CPSF1-208ENST00000532560 PLEKHG2Q9H7P9 1386 aa20.4■□□□□ 0.86
CPSF1-208ENST00000532560 MTHFSP49914 203 aa20.39■□□□□ 0.85
CPSF1-208ENST00000532560 DEFB132Q7Z7B7 95 aa20.39■□□□□ 0.85
CPSF1-208ENST00000532560 NHSQ6T4R5 1651 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms