RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 EDC4Q6P2E9 1401 aaKnown RBP24.1■■□□□ 1.45
PHRF1-204ENST00000532550 PDE3BQ13370 1112 aa24.1■■□□□ 1.45
PHRF1-204ENST00000532550 TOM1L2Q6ZVM7 507 aa24.1■■□□□ 1.45
PHRF1-204ENST00000532550 THSD7AQ9UPZ6 1657 aa24.08■■□□□ 1.45
PHRF1-204ENST00000532550 CRB1P82279 1406 aa24.08■■□□□ 1.44
PHRF1-204ENST00000532550 CSB-PGBD3P0DP91 1061 aa24.07■■□□□ 1.44
PHRF1-204ENST00000532550 DEFB132Q7Z7B7 95 aa24.07■■□□□ 1.44
PHRF1-204ENST00000532550 FAM196AQ6ZSG2 479 aa24.06■■□□□ 1.44
PHRF1-204ENST00000532550 WDR17Q8IZU2 1322 aa24.06■■□□□ 1.44
PHRF1-204ENST00000532550 COL18A1P39060 1754 aa24.06■■□□□ 1.44
PHRF1-204ENST00000532550 BAG6P46379 1132 aa24.04■■□□□ 1.44
PHRF1-204ENST00000532550 NFAT5O94916 1531 aa24.03■■□□□ 1.44
PHRF1-204ENST00000532550 COG3Q96JB2 828 aa24.02■■□□□ 1.44
PHRF1-204ENST00000532550 ANKRD36BQ8N2N9 1353 aa24.02■■□□□ 1.44
PHRF1-204ENST00000532550 RGPD5Q99666 1765 aa24.01■■□□□ 1.43
PHRF1-204ENST00000532550 CARD10Q9BWT7 1032 aa24■■□□□ 1.43
PHRF1-204ENST00000532550 USP54Q70EL1 1684 aa23.99■■□□□ 1.43
PHRF1-204ENST00000532550 CDCA7Q9BWT1 371 aaPredicted RBP23.99■■□□□ 1.43
PHRF1-204ENST00000532550 TRIM37O94972 964 aa23.98■■□□□ 1.43
PHRF1-204ENST00000532550 DDB1Q16531 1140 aa23.98■■□□□ 1.43
PHRF1-204ENST00000532550 OVOS2A0A0J9YW53 1432 aa23.97■■□□□ 1.43
PHRF1-204ENST00000532550 EIF4G2P78344 907 aaKnown RBP eCLIP23.97■■□□□ 1.43
PHRF1-204ENST00000532550 OVOS2Q6IE36 1432 aa23.97■■□□□ 1.43
PHRF1-204ENST00000532550 EN1Q05925 392 aaPredicted RBP23.96■■□□□ 1.43
PHRF1-204ENST00000532550 ABCC6O95255 1503 aa23.95■■□□□ 1.43
PHRF1-204ENST00000532550 C11orf95C9JLR9 678 aaPredicted RBP23.95■■□□□ 1.42
PHRF1-204ENST00000532550 RGPD1P0DJD0 1748 aa23.94■■□□□ 1.42
PHRF1-204ENST00000532550 FYB1O15117 783 aa23.94■■□□□ 1.42
PHRF1-204ENST00000532550 NLRP2Q9NX02 1062 aa23.94■■□□□ 1.42
PHRF1-204ENST00000532550 LTN1O94822 1766 aa23.93■■□□□ 1.42
PHRF1-204ENST00000532550 PARP4Q9UKK3 1724 aaKnown RBP23.93■■□□□ 1.42
PHRF1-204ENST00000532550 IP6K1Q92551 441 aa23.93■■□□□ 1.42
PHRF1-204ENST00000532550 GGNBP2Q9H3C7 697 aa23.93■■□□□ 1.42
PHRF1-204ENST00000532550 CCDC7Q96M83 1385 aa23.92■■□□□ 1.42
PHRF1-204ENST00000532550 ERBB3P21860 1342 aa23.92■■□□□ 1.42
PHRF1-204ENST00000532550 APBA3O96018 575 aa23.92■■□□□ 1.42
PHRF1-204ENST00000532550 ANKRD24Q8TF21 1146 aa23.92■■□□□ 1.42
PHRF1-204ENST00000532550 POLR3GLQ9BT43 218 aa23.92■■□□□ 1.42
PHRF1-204ENST00000532550 EXOC5O00471 708 aa23.91■■□□□ 1.42
PHRF1-204ENST00000532550 HSPA5P11021 654 aaKnown RBP23.91■■□□□ 1.42
PHRF1-204ENST00000532550 AMPHP49418 695 aa23.9■■□□□ 1.42
PHRF1-204ENST00000532550 FBLN1P23142 703 aa23.89■■□□□ 1.41
PHRF1-204ENST00000532550 LTV1Q96GA3 475 aaPredicted RBP23.88■■□□□ 1.41
PHRF1-204ENST00000532550 CARD14Q9BXL6 1004 aa23.88■■□□□ 1.41
PHRF1-204ENST00000532550 MAP3K19Q56UN5 1328 aa23.87■■□□□ 1.41
PHRF1-204ENST00000532550 EZH2Q15910 746 aaKnown RBP23.87■■□□□ 1.41
PHRF1-204ENST00000532550 OVOS2A0A0G2JMS6 1433 aa23.86■■□□□ 1.41
PHRF1-204ENST00000532550 DISP2A7MBM2 1401 aa23.86■■□□□ 1.41
PHRF1-204ENST00000532550 MARCH10Q8NA82 808 aaPredicted RBP23.86■■□□□ 1.41
PHRF1-204ENST00000532550 HOXC9P31274 260 aa23.85■■□□□ 1.41
PHRF1-204ENST00000532550 CAMKK2Q96RR4 588 aa23.85■■□□□ 1.41
PHRF1-204ENST00000532550 TNS1Q9HBL0 1735 aaKnown RBP23.84■■□□□ 1.41
PHRF1-204ENST00000532550 IL2RBP14784 551 aa23.84■■□□□ 1.41
PHRF1-204ENST00000532550 LRRC37A3O60309 1634 aa23.84■■□□□ 1.41
PHRF1-204ENST00000532550 WNK3Q9BYP7 1800 aa23.83■■□□□ 1.41
PHRF1-204ENST00000532550 RRS1Q15050 365 aaKnown RBP23.83■■□□□ 1.41
PHRF1-204ENST00000532550 NSD3Q9BZ95 1437 aa23.82■■□□□ 1.4
PHRF1-204ENST00000532550 PARD3Q8TEW0 1356 aa23.8■■□□□ 1.4
PHRF1-204ENST00000532550 MYOM1P52179 1685 aa23.8■■□□□ 1.4
PHRF1-204ENST00000532550 BCL11BQ9C0K0 894 aaPredicted RBP23.8■■□□□ 1.4
PHRF1-204ENST00000532550 KIF20BQ96Q89 1820 aa23.79■■□□□ 1.4
PHRF1-204ENST00000532550 CGNL1Q0VF96 1302 aa23.79■■□□□ 1.4
PHRF1-204ENST00000532550 PSDA5PKW4 1024 aaPredicted RBP23.78■■□□□ 1.4
PHRF1-204ENST00000532550 PEAK1Q9H792 1746 aa23.78■■□□□ 1.4
PHRF1-204ENST00000532550 RTL1A6NKG5 1358 aa23.78■■□□□ 1.4
PHRF1-204ENST00000532550 BCL9O00512 1426 aa23.76■■□□□ 1.39
PHRF1-204ENST00000532550 SBF2Q86WG5 1849 aa23.76■■□□□ 1.39
PHRF1-204ENST00000532550 TNS2Q63HR2 1409 aa23.76■■□□□ 1.39
PHRF1-204ENST00000532550 PLSCR1O15162 318 aa23.75■■□□□ 1.39
PHRF1-204ENST00000532550 KAT6BQ8WYB5 2073 aa23.74■■□□□ 1.39
PHRF1-204ENST00000532550 R3HDM1Q15032 1099 aaKnown RBP23.74■■□□□ 1.39
PHRF1-204ENST00000532550 HSP90AB2PQ58FF8 381 aa23.74■■□□□ 1.39
PHRF1-204ENST00000532550 NBPF14Q5TI25 921 aa23.74■■□□□ 1.39
PHRF1-204ENST00000532550 PANK3Q9H999 370 aa23.74■■□□□ 1.39
PHRF1-204ENST00000532550 FAM208AQ9UK61 1670 aaKnown RBP23.73■■□□□ 1.39
PHRF1-204ENST00000532550 PTF1AQ7RTS3 328 aa23.73■■□□□ 1.39
PHRF1-204ENST00000532550 KIF24Q5T7B8 1368 aa23.72■■□□□ 1.39
PHRF1-204ENST00000532550 SMG6Q86US8 1419 aaKnown RBP23.72■■□□□ 1.39
PHRF1-204ENST00000532550 SRCAPQ6ZRS2 3230 aa23.72■■□□□ 1.39
PHRF1-204ENST00000532550 FLT4P35916 1363 aa23.71■■□□□ 1.39
PHRF1-204ENST00000532550 PPM1GO15355 546 aaPredicted RBP23.71■■□□□ 1.39
PHRF1-204ENST00000532550 NBPF6Q5VWK0 638 aa23.71■■□□□ 1.39
PHRF1-204ENST00000532550 DDX54Q8TDD1 881 aaKnown RBP23.71■■□□□ 1.39
PHRF1-204ENST00000532550 NBPF4Q96M43 638 aa23.71■■□□□ 1.39
PHRF1-204ENST00000532550 INSRP06213 1382 aa23.7■■□□□ 1.38
PHRF1-204ENST00000532550 ACSBG1Q96GR2 724 aa23.7■■□□□ 1.38
PHRF1-204ENST00000532550 EMILIN1Q9Y6C2 1016 aa23.7■■□□□ 1.38
PHRF1-204ENST00000532550 KCNQ2O43526 872 aa23.68■■□□□ 1.38
PHRF1-204ENST00000532550 ZCRB1Q8TBF4 217 aaKnown RBP23.68■■□□□ 1.38
PHRF1-204ENST00000532550 RGPD2P0DJD1 1756 aa23.68■■□□□ 1.38
PHRF1-204ENST00000532550 USHBP1Q8N6Y0 703 aa23.67■■□□□ 1.38
PHRF1-204ENST00000532550 RAPGEF4Q8WZA2 1011 aa23.67■■□□□ 1.38
PHRF1-204ENST00000532550 TNNT2P45379 298 aaPredicted RBP23.66■■□□□ 1.38
PHRF1-204ENST00000532550 RREB1Q92766 1687 aa23.65■■□□□ 1.38
PHRF1-204ENST00000532550 MAP2P11137 1827 aaKnown RBP23.65■■□□□ 1.38
PHRF1-204ENST00000532550 TATP17735 454 aaPredicted RBP23.64■■□□□ 1.37
PHRF1-204ENST00000532550 POLKQ9UBT6 870 aa23.64■■□□□ 1.37
PHRF1-204ENST00000532550 KNSTRNQ9Y448 316 aa23.64■■□□□ 1.37
PHRF1-204ENST00000532550 WASHC2AQ641Q2 1341 aa23.63■■□□□ 1.37
PHRF1-204ENST00000532550 PROM2Q8N271 834 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms