RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.42□□□□□ -0.26
CHD7-208ENST00000528280 CAMKK2Q96RR4 588 aa13.42□□□□□ -0.26
CHD7-208ENST00000528280 USP35Q9P2H5 1018 aa13.42□□□□□ -0.26
CHD7-208ENST00000528280 USP31Q70CQ4 1352 aa13.42□□□□□ -0.26
CHD7-208ENST00000528280 NRAPQ86VF7 1730 aa13.42□□□□□ -0.26
CHD7-208ENST00000528280 RREB1Q92766 1687 aa13.41□□□□□ -0.26
CHD7-208ENST00000528280 FAM196AQ6ZSG2 479 aa13.41□□□□□ -0.26
CHD7-208ENST00000528280 CDCA7Q9BWT1 371 aaPredicted RBP13.41□□□□□ -0.26
CHD7-208ENST00000528280 EDC4Q6P2E9 1401 aaKnown RBP13.4□□□□□ -0.26
CHD7-208ENST00000528280 ZNF784Q8NCA9 323 aaPredicted RBP13.4□□□□□ -0.26
CHD7-208ENST00000528280 USP47Q96K76 1375 aa13.4□□□□□ -0.26
CHD7-208ENST00000528280 NRKQ7Z2Y5 1582 aa13.4□□□□□ -0.26
CHD7-208ENST00000528280 SLIT3O75094 1523 aa13.39□□□□□ -0.27
CHD7-208ENST00000528280 NUP188Q5SRE5 1749 aa13.39□□□□□ -0.27
CHD7-208ENST00000528280 FAM182BQ5T319 152 aa13.39□□□□□ -0.27
CHD7-208ENST00000528280 TOM1L2Q6ZVM7 507 aa13.39□□□□□ -0.27
CHD7-208ENST00000528280 AKAP12Q02952 1782 aa13.39□□□□□ -0.27
CHD7-208ENST00000528280 CRB1P82279 1406 aa13.38□□□□□ -0.27
CHD7-208ENST00000528280 WDR17Q8IZU2 1322 aa13.38□□□□□ -0.27
CHD7-208ENST00000528280 PARD3Q8TEW0 1356 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 SOX12O15370 315 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 CSB-PGBD3P0DP91 1061 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 C1QTNF8P60827 252 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 NME9Q86XW9 330 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 COG3Q96JB2 828 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 CARD10Q9BWT7 1032 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 PPP1R1BQ9UD71 204 aaPredicted RBP13.37□□□□□ -0.27
CHD7-208ENST00000528280 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 THSD7AQ9UPZ6 1657 aa13.37□□□□□ -0.27
CHD7-208ENST00000528280 COL5A2P05997 1499 aaPredicted RBP13.36□□□□□ -0.27
CHD7-208ENST00000528280 SPON1Q9HCB6 807 aa13.36□□□□□ -0.27
CHD7-208ENST00000528280 PIK3C2AO00443 1686 aa13.36□□□□□ -0.27
CHD7-208ENST00000528280 CD163L1Q9NR16 1453 aa13.36□□□□□ -0.27
CHD7-208ENST00000528280 A0A1W2PP64 1363 aa13.35□□□□□ -0.27
CHD7-208ENST00000528280 LMO7Q8WWI1 1683 aa13.35□□□□□ -0.27
CHD7-208ENST00000528280 KCNQ2O43526 872 aa13.35□□□□□ -0.27
CHD7-208ENST00000528280 ANKRD36BQ8N2N9 1353 aa13.34□□□□□ -0.27
CHD7-208ENST00000528280 MON2Q7Z3U7 1717 aa13.34□□□□□ -0.27
CHD7-208ENST00000528280 EIF4G2P78344 907 aaKnown RBP eCLIP13.34□□□□□ -0.27
CHD7-208ENST00000528280 DDB1Q16531 1140 aa13.34□□□□□ -0.27
CHD7-208ENST00000528280 EXOC5O00471 708 aa13.33□□□□□ -0.28
CHD7-208ENST00000528280 TRIM37O94972 964 aa13.33□□□□□ -0.28
CHD7-208ENST00000528280 NBPF14Q5TI25 921 aa13.33□□□□□ -0.28
CHD7-208ENST00000528280 CCDC7Q96M83 1385 aa13.32□□□□□ -0.28
CHD7-208ENST00000528280 APBA3O96018 575 aa13.32□□□□□ -0.28
CHD7-208ENST00000528280 IP6K1Q92551 441 aa13.32□□□□□ -0.28
CHD7-208ENST00000528280 ABCC6O95255 1503 aa13.32□□□□□ -0.28
CHD7-208ENST00000528280 COL18A1P39060 1754 aa13.3□□□□□ -0.28
CHD7-208ENST00000528280 FYB1O15117 783 aa13.3□□□□□ -0.28
CHD7-208ENST00000528280 NLRP2Q9NX02 1062 aa13.3□□□□□ -0.28
CHD7-208ENST00000528280 NFAT5O94916 1531 aa13.29□□□□□ -0.28
CHD7-208ENST00000528280 AMPHP49418 695 aa13.29□□□□□ -0.28
CHD7-208ENST00000528280 ANKRD24Q8TF21 1146 aa13.29□□□□□ -0.28
CHD7-208ENST00000528280 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
CHD7-208ENST00000528280 ERBB3P21860 1342 aa13.28□□□□□ -0.28
CHD7-208ENST00000528280 UTRNP46939 3433 aa13.28□□□□□ -0.28
CHD7-208ENST00000528280 OVOS2A0A0J9YW53 1432 aa13.28□□□□□ -0.28
CHD7-208ENST00000528280 OVOS2Q6IE36 1432 aa13.28□□□□□ -0.28
CHD7-208ENST00000528280 CASZ1Q86V15 1759 aa13.27□□□□□ -0.28
CHD7-208ENST00000528280 CEP350Q5VT06 3117 aa13.27□□□□□ -0.28
CHD7-208ENST00000528280 IL2RBP14784 551 aa13.27□□□□□ -0.29
CHD7-208ENST00000528280 OVOS2A0A0G2JMS6 1433 aa13.26□□□□□ -0.29
CHD7-208ENST00000528280 BCL11BQ9C0K0 894 aaPredicted RBP13.26□□□□□ -0.29
CHD7-208ENST00000528280 GGNBP2Q9H3C7 697 aa13.26□□□□□ -0.29
CHD7-208ENST00000528280 PARP4Q9UKK3 1724 aaKnown RBP13.25□□□□□ -0.29
CHD7-208ENST00000528280 MAP3K19Q56UN5 1328 aa13.25□□□□□ -0.29
CHD7-208ENST00000528280 PLSCR1O15162 318 aa13.25□□□□□ -0.29
CHD7-208ENST00000528280 HSPA5P11021 654 aaKnown RBP13.25□□□□□ -0.29
CHD7-208ENST00000528280 HOXC9P31274 260 aa13.25□□□□□ -0.29
CHD7-208ENST00000528280 CARD14Q9BXL6 1004 aa13.25□□□□□ -0.29
CHD7-208ENST00000528280 MYOM1P52179 1685 aa13.24□□□□□ -0.29
CHD7-208ENST00000528280 BCL9O00512 1426 aa13.24□□□□□ -0.29
CHD7-208ENST00000528280 CGNL1Q0VF96 1302 aa13.24□□□□□ -0.29
CHD7-208ENST00000528280 MARCH10Q8NA82 808 aaPredicted RBP13.24□□□□□ -0.29
CHD7-208ENST00000528280 POLR3GLQ9BT43 218 aa13.24□□□□□ -0.29
CHD7-208ENST00000528280 KIF24Q5T7B8 1368 aa13.23□□□□□ -0.29
CHD7-208ENST00000528280 RGPD5Q99666 1765 aa13.23□□□□□ -0.29
CHD7-208ENST00000528280 LTV1Q96GA3 475 aaPredicted RBP13.23□□□□□ -0.29
CHD7-208ENST00000528280 RGPD3A6NKT7 1758 aaPredicted RBP13.22□□□□□ -0.29
CHD7-208ENST00000528280 RGPD4Q7Z3J3 1758 aa13.22□□□□□ -0.29
CHD7-208ENST00000528280 RTL1A6NKG5 1358 aa13.22□□□□□ -0.29
CHD7-208ENST00000528280 SBF2Q86WG5 1849 aa13.21□□□□□ -0.29
CHD7-208ENST00000528280 LTN1O94822 1766 aa13.21□□□□□ -0.29
CHD7-208ENST00000528280 RRS1Q15050 365 aaKnown RBP13.2□□□□□ -0.3
CHD7-208ENST00000528280 SMG6Q86US8 1419 aaKnown RBP13.2□□□□□ -0.3
CHD7-208ENST00000528280 FBLN1P23142 703 aa13.19□□□□□ -0.3
CHD7-208ENST00000528280 PANK3Q9H999 370 aa13.19□□□□□ -0.3
CHD7-208ENST00000528280 NSD3Q9BZ95 1437 aa13.19□□□□□ -0.3
CHD7-208ENST00000528280 INSRP06213 1382 aa13.19□□□□□ -0.3
CHD7-208ENST00000528280 PTGER2P43116 358 aa13.18□□□□□ -0.3
CHD7-208ENST00000528280 ZCRB1Q8TBF4 217 aaKnown RBP13.18□□□□□ -0.3
CHD7-208ENST00000528280 RAPGEF4Q8WZA2 1011 aa13.18□□□□□ -0.3
CHD7-208ENST00000528280 SYT17Q9BSW7 474 aa13.18□□□□□ -0.3
CHD7-208ENST00000528280 FLT4P35916 1363 aa13.18□□□□□ -0.3
CHD7-208ENST00000528280 TNS2Q63HR2 1409 aa13.17□□□□□ -0.3
CHD7-208ENST00000528280 GIGYF1O75420 1035 aaPredicted RBP13.17□□□□□ -0.3
CHD7-208ENST00000528280 HSP90AB2PQ58FF8 381 aa13.17□□□□□ -0.3
CHD7-208ENST00000528280 DDX54Q8TDD1 881 aaKnown RBP13.17□□□□□ -0.3
CHD7-208ENST00000528280 LRRC37A3O60309 1634 aa13.17□□□□□ -0.3
CHD7-208ENST00000528280 TATP17735 454 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms