RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 AEBP2Q6ZN18 517 aaPredicted RBP28.38■■■□□ 2.13
USP47-209ENST00000530041 CHIC1Q5VXU3 224 aa27.5■■□□□ 1.99
USP47-209ENST00000530041 PHF23Q9BUL5 403 aaPredicted RBP24.15■■□□□ 1.46
USP47-209ENST00000530041 SENP3Q9H4L4 574 aaPredicted RBP24.15■■□□□ 1.46
USP47-209ENST00000530041 FOXD1Q16676 465 aa22.42■■□□□ 1.18
USP47-209ENST00000530041 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
USP47-209ENST00000530041 PPP6R1Q9UPN7 881 aa21.38■■□□□ 1.01
USP47-209ENST00000530041 ADRA2BP18089 450 aa21.34■■□□□ 1.01
USP47-209ENST00000530041 PIAS4Q8N2W9 510 aaPredicted RBP21.09■□□□□ 0.97
USP47-209ENST00000530041 MSH5O43196 834 aa20.8■□□□□ 0.92
USP47-209ENST00000530041 SCAF1Q9H7N4 1312 aaKnown RBP19.57■□□□□ 0.72
USP47-209ENST00000530041 PPP4R3CPQ6ZMV5 832 aa19.54■□□□□ 0.72
USP47-209ENST00000530041 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
USP47-209ENST00000530041 POTEDQ86YR6 584 aa19.34■□□□□ 0.69
USP47-209ENST00000530041 DMRT2Q9Y5R5 561 aa19.24■□□□□ 0.67
USP47-209ENST00000530041 CNKSR2Q8WXI2 1034 aa19.07■□□□□ 0.64
USP47-209ENST00000530041 NCBP3Q53F19 620 aaKnown RBP18.98■□□□□ 0.63
USP47-209ENST00000530041 KCNA4P22459 653 aa18.81■□□□□ 0.6
USP47-209ENST00000530041 RNF216Q9NWF9 866 aaPredicted RBP18.76■□□□□ 0.59
USP47-209ENST00000530041 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
USP47-209ENST00000530041 NPM3O75607 178 aaKnown RBP18.69■□□□□ 0.58
USP47-209ENST00000530041 DCAF8L1A6NGE4 600 aa18.39■□□□□ 0.53
USP47-209ENST00000530041 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
USP47-209ENST00000530041 SLC4A1APQ9BWU0 796 aaKnown RBP17.87■□□□□ 0.45
USP47-209ENST00000530041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.85■□□□□ 0.45
USP47-209ENST00000530041 RNF39Q9H2S5 420 aa17.79■□□□□ 0.44
USP47-209ENST00000530041 SLC4A2P04920 1241 aa17.7■□□□□ 0.42
USP47-209ENST00000530041 C1QBPQ07021 282 aaKnown RBP17.57■□□□□ 0.4
USP47-209ENST00000530041 U3KPZ7 1027 aaPredicted RBP17.54■□□□□ 0.4
USP47-209ENST00000530041 CACNB1Q02641 598 aaPredicted RBP17.49■□□□□ 0.39
USP47-209ENST00000530041 FOXD4L1Q9NU39 408 aa17.4■□□□□ 0.38
USP47-209ENST00000530041 ZBTB22O15209 634 aa17.29■□□□□ 0.36
USP47-209ENST00000530041 MYCNP04198 464 aaPredicted RBP17.28■□□□□ 0.36
USP47-209ENST00000530041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.26■□□□□ 0.35
USP47-209ENST00000530041 HNRNPUL2Q1KMD3 747 aaKnown RBP17.26■□□□□ 0.35
USP47-209ENST00000530041 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
USP47-209ENST00000530041 APLP2Q06481 763 aa17.14■□□□□ 0.33
USP47-209ENST00000530041 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
USP47-209ENST00000530041 CAPN15O75808 1086 aa17.06■□□□□ 0.32
USP47-209ENST00000530041 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
USP47-209ENST00000530041 CSRNP3Q8WYN3 585 aa17■□□□□ 0.31
USP47-209ENST00000530041 ZNF219Q9P2Y4 722 aaPredicted RBP16.93■□□□□ 0.3
USP47-209ENST00000530041 TRHP20396 242 aaPredicted RBP16.91■□□□□ 0.3
USP47-209ENST00000530041 ATXN8OSP0DMR3 200 aa16.84■□□□□ 0.29
USP47-209ENST00000530041 DSG3P32926 999 aa16.84■□□□□ 0.29
USP47-209ENST00000530041 ATF5Q9Y2D1 282 aaPredicted RBP16.82■□□□□ 0.28
USP47-209ENST00000530041 ABCB7O75027 752 aa16.69■□□□□ 0.26
USP47-209ENST00000530041 POLA2Q14181 598 aa16.6■□□□□ 0.25
USP47-209ENST00000530041 ZBTB12Q9Y330 459 aaPredicted RBP16.33■□□□□ 0.2
USP47-209ENST00000530041 FBLN2P98095 1184 aa16.15■□□□□ 0.18
USP47-209ENST00000530041 MKRN4PQ13434 485 aaPredicted RBP16.08■□□□□ 0.16
USP47-209ENST00000530041 RBM42Q9BTD8 480 aaKnown RBP16.07■□□□□ 0.16
USP47-209ENST00000530041 OSCARQ8IYS5 282 aa16.03■□□□□ 0.16
USP47-209ENST00000530041 SPDYE2BA6NHP3 402 aa15.86■□□□□ 0.13
USP47-209ENST00000530041 SPDYE6P0CI01 402 aa15.86■□□□□ 0.13
USP47-209ENST00000530041 SPDYE2Q495Y8 402 aa15.86■□□□□ 0.13
USP47-209ENST00000530041 AKT1S1Q96B36 256 aa15.82■□□□□ 0.12
USP47-209ENST00000530041 ZNF692Q9BU19 519 aaPredicted RBP15.75■□□□□ 0.11
USP47-209ENST00000530041 SSUH2Q9Y2M2 353 aa15.7■□□□□ 0.1
USP47-209ENST00000530041 REM2Q8IYK8 340 aaPredicted RBP15.65■□□□□ 0.1
USP47-209ENST00000530041 SPDYE4A6NLX3 237 aa15.61■□□□□ 0.09
USP47-209ENST00000530041 PABPN1Q86U42 306 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP47-209ENST00000530041 CHRDL2Q6WN34 429 aa15.48■□□□□ 0.07
USP47-209ENST00000530041 PITPNM1O00562 1244 aa15.47■□□□□ 0.07
USP47-209ENST00000530041 SPDYE1Q8NFV5 336 aaPredicted RBP15.44■□□□□ 0.06
USP47-209ENST00000530041 FKBP8Q14318 412 aa15.38■□□□□ 0.05
USP47-209ENST00000530041 CLEC11AQ9Y240 323 aa15.37■□□□□ 0.05
USP47-209ENST00000530041 PROM2Q8N271 834 aa15.34■□□□□ 0.05
USP47-209ENST00000530041 POTEHQ6S545 545 aa15.28■□□□□ 0.04
USP47-209ENST00000530041 FXR2P51116 673 aaKnown RBP eCLIP15.25■□□□□ 0.03
USP47-209ENST00000530041 STAG3Q9UJ98 1225 aa15.24■□□□□ 0.03
USP47-209ENST00000530041 PIP4P2Q8N4L2 257 aa15.23■□□□□ 0.03
USP47-209ENST00000530041 PRR29P0C7W0 189 aa15.21■□□□□ 0.03
USP47-209ENST00000530041 PRKAR2AP13861 404 aaKnown RBP15.08■□□□□ 0
USP47-209ENST00000530041 CHADLQ6NUI6 762 aa15.01□□□□□ -0.01
USP47-209ENST00000530041 CREBZFQ9NS37 354 aa14.96□□□□□ -0.01
USP47-209ENST00000530041 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
USP47-209ENST00000530041 FARP1Q9Y4F1 1045 aaPredicted RBP14.87□□□□□ -0.03
USP47-209ENST00000530041 MIER1Q8N108 512 aa14.83□□□□□ -0.04
USP47-209ENST00000530041 HAX1O00165 279 aa14.8□□□□□ -0.04
USP47-209ENST00000530041 PLEKHG5O94827 1062 aa14.79□□□□□ -0.04
USP47-209ENST00000530041 MNX1P50219 401 aaPredicted RBP14.78□□□□□ -0.04
USP47-209ENST00000530041 PLCD3Q8N3E9 789 aa14.77□□□□□ -0.05
USP47-209ENST00000530041 C19orf67A6NJJ6 358 aa14.73□□□□□ -0.05
USP47-209ENST00000530041 NPM1P06748 294 aaKnown RBP eCLIP14.72□□□□□ -0.05
USP47-209ENST00000530041 VASPP50552 380 aaPredicted RBP14.71□□□□□ -0.05
USP47-209ENST00000530041 ZBTB47Q9UFB7 747 aaPredicted RBP14.66□□□□□ -0.06
USP47-209ENST00000530041 EVX2Q03828 476 aa14.65□□□□□ -0.06
USP47-209ENST00000530041 CD44P16070 742 aaKnown RBP14.63□□□□□ -0.07
USP47-209ENST00000530041 SP7Q8TDD2 431 aaPredicted RBP14.58□□□□□ -0.08
USP47-209ENST00000530041 PAK3O75914 559 aaPredicted RBP14.52□□□□□ -0.09
USP47-209ENST00000530041 KLHL34Q8N239 644 aa14.51□□□□□ -0.09
USP47-209ENST00000530041 ZRANB1Q9UGI0 708 aa14.51□□□□□ -0.09
USP47-209ENST00000530041 IFNLR1Q8IU57 520 aaPredicted RBP14.49□□□□□ -0.09
USP47-209ENST00000530041 NUBP1P53384 320 aa14.48□□□□□ -0.09
USP47-209ENST00000530041 RASEFQ8IZ41 740 aa14.46□□□□□ -0.09
USP47-209ENST00000530041 ZNF579Q8NAF0 562 aaKnown RBP14.45□□□□□ -0.1
USP47-209ENST00000530041 TSPYL2Q9H2G4 693 aaPredicted RBP14.44□□□□□ -0.1
USP47-209ENST00000530041 CLCN6P51797 869 aa14.38□□□□□ -0.11
USP47-209ENST00000530041 GABBR2O75899 941 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms