RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 SHANK3Q9BYB0 1731 aa12.42□□□□□ -0.42
CD44-232ENST00000531118 USP35Q9P2H5 1018 aa12.42□□□□□ -0.42
CD44-232ENST00000531118 PTGER2P43116 358 aa12.41□□□□□ -0.42
CD44-232ENST00000531118 RGL3Q3MIN7 710 aa12.41□□□□□ -0.42
CD44-232ENST00000531118 ARHGEF28Q8N1W1 1705 aaKnown RBP12.4□□□□□ -0.42
CD44-232ENST00000531118 ZBTB7AO95365 584 aa12.4□□□□□ -0.42
CD44-232ENST00000531118 PDGFDQ9GZP0 370 aaPredicted RBP12.39□□□□□ -0.43
CD44-232ENST00000531118 C14orf93Q9H972 538 aaKnown RBP12.39□□□□□ -0.43
CD44-232ENST00000531118 PAPPAQ13219 1627 aa12.39□□□□□ -0.43
CD44-232ENST00000531118 COL5A2P05997 1499 aaPredicted RBP12.39□□□□□ -0.43
CD44-232ENST00000531118 CEP350Q5VT06 3117 aa12.39□□□□□ -0.43
CD44-232ENST00000531118 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
CD44-232ENST00000531118 PRR29P0C7W0 189 aa12.38□□□□□ -0.43
CD44-232ENST00000531118 VASPP50552 380 aaPredicted RBP12.38□□□□□ -0.43
CD44-232ENST00000531118 TCP11L2Q8N4U5 519 aa12.38□□□□□ -0.43
CD44-232ENST00000531118 FHDC1Q9C0D6 1143 aaPredicted RBP12.38□□□□□ -0.43
CD44-232ENST00000531118 GIGYF1O75420 1035 aaPredicted RBP12.37□□□□□ -0.43
CD44-232ENST00000531118 CFAP70Q5T0N1 1121 aa12.37□□□□□ -0.43
CD44-232ENST00000531118 LARP1Q6PKG0 1096 aaKnown RBP12.37□□□□□ -0.43
CD44-232ENST00000531118 HIRIP3Q9BW71 556 aaPredicted RBP12.37□□□□□ -0.43
CD44-232ENST00000531118 CPDO75976 1380 aa12.36□□□□□ -0.43
CD44-232ENST00000531118 MAP3K5Q99683 1374 aa12.36□□□□□ -0.43
CD44-232ENST00000531118 C11orf95C9JLR9 678 aaPredicted RBP12.36□□□□□ -0.43
CD44-232ENST00000531118 PLSCR1O15162 318 aa12.36□□□□□ -0.43
CD44-232ENST00000531118 ZC3H6P61129 1189 aaKnown RBP12.36□□□□□ -0.43
CD44-232ENST00000531118 NGDNQ8NEJ9 315 aaKnown RBP12.36□□□□□ -0.43
CD44-232ENST00000531118 SYT17Q9BSW7 474 aa12.36□□□□□ -0.43
CD44-232ENST00000531118 POGKQ9P215 609 aa12.36□□□□□ -0.43
CD44-232ENST00000531118 MINK1Q8N4C8 1332 aaPredicted RBP12.36□□□□□ -0.43
CD44-232ENST00000531118 THRAP3Q9Y2W1 955 aaKnown RBP12.35□□□□□ -0.43
CD44-232ENST00000531118 CRB1P82279 1406 aa12.35□□□□□ -0.43
CD44-232ENST00000531118 NHSQ6T4R5 1651 aa12.35□□□□□ -0.43
CD44-232ENST00000531118 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
CD44-232ENST00000531118 SGIP1Q9BQI5 828 aa12.34□□□□□ -0.43
CD44-232ENST00000531118 BCL11BQ9C0K0 894 aaPredicted RBP12.34□□□□□ -0.43
CD44-232ENST00000531118 USP19O94966 1318 aa12.34□□□□□ -0.43
CD44-232ENST00000531118 COL24A1Q17RW2 1714 aa12.34□□□□□ -0.43
CD44-232ENST00000531118 EVA1CP58658 441 aa12.33□□□□□ -0.44
CD44-232ENST00000531118 QSER1Q2KHR3 1735 aa12.33□□□□□ -0.44
CD44-232ENST00000531118 BCL9O00512 1426 aa12.32□□□□□ -0.44
CD44-232ENST00000531118 WASLO00401 505 aaPredicted RBP12.32□□□□□ -0.44
CD44-232ENST00000531118 NUTM2GQ5VZR2 741 aa12.32□□□□□ -0.44
CD44-232ENST00000531118 MTFR1LQ9H019 292 aa12.32□□□□□ -0.44
CD44-232ENST00000531118 STK32BQ9NY57 414 aa12.32□□□□□ -0.44
CD44-232ENST00000531118 POLR3AO14802 1390 aaPredicted RBP12.31□□□□□ -0.44
CD44-232ENST00000531118 AATKQ6ZMQ8 1374 aa12.31□□□□□ -0.44
CD44-232ENST00000531118 COL18A1P39060 1754 aa12.31□□□□□ -0.44
CD44-232ENST00000531118 PTF1AQ7RTS3 328 aa12.31□□□□□ -0.44
CD44-232ENST00000531118 TUBGCP6Q96RT7 1819 aa12.31□□□□□ -0.44
CD44-232ENST00000531118 SLIT3O75094 1523 aa12.3□□□□□ -0.44
CD44-232ENST00000531118 SLC15A2Q16348 729 aa12.29□□□□□ -0.44
CD44-232ENST00000531118 TRAK1Q9UPV9 953 aa12.29□□□□□ -0.44
CD44-232ENST00000531118 BTAF1O14981 1849 aa12.28□□□□□ -0.44
CD44-232ENST00000531118 PLCD3Q8N3E9 789 aa12.28□□□□□ -0.44
CD44-232ENST00000531118 ARXQ96QS3 562 aa12.28□□□□□ -0.44
CD44-232ENST00000531118 RGPD5Q99666 1765 aa12.28□□□□□ -0.44
CD44-232ENST00000531118 DDB1Q16531 1140 aa12.27□□□□□ -0.45
CD44-232ENST00000531118 TXNRD1Q16881 649 aa12.27□□□□□ -0.45
CD44-232ENST00000531118 PPARGC1BQ86YN6 1023 aaKnown RBP12.27□□□□□ -0.45
CD44-232ENST00000531118 TRPM1Q7Z4N2 1603 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 GOLGB1Q14789 3259 aaKnown RBP12.26□□□□□ -0.45
CD44-232ENST00000531118 PIK3C2AO00443 1686 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 QRICH2Q9H0J4 1663 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 GPR162Q16538 588 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 MIER1Q8N108 512 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 NUDT16Q96DE0 195 aaKnown RBP12.26□□□□□ -0.45
CD44-232ENST00000531118 TNS2Q63HR2 1409 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 ABCC6O95255 1503 aa12.26□□□□□ -0.45
CD44-232ENST00000531118 ACEP12821 1306 aa12.24□□□□□ -0.45
CD44-232ENST00000531118 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
CD44-232ENST00000531118 MARCH10Q8NA82 808 aaPredicted RBP12.24□□□□□ -0.45
CD44-232ENST00000531118 ATP10DQ9P241 1426 aa12.24□□□□□ -0.45
CD44-232ENST00000531118 ABTB2Q8N961 1025 aa12.23□□□□□ -0.45
CD44-232ENST00000531118 MPHOSPH9Q99550 1183 aa12.23□□□□□ -0.45
CD44-232ENST00000531118 CPSF1Q10570 1443 aaKnown RBP12.22□□□□□ -0.45
CD44-232ENST00000531118 GCP02774 474 aa12.22□□□□□ -0.45
CD44-232ENST00000531118 ZBTB47Q9UFB7 747 aaPredicted RBP12.22□□□□□ -0.45
CD44-232ENST00000531118 WDR17Q8IZU2 1322 aa12.21□□□□□ -0.45
CD44-232ENST00000531118 ZBTB7CA1YPR0 619 aa12.21□□□□□ -0.45
CD44-232ENST00000531118 TOM1L2Q6ZVM7 507 aa12.21□□□□□ -0.45
CD44-232ENST00000531118 PELP1Q8IZL8 1130 aaKnown RBP12.21□□□□□ -0.45
CD44-232ENST00000531118 KLHL34Q8N239 644 aa12.21□□□□□ -0.45
CD44-232ENST00000531118 CREBZFQ9NS37 354 aa12.21□□□□□ -0.45
CD44-232ENST00000531118 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
CD44-232ENST00000531118 NLRP13Q86W25 1043 aa12.2□□□□□ -0.46
CD44-232ENST00000531118 CDCA7Q9BWT1 371 aaPredicted RBP12.2□□□□□ -0.46
CD44-232ENST00000531118 KAT6BQ8WYB5 2073 aa12.2□□□□□ -0.46
CD44-232ENST00000531118 ADCY9O60503 1353 aa12.19□□□□□ -0.46
CD44-232ENST00000531118 BRD4O60885 1362 aaPredicted RBP12.19□□□□□ -0.46
CD44-232ENST00000531118 PLEKHG3A1L390 1219 aa12.19□□□□□ -0.46
CD44-232ENST00000531118 PPIP5K1Q6PFW1 1433 aa12.19□□□□□ -0.46
CD44-232ENST00000531118 KIAA1210Q9ULL0 1709 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 HSPA6P17066 643 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 NLGN2Q8NFZ4 835 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 CDK19Q9BWU1 502 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 USP6P35125 1406 aa12.18□□□□□ -0.46
CD44-232ENST00000531118 CCDC61Q9Y6R9 512 aa12.17□□□□□ -0.46
CD44-232ENST00000531118 NFAT5O94916 1531 aa12.16□□□□□ -0.46
CD44-232ENST00000531118 POLD1P28340 1107 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms