RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 PTGER2P43116 358 aa13.15□□□□□ -0.3
USF1-210ENST00000531842 BCL11BQ9C0K0 894 aaPredicted RBP13.15□□□□□ -0.3
USF1-210ENST00000531842 SLIT3O75094 1523 aa13.14□□□□□ -0.31
USF1-210ENST00000531842 SRPK2P78362 688 aaKnown RBP13.14□□□□□ -0.31
USF1-210ENST00000531842 DDB1Q16531 1140 aa13.14□□□□□ -0.31
USF1-210ENST00000531842 TOM1L2Q6ZVM7 507 aa13.14□□□□□ -0.31
USF1-210ENST00000531842 NLRP13Q86W25 1043 aa13.14□□□□□ -0.31
USF1-210ENST00000531842 ZNF784Q8NCA9 323 aaPredicted RBP13.14□□□□□ -0.31
USF1-210ENST00000531842 THRAP3Q9Y2W1 955 aaKnown RBP13.14□□□□□ -0.31
USF1-210ENST00000531842 KIAA1210Q9ULL0 1709 aa13.13□□□□□ -0.31
USF1-210ENST00000531842 PLSCR1O15162 318 aa13.12□□□□□ -0.31
USF1-210ENST00000531842 NLRP6P59044 892 aa13.12□□□□□ -0.31
USF1-210ENST00000531842 FHDC1Q9C0D6 1143 aaPredicted RBP13.12□□□□□ -0.31
USF1-210ENST00000531842 CABP1Q9NZU7 370 aa13.12□□□□□ -0.31
USF1-210ENST00000531842 DCAF8L1A6NGE4 600 aa13.11□□□□□ -0.31
USF1-210ENST00000531842 GOLGB1Q14789 3259 aaKnown RBP13.11□□□□□ -0.31
USF1-210ENST00000531842 USP6P35125 1406 aa13.11□□□□□ -0.31
USF1-210ENST00000531842 AATKQ6ZMQ8 1374 aa13.1□□□□□ -0.31
USF1-210ENST00000531842 TXNRD1Q16881 649 aa13.1□□□□□ -0.31
USF1-210ENST00000531842 ACSBG1Q96GR2 724 aa13.1□□□□□ -0.31
USF1-210ENST00000531842 BTAF1O14981 1849 aa13.09□□□□□ -0.31
USF1-210ENST00000531842 SYT17Q9BSW7 474 aa13.09□□□□□ -0.31
USF1-210ENST00000531842 WDR17Q8IZU2 1322 aa13.09□□□□□ -0.31
USF1-210ENST00000531842 NHSQ6T4R5 1651 aa13.08□□□□□ -0.31
USF1-210ENST00000531842 CPSF1Q10570 1443 aaKnown RBP13.08□□□□□ -0.32
USF1-210ENST00000531842 SENP3-EIF4A1A0A087X0R7 540 aa13.08□□□□□ -0.32
USF1-210ENST00000531842 TUBGCP6Q96RT7 1819 aa13.08□□□□□ -0.32
USF1-210ENST00000531842 CENPJQ9HC77 1338 aaPredicted RBP13.08□□□□□ -0.32
USF1-210ENST00000531842 PAPPAQ13219 1627 aa13.07□□□□□ -0.32
USF1-210ENST00000531842 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
USF1-210ENST00000531842 SGIP1Q9BQI5 828 aa13.07□□□□□ -0.32
USF1-210ENST00000531842 STK32BQ9NY57 414 aa13.07□□□□□ -0.32
USF1-210ENST00000531842 CSB-PGBD3P0DP91 1061 aa13.06□□□□□ -0.32
USF1-210ENST00000531842 LTN1O94822 1766 aa13.05□□□□□ -0.32
USF1-210ENST00000531842 NFAT5O94916 1531 aa13.05□□□□□ -0.32
USF1-210ENST00000531842 ZNF827Q17R98 1081 aa13.05□□□□□ -0.32
USF1-210ENST00000531842 ARHGEF25Q86VW2 580 aa13.05□□□□□ -0.32
USF1-210ENST00000531842 TRPM1Q7Z4N2 1603 aa13.04□□□□□ -0.32
USF1-210ENST00000531842 CEP350Q5VT06 3117 aa13.04□□□□□ -0.32
USF1-210ENST00000531842 KCNQ4P56696 695 aa13.03□□□□□ -0.32
USF1-210ENST00000531842 KLHL34Q8N239 644 aa13.03□□□□□ -0.32
USF1-210ENST00000531842 TTC21BQ7Z4L5 1316 aa13.03□□□□□ -0.32
USF1-210ENST00000531842 EXOC5O00471 708 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 C1QTNF8P60827 252 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 STAC3Q96MF2 364 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 ARXQ96QS3 562 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 CARD10Q9BWT7 1032 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 MTFR1LQ9H019 292 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 LRRC4BQ9NT99 713 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 TNS2Q63HR2 1409 aa13.02□□□□□ -0.33
USF1-210ENST00000531842 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
USF1-210ENST00000531842 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
USF1-210ENST00000531842 BCL9O00512 1426 aa13.01□□□□□ -0.33
USF1-210ENST00000531842 MON2Q7Z3U7 1717 aa13.01□□□□□ -0.33
USF1-210ENST00000531842 RGPD2P0DJD1 1756 aa13□□□□□ -0.33
USF1-210ENST00000531842 SHANK3Q9BYB0 1731 aa12.99□□□□□ -0.33
USF1-210ENST00000531842 ABCC6O95255 1503 aa12.99□□□□□ -0.33
USF1-210ENST00000531842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.99□□□□□ -0.33
USF1-210ENST00000531842 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
USF1-210ENST00000531842 GPR162Q16538 588 aa12.98□□□□□ -0.33
USF1-210ENST00000531842 NLGN2Q8NFZ4 835 aa12.98□□□□□ -0.33
USF1-210ENST00000531842 NLRP2Q9NX02 1062 aa12.98□□□□□ -0.33
USF1-210ENST00000531842 COL24A1Q17RW2 1714 aa12.97□□□□□ -0.33
USF1-210ENST00000531842 DOT1LQ8TEK3 1739 aa12.97□□□□□ -0.33
USF1-210ENST00000531842 CDCA7Q9BWT1 371 aaPredicted RBP12.97□□□□□ -0.33
USF1-210ENST00000531842 QSER1Q2KHR3 1735 aa12.96□□□□□ -0.33
USF1-210ENST00000531842 KTN1Q86UP2 1357 aaKnown RBP12.96□□□□□ -0.33
USF1-210ENST00000531842 NME9Q86XW9 330 aa12.96□□□□□ -0.33
USF1-210ENST00000531842 CCDC7Q96M83 1385 aa12.95□□□□□ -0.34
USF1-210ENST00000531842 EVC2Q86UK5 1308 aa12.95□□□□□ -0.34
USF1-210ENST00000531842 KCNH5Q8NCM2 988 aa12.95□□□□□ -0.34
USF1-210ENST00000531842 L3MBTL2Q969R5 705 aa12.95□□□□□ -0.34
USF1-210ENST00000531842 ERBB3P21860 1342 aa12.94□□□□□ -0.34
USF1-210ENST00000531842 PNPLA7Q6ZV29 1317 aa12.94□□□□□ -0.34
USF1-210ENST00000531842 USP54Q70EL1 1684 aa12.94□□□□□ -0.34
USF1-210ENST00000531842 CD163L1Q9NR16 1453 aa12.94□□□□□ -0.34
USF1-210ENST00000531842 AKT1S1Q96B36 256 aa12.94□□□□□ -0.34
USF1-210ENST00000531842 IL2RBP14784 551 aa12.93□□□□□ -0.34
USF1-210ENST00000531842 DDX54Q8TDD1 881 aaKnown RBP12.93□□□□□ -0.34
USF1-210ENST00000531842 ANKRD24Q8TF21 1146 aa12.93□□□□□ -0.34
USF1-210ENST00000531842 LTV1Q96GA3 475 aaPredicted RBP12.93□□□□□ -0.34
USF1-210ENST00000531842 SIN3AQ96ST3 1273 aa12.93□□□□□ -0.34
USF1-210ENST00000531842 LY75O60449 1722 aa12.93□□□□□ -0.34
USF1-210ENST00000531842 MAP3K5Q99683 1374 aa12.93□□□□□ -0.34
USF1-210ENST00000531842 TTC21AQ8NDW8 1320 aa12.92□□□□□ -0.34
USF1-210ENST00000531842 GIGYF1O75420 1035 aaPredicted RBP12.92□□□□□ -0.34
USF1-210ENST00000531842 YBX3P16989 372 aaKnown RBP eCLIP12.92□□□□□ -0.34
USF1-210ENST00000531842 FBLN1P23142 703 aa12.92□□□□□ -0.34
USF1-210ENST00000531842 MSL1Q68DK7 614 aa12.91□□□□□ -0.34
USF1-210ENST00000531842 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
USF1-210ENST00000531842 SBNO2Q9Y2G9 1366 aa12.91□□□□□ -0.34
USF1-210ENST00000531842 FAM208AQ9UK61 1670 aaKnown RBP12.9□□□□□ -0.34
USF1-210ENST00000531842 SYTL4Q96C24 671 aaPredicted RBP12.9□□□□□ -0.34
USF1-210ENST00000531842 PRIM1P49642 420 aaKnown RBP12.89□□□□□ -0.35
USF1-210ENST00000531842 IFFO2Q5TF58 517 aa12.89□□□□□ -0.35
USF1-210ENST00000531842 WWC3Q9ULE0 1092 aa12.89□□□□□ -0.35
USF1-210ENST00000531842 ROCK2O75116 1388 aaKnown RBP12.89□□□□□ -0.35
USF1-210ENST00000531842 NSD2O96028 1365 aa12.89□□□□□ -0.35
USF1-210ENST00000531842 NEUROD1Q13562 356 aa12.88□□□□□ -0.35
USF1-210ENST00000531842 TFCP2L1Q9NZI6 479 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms