RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 ITPKCQ96DU7 683 aa10.36□□□□□ -0.75
USP47-209ENST00000530041 C11orf95C9JLR9 678 aaPredicted RBP10.35□□□□□ -0.75
USP47-209ENST00000530041 GPR37L1O60883 481 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 FBXO45P0C2W1 286 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 BMP1P13497 986 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 NBPF20Q3BBV1 942 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 TRIM46Q7Z4K8 759 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 DZIP3Q86Y13 1208 aaKnown RBP10.35□□□□□ -0.75
USP47-209ENST00000530041 ZFAND3Q9H8U3 227 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 EMILIN1Q9Y6C2 1016 aa10.35□□□□□ -0.75
USP47-209ENST00000530041 KIFC2Q96AC6 838 aa10.34□□□□□ -0.75
USP47-209ENST00000530041 TRIM47Q96LD4 638 aa10.34□□□□□ -0.75
USP47-209ENST00000530041 PRM3Q9NNZ6 103 aa10.33□□□□□ -0.76
USP47-209ENST00000530041 DHX9Q08211 1270 aaKnown RBP10.32□□□□□ -0.76
USP47-209ENST00000530041 NR1H3Q13133 447 aa10.32□□□□□ -0.76
USP47-209ENST00000530041 TMEM132AQ24JP5 1023 aa10.32□□□□□ -0.76
USP47-209ENST00000530041 INTS6LQ5JSJ4 861 aaKnown RBP10.32□□□□□ -0.76
USP47-209ENST00000530041 PPP1R26Q5T8A7 1209 aaPredicted RBP10.32□□□□□ -0.76
USP47-209ENST00000530041 MRPL14Q6P1L8 145 aaKnown RBP10.31□□□□□ -0.76
USP47-209ENST00000530041 PGPEP1Q9NXJ5 209 aa10.31□□□□□ -0.76
USP47-209ENST00000530041 TBC1D2BQ9UPU7 963 aa10.31□□□□□ -0.76
USP47-209ENST00000530041 SNRPBP14678 240 aaKnown RBP10.3□□□□□ -0.76
USP47-209ENST00000530041 PCDHB9Q9Y5E1 797 aa10.3□□□□□ -0.76
USP47-209ENST00000530041 ESPNB1AK53 854 aa10.29□□□□□ -0.76
USP47-209ENST00000530041 MCM6Q14566 821 aa10.29□□□□□ -0.76
USP47-209ENST00000530041 ZFP42Q96MM3 310 aa10.29□□□□□ -0.76
USP47-209ENST00000530041 ZNF330Q9Y3S2 320 aaPredicted RBP10.29□□□□□ -0.76
USP47-209ENST00000530041 MCCD1P59942 119 aaPredicted RBP10.28□□□□□ -0.76
USP47-209ENST00000530041 SCARF1Q14162 830 aa10.28□□□□□ -0.76
USP47-209ENST00000530041 SEPT12Q8IYM1 358 aa10.28□□□□□ -0.76
USP47-209ENST00000530041 MEIOBQ8N635 442 aa10.28□□□□□ -0.76
USP47-209ENST00000530041 ZNF592Q92610 1267 aa10.28□□□□□ -0.76
USP47-209ENST00000530041 ZNF775Q96BV0 537 aaPredicted RBP10.28□□□□□ -0.76
USP47-209ENST00000530041 PURBQ96QR8 312 aaKnown RBP10.27□□□□□ -0.77
USP47-209ENST00000530041 ERVH48-1M5A8F1 160 aa10.25□□□□□ -0.77
USP47-209ENST00000530041 UPP2O95045 317 aa10.25□□□□□ -0.77
USP47-209ENST00000530041 RAB15P59190 212 aa10.25□□□□□ -0.77
USP47-209ENST00000530041 Q6ZVU0 165 aa10.25□□□□□ -0.77
USP47-209ENST00000530041 LINC00528Q8N1L1 170 aa10.25□□□□□ -0.77
USP47-209ENST00000530041 GIGYF1O75420 1035 aaPredicted RBP10.24□□□□□ -0.77
USP47-209ENST00000530041 CBLBQ13191 982 aa10.24□□□□□ -0.77
USP47-209ENST00000530041 IRF5Q13568 498 aa10.24□□□□□ -0.77
USP47-209ENST00000530041 TSEN34Q9BSV6 310 aaKnown RBP10.24□□□□□ -0.77
USP47-209ENST00000530041 GDPD2Q9HCC8 539 aa10.24□□□□□ -0.77
USP47-209ENST00000530041 TMPRSS4Q9NRS4 437 aa10.24□□□□□ -0.77
USP47-209ENST00000530041 C6orf118Q5T5N4 469 aa10.23□□□□□ -0.77
USP47-209ENST00000530041 BMP2P12643 396 aa10.22□□□□□ -0.77
USP47-209ENST00000530041 CCDC125Q86Z20 511 aa10.22□□□□□ -0.77
USP47-209ENST00000530041 ZNF784Q8NCA9 323 aaPredicted RBP10.22□□□□□ -0.77
USP47-209ENST00000530041 TRIM52Q96A61 297 aa10.22□□□□□ -0.77
USP47-209ENST00000530041 ABL2P42684 1182 aa10.21□□□□□ -0.77
USP47-209ENST00000530041 RNF20Q5VTR2 975 aa10.21□□□□□ -0.77
USP47-209ENST00000530041 FLIIQ13045 1269 aa10.2□□□□□ -0.78
USP47-209ENST00000530041 LILRA1O75019 489 aa10.19□□□□□ -0.78
USP47-209ENST00000530041 EIF4G2P78344 907 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP47-209ENST00000530041 COG6Q9Y2V7 657 aa10.19□□□□□ -0.78
USP47-209ENST00000530041 WASHC4Q2M389 1173 aa10.18□□□□□ -0.78
USP47-209ENST00000530041 SOS2Q07890 1332 aaPredicted RBP10.17□□□□□ -0.78
USP47-209ENST00000530041 ADD1P35611 737 aaKnown RBP10.17□□□□□ -0.78
USP47-209ENST00000530041 VAC14Q08AM6 782 aa10.17□□□□□ -0.78
USP47-209ENST00000530041 CEP126Q9P2H0 1117 aa10.17□□□□□ -0.78
USP47-209ENST00000530041 SPINT1O43278 529 aa10.16□□□□□ -0.78
USP47-209ENST00000530041 AGBL1Q96MI9 1066 aa10.16□□□□□ -0.78
USP47-209ENST00000530041 CYLDQ9NQC7 956 aa10.16□□□□□ -0.78
USP47-209ENST00000530041 ADH1AP07327 375 aa10.15□□□□□ -0.78
USP47-209ENST00000530041 TERTO14746 1132 aaKnown RBP10.14□□□□□ -0.79
USP47-209ENST00000530041 MAN1A2O60476 641 aa10.14□□□□□ -0.79
USP47-209ENST00000530041 RELBQ01201 579 aa10.14□□□□□ -0.79
USP47-209ENST00000530041 TREML4Q6UXN2 200 aa10.14□□□□□ -0.79
USP47-209ENST00000530041 POM121Q96HA1 1249 aa10.14□□□□□ -0.79
USP47-209ENST00000530041 TTLL8A6PVC2 850 aa10.13□□□□□ -0.79
USP47-209ENST00000530041 SOBPA7XYQ1 873 aa10.13□□□□□ -0.79
USP47-209ENST00000530041 UBTFP17480 764 aaKnown RBP10.13□□□□□ -0.79
USP47-209ENST00000530041 ERVK-9P63128 1117 aa10.13□□□□□ -0.79
USP47-209ENST00000530041 CC2D2BQ6DHV5 1058 aa10.13□□□□□ -0.79
USP47-209ENST00000530041 NXF1Q9UBU9 619 aaKnown RBP10.13□□□□□ -0.79
USP47-209ENST00000530041 PCDHB11Q9Y5F2 797 aa10.13□□□□□ -0.79
USP47-209ENST00000530041 RAD21O60216 631 aa10.12□□□□□ -0.79
USP47-209ENST00000530041 NFX1Q12986 1120 aaKnown RBP10.12□□□□□ -0.79
USP47-209ENST00000530041 KDF1Q8NAX2 398 aaPredicted RBP10.12□□□□□ -0.79
USP47-209ENST00000530041 DNMT3LQ9UJW3 386 aa10.12□□□□□ -0.79
USP47-209ENST00000530041 WFS1O76024 890 aa10.11□□□□□ -0.79
USP47-209ENST00000530041 SOX11P35716 441 aa10.11□□□□□ -0.79
USP47-209ENST00000530041 PTGIRP43119 386 aa10.11□□□□□ -0.79
USP47-209ENST00000530041 LCE2AQ5TA79 106 aaPredicted RBP10.11□□□□□ -0.79
USP47-209ENST00000530041 WWC1Q8IX03 1113 aa10.11□□□□□ -0.79
USP47-209ENST00000530041 ZNF395Q9H8N7 513 aaPredicted RBP10.11□□□□□ -0.79
USP47-209ENST00000530041 NPAS3Q8IXF0 933 aa10.1□□□□□ -0.79
USP47-209ENST00000530041 PHTF2Q8N3S3 785 aa10.1□□□□□ -0.79
USP47-209ENST00000530041 INSM2Q96T92 566 aaPredicted RBP10.1□□□□□ -0.79
USP47-209ENST00000530041 ATP5J2-PTCD1G3V325 749 aa10.09□□□□□ -0.79
USP47-209ENST00000530041 CTSOP43234 321 aaPredicted RBP10.09□□□□□ -0.79
USP47-209ENST00000530041 SCTRP47872 440 aa10.09□□□□□ -0.79
USP47-209ENST00000530041 SEMA3FQ13275 785 aa10.09□□□□□ -0.79
USP47-209ENST00000530041 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.09□□□□□ -0.79
USP47-209ENST00000530041 SLFNL1Q499Z3 407 aa10.09□□□□□ -0.79
USP47-209ENST00000530041 CCDC85AQ96PX6 553 aaPredicted RBP10.09□□□□□ -0.79
USP47-209ENST00000530041 POLMQ9NP87 494 aaPredicted RBP10.08□□□□□ -0.8
USP47-209ENST00000530041 FIGNL2A6NMB9 653 aa10.07□□□□□ -0.8
USP47-209ENST00000530041 CYP2U1Q7Z449 544 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms