RNA–Protein interactions for RNA: ENST00000531303.5

SMPD1-205, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,451 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-205ENST00000531303 LTV1Q96GA3 475 aaPredicted RBP25.5■■□□□ 1.67
SMPD1-205ENST00000531303 PRDM11Q9NQV5 511 aa25.5■■□□□ 1.67
SMPD1-205ENST00000531303 COL3A1P02461 1466 aaPredicted RBP25.49■■□□□ 1.67
SMPD1-205ENST00000531303 ADAMTS2O95450 1211 aa25.48■■□□□ 1.67
SMPD1-205ENST00000531303 WDR43Q15061 677 aaKnown RBP eCLIP25.48■■□□□ 1.67
SMPD1-205ENST00000531303 RGPD5Q99666 1765 aa25.48■■□□□ 1.67
SMPD1-205ENST00000531303 U2SURPO15042 1029 aaKnown RBP25.47■■□□□ 1.67
SMPD1-205ENST00000531303 AXIN2Q9Y2T1 843 aa25.47■■□□□ 1.67
SMPD1-205ENST00000531303 RTL1A6NKG5 1358 aa25.47■■□□□ 1.67
SMPD1-205ENST00000531303 CPDO75976 1380 aa25.47■■□□□ 1.67
SMPD1-205ENST00000531303 INSRP06213 1382 aa25.47■■□□□ 1.67
SMPD1-205ENST00000531303 KIF24Q5T7B8 1368 aa25.47■■□□□ 1.67
SMPD1-205ENST00000531303 EIF4A2Q14240 407 aaKnown RBP25.46■■□□□ 1.67
SMPD1-205ENST00000531303 FBXO41Q8TF61 875 aa25.45■■□□□ 1.66
SMPD1-205ENST00000531303 NUDCQ9Y266 331 aa25.45■■□□□ 1.66
SMPD1-205ENST00000531303 FAM83GA6ND36 823 aa25.44■■□□□ 1.66
SMPD1-205ENST00000531303 IL13P35225 146 aa25.44■■□□□ 1.66
SMPD1-205ENST00000531303 COL18A1P39060 1754 aa25.43■■□□□ 1.66
SMPD1-205ENST00000531303 U2AF1L5P0DN76 240 aaPredicted RBP25.42■■□□□ 1.66
SMPD1-205ENST00000531303 U2AF1Q01081 240 aaKnown RBP eCLIP25.42■■□□□ 1.66
SMPD1-205ENST00000531303 ADAMTS8Q9UP79 889 aa25.42■■□□□ 1.66
SMPD1-205ENST00000531303 ANKRD24Q8TF21 1146 aa25.4■■□□□ 1.66
SMPD1-205ENST00000531303 SPATA31A6Q5VVP1 1343 aa25.39■■□□□ 1.66
SMPD1-205ENST00000531303 BLMP54132 1417 aaPredicted RBP25.39■■□□□ 1.66
SMPD1-205ENST00000531303 CSB-PGBD3P0DP91 1061 aa25.38■■□□□ 1.65
SMPD1-205ENST00000531303 YTHDC1Q96MU7 727 aaKnown RBP25.37■■□□□ 1.65
SMPD1-205ENST00000531303 CAMTA1Q9Y6Y1 1673 aa25.37■■□□□ 1.65
SMPD1-205ENST00000531303 RGPD2P0DJD1 1756 aa25.36■■□□□ 1.65
SMPD1-205ENST00000531303 HMOX1P09601 288 aa25.36■■□□□ 1.65
SMPD1-205ENST00000531303 COL14A1Q05707 1796 aaKnown RBP25.36■■□□□ 1.65
SMPD1-205ENST00000531303 EYA1Q99502 592 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 STRN4Q9NRL3 753 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 BTG4Q9NY30 223 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 LMO7Q8WWI1 1683 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 LRP6O75581 1613 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 ABCC6O95255 1503 aa25.35■■□□□ 1.65
SMPD1-205ENST00000531303 SENP3-EIF4A1A0A087X0R7 540 aa25.34■■□□□ 1.65
SMPD1-205ENST00000531303 EVA1CP58658 441 aa25.34■■□□□ 1.65
SMPD1-205ENST00000531303 CCDC146Q8IYE0 955 aa25.34■■□□□ 1.65
SMPD1-205ENST00000531303 ERBB3P21860 1342 aa25.34■■□□□ 1.65
SMPD1-205ENST00000531303 MEX3CQ5U5Q3 659 aaKnown RBP25.34■■□□□ 1.65
SMPD1-205ENST00000531303 USHBP1Q8N6Y0 703 aa25.34■■□□□ 1.65
SMPD1-205ENST00000531303 SULT6B1Q6IMI4 303 aa25.33■■□□□ 1.65
SMPD1-205ENST00000531303 C8orf37Q96NL8 207 aa25.33■■□□□ 1.65
SMPD1-205ENST00000531303 NBPF6Q5VWK0 638 aa25.32■■□□□ 1.64
SMPD1-205ENST00000531303 AEBP1Q8IUX7 1158 aa25.32■■□□□ 1.64
SMPD1-205ENST00000531303 NBPF4Q96M43 638 aa25.32■■□□□ 1.64
SMPD1-205ENST00000531303 NLRP2Q9NX02 1062 aa25.32■■□□□ 1.64
SMPD1-205ENST00000531303 NGLY1Q96IV0 654 aa25.31■■□□□ 1.64
SMPD1-205ENST00000531303 RGPD1P0DJD0 1748 aa25.31■■□□□ 1.64
SMPD1-205ENST00000531303 PLCH1Q4KWH8 1693 aa25.31■■□□□ 1.64
SMPD1-205ENST00000531303 COL5A2P05997 1499 aaPredicted RBP25.29■■□□□ 1.64
SMPD1-205ENST00000531303 IGSF1Q8N6C5 1336 aa25.29■■□□□ 1.64
SMPD1-205ENST00000531303 PRKAR2BP31323 418 aa25.28■■□□□ 1.64
SMPD1-205ENST00000531303 LARP1Q6PKG0 1096 aaKnown RBP25.28■■□□□ 1.64
SMPD1-205ENST00000531303 TOM1L2Q6ZVM7 507 aa25.28■■□□□ 1.64
SMPD1-205ENST00000531303 FCHSD2O94868 740 aa25.27■■□□□ 1.64
SMPD1-205ENST00000531303 RSPH6AQ9H0K4 717 aa25.27■■□□□ 1.64
SMPD1-205ENST00000531303 WDR17Q8IZU2 1322 aa25.26■■□□□ 1.63
SMPD1-205ENST00000531303 HNRNPUQ00839 825 aaKnown RBP eCLIP25.24■■□□□ 1.63
SMPD1-205ENST00000531303 RUNDC1Q96C34 613 aa25.24■■□□□ 1.63
SMPD1-205ENST00000531303 FAM208AQ9UK61 1670 aaKnown RBP25.24■■□□□ 1.63
SMPD1-205ENST00000531303 PNNQ9H307 717 aaKnown RBP25.23■■□□□ 1.63
SMPD1-205ENST00000531303 PLEKHF1Q96S99 279 aa25.22■■□□□ 1.63
SMPD1-205ENST00000531303 USP35Q9P2H5 1018 aa25.22■■□□□ 1.63
SMPD1-205ENST00000531303 MAPK8IP3Q9UPT6 1336 aa25.22■■□□□ 1.63
SMPD1-205ENST00000531303 NWD2Q9ULI1 1742 aa25.22■■□□□ 1.63
SMPD1-205ENST00000531303 SLIT2O94813 1529 aa25.22■■□□□ 1.63
SMPD1-205ENST00000531303 SALL2Q9Y467 1007 aaPredicted RBP25.21■■□□□ 1.63
SMPD1-205ENST00000531303 NRAPQ86VF7 1730 aa25.21■■□□□ 1.63
SMPD1-205ENST00000531303 APAF1O14727 1248 aa25.21■■□□□ 1.63
SMPD1-205ENST00000531303 NEFMP07197 916 aa25.21■■□□□ 1.63
SMPD1-205ENST00000531303 PHACTR3Q96KR7 559 aa25.21■■□□□ 1.63
SMPD1-205ENST00000531303 CCDC9Q9Y3X0 531 aaKnown RBP25.2■■□□□ 1.62
SMPD1-205ENST00000531303 KDRP35968 1356 aa25.19■■□□□ 1.62
SMPD1-205ENST00000531303 CARD10Q9BWT7 1032 aa25.19■■□□□ 1.62
SMPD1-205ENST00000531303 CRB1P82279 1406 aa25.18■■□□□ 1.62
SMPD1-205ENST00000531303 NEUROD2Q15784 382 aa25.18■■□□□ 1.62
SMPD1-205ENST00000531303 UNC5CLQ8IV45 518 aa25.18■■□□□ 1.62
SMPD1-205ENST00000531303 FNBP4Q8N3X1 1017 aaPredicted RBP25.18■■□□□ 1.62
SMPD1-205ENST00000531303 TCP11L2Q8N4U5 519 aa25.18■■□□□ 1.62
SMPD1-205ENST00000531303 USP21Q9UK80 565 aa25.18■■□□□ 1.62
SMPD1-205ENST00000531303 RRP7AQ9Y3A4 280 aaKnown RBP25.18■■□□□ 1.62
SMPD1-205ENST00000531303 AFF2P51816 1311 aa25.17■■□□□ 1.62
SMPD1-205ENST00000531303 BCL9LQ86UU0 1499 aa25.16■■□□□ 1.62
SMPD1-205ENST00000531303 RAPGEF4Q8WZA2 1011 aa25.15■■□□□ 1.62
SMPD1-205ENST00000531303 NCAPD2Q15021 1401 aa25.15■■□□□ 1.62
SMPD1-205ENST00000531303 TATP17735 454 aaPredicted RBP25.12■■□□□ 1.61
SMPD1-205ENST00000531303 TMPOP42166 694 aaKnown RBP25.11■■□□□ 1.61
SMPD1-205ENST00000531303 SPATA31A1Q5TZJ5 1347 aa25.1■■□□□ 1.61
SMPD1-205ENST00000531303 MTHFSDQ2M296 383 aaKnown RBP25.1■■□□□ 1.61
SMPD1-205ENST00000531303 MEGF6O75095 1541 aa25.1■■□□□ 1.61
SMPD1-205ENST00000531303 SPATA31A5Q5VU36 1347 aa25.1■■□□□ 1.61
SMPD1-205ENST00000531303 SPATA31A7Q8IWB4 1347 aa25.1■■□□□ 1.61
SMPD1-205ENST00000531303 RIPK4P57078 832 aa25.09■■□□□ 1.61
SMPD1-205ENST00000531303 VPS72Q15906 364 aa25.09■■□□□ 1.61
SMPD1-205ENST00000531303 NFE2L2Q16236 605 aa25.09■■□□□ 1.61
SMPD1-205ENST00000531303 IL2RBP14784 551 aa25.09■■□□□ 1.61
SMPD1-205ENST00000531303 PLEKHO1Q53GL0 409 aaPredicted RBP25.09■■□□□ 1.61
SMPD1-205ENST00000531303 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms