RNA–Protein interactions for RNA: ENST00000527551.1

USH1C-206, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 371 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-206ENST00000527551 RTL1A6NKG5 1358 aa17.49■□□□□ 0.39
USH1C-206ENST00000527551 COL5A2P05997 1499 aaPredicted RBP17.49■□□□□ 0.39
USH1C-206ENST00000527551 MAP2P11137 1827 aaKnown RBP17.49■□□□□ 0.39
USH1C-206ENST00000527551 BLMP54132 1417 aaPredicted RBP17.48■□□□□ 0.39
USH1C-206ENST00000527551 RXRBP28702 533 aa17.48■□□□□ 0.39
USH1C-206ENST00000527551 AMER1Q5JTC6 1135 aaPredicted RBP17.48■□□□□ 0.39
USH1C-206ENST00000527551 FAM208AQ9UK61 1670 aaKnown RBP17.48■□□□□ 0.39
USH1C-206ENST00000527551 GJD4Q96KN9 370 aaPredicted RBP17.47■□□□□ 0.39
USH1C-206ENST00000527551 EVA1CP58658 441 aa17.46■□□□□ 0.39
USH1C-206ENST00000527551 MAP3K19Q56UN5 1328 aa17.46■□□□□ 0.38
USH1C-206ENST00000527551 GLI3P10071 1580 aa17.45■□□□□ 0.38
USH1C-206ENST00000527551 ZBTB7CA1YPR0 619 aa17.45■□□□□ 0.38
USH1C-206ENST00000527551 IP6K1Q92551 441 aa17.45■□□□□ 0.38
USH1C-206ENST00000527551 MORC1Q86VD1 984 aa17.44■□□□□ 0.38
USH1C-206ENST00000527551 CRB1P82279 1406 aa17.44■□□□□ 0.38
USH1C-206ENST00000527551 SPATA31A5Q5VU36 1347 aa17.44■□□□□ 0.38
USH1C-206ENST00000527551 SPATA31A7Q8IWB4 1347 aa17.44■□□□□ 0.38
USH1C-206ENST00000527551 WDR17Q8IZU2 1322 aa17.44■□□□□ 0.38
USH1C-206ENST00000527551 AMPHP49418 695 aa17.43■□□□□ 0.38
USH1C-206ENST00000527551 STRN4Q9NRL3 753 aa17.43■□□□□ 0.38
USH1C-206ENST00000527551 AXIN2Q9Y2T1 843 aa17.43■□□□□ 0.38
USH1C-206ENST00000527551 FLT4P35916 1363 aa17.42■□□□□ 0.38
USH1C-206ENST00000527551 CCDC9Q9Y3X0 531 aaKnown RBP17.42■□□□□ 0.38
USH1C-206ENST00000527551 PEAK1Q9H792 1746 aa17.41■□□□□ 0.38
USH1C-206ENST00000527551 HOXC9P31274 260 aa17.41■□□□□ 0.38
USH1C-206ENST00000527551 THRAP3Q9Y2W1 955 aaKnown RBP17.41■□□□□ 0.38
USH1C-206ENST00000527551 ERBB3P21860 1342 aa17.41■□□□□ 0.38
USH1C-206ENST00000527551 SPATA31A1Q5TZJ5 1347 aa17.41■□□□□ 0.38
USH1C-206ENST00000527551 SMG6Q86US8 1419 aaKnown RBP17.4■□□□□ 0.38
USH1C-206ENST00000527551 ZNF316A6NFI3 1004 aaPredicted RBP17.4■□□□□ 0.38
USH1C-206ENST00000527551 ONECUT3O60422 494 aaPredicted RBP17.4■□□□□ 0.38
USH1C-206ENST00000527551 INSRP06213 1382 aa17.4■□□□□ 0.38
USH1C-206ENST00000527551 RRS1Q15050 365 aaKnown RBP17.39■□□□□ 0.37
USH1C-206ENST00000527551 LARP1Q6PKG0 1096 aaKnown RBP17.39■□□□□ 0.37
USH1C-206ENST00000527551 WNK3Q9BYP7 1800 aa17.39■□□□□ 0.37
USH1C-206ENST00000527551 FBLN1P23142 703 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 BARGINQ6ZT62 677 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 TOM1L2Q6ZVM7 507 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 CARD10Q9BWT7 1032 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 POLKQ9UBT6 870 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 THSD7AQ9UPZ6 1657 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 RGS12O14924 1447 aa17.38■□□□□ 0.37
USH1C-206ENST00000527551 CSB-PGBD3P0DP91 1061 aa17.37■□□□□ 0.37
USH1C-206ENST00000527551 TCP11L2Q8N4U5 519 aa17.37■□□□□ 0.37
USH1C-206ENST00000527551 ANKRD24Q8TF21 1146 aa17.37■□□□□ 0.37
USH1C-206ENST00000527551 DDX10Q13206 875 aaKnown RBP17.36■□□□□ 0.37
USH1C-206ENST00000527551 CC2D1BQ5T0F9 858 aaKnown RBP17.36■□□□□ 0.37
USH1C-206ENST00000527551 EMILIN1Q9Y6C2 1016 aa17.36■□□□□ 0.37
USH1C-206ENST00000527551 PARP4Q9UKK3 1724 aaKnown RBP17.35■□□□□ 0.37
USH1C-206ENST00000527551 TNNT2P45379 298 aaPredicted RBP17.35■□□□□ 0.37
USH1C-206ENST00000527551 ILDR2Q71H61 639 aa17.35■□□□□ 0.37
USH1C-206ENST00000527551 CDCA7Q9BWT1 371 aaPredicted RBP17.35■□□□□ 0.37
USH1C-206ENST00000527551 BRWD3Q6RI45 1802 aa17.34■□□□□ 0.37
USH1C-206ENST00000527551 PPM1GO15355 546 aaPredicted RBP17.33■□□□□ 0.36
USH1C-206ENST00000527551 FAM98CQ17RN3 349 aaKnown RBP17.33■□□□□ 0.36
USH1C-206ENST00000527551 HSP90AB2PQ58FF8 381 aa17.33■□□□□ 0.36
USH1C-206ENST00000527551 RGPD2P0DJD1 1756 aa17.33■□□□□ 0.36
USH1C-206ENST00000527551 NLRP2Q9NX02 1062 aa17.32■□□□□ 0.36
USH1C-206ENST00000527551 USP35Q9P2H5 1018 aa17.32■□□□□ 0.36
USH1C-206ENST00000527551 SEPT12Q8IYM1 358 aa17.31■□□□□ 0.36
USH1C-206ENST00000527551 PARD3Q8TEW0 1356 aa17.3■□□□□ 0.36
USH1C-206ENST00000527551 DISP2A7MBM2 1401 aa17.3■□□□□ 0.36
USH1C-206ENST00000527551 LTV1Q96GA3 475 aaPredicted RBP17.29■□□□□ 0.36
USH1C-206ENST00000527551 NCAPD2Q15021 1401 aa17.29■□□□□ 0.36
USH1C-206ENST00000527551 LRRC37A3O60309 1634 aa17.29■□□□□ 0.36
USH1C-206ENST00000527551 A0A0G2JS52 829 aa17.28■□□□□ 0.36
USH1C-206ENST00000527551 MTHFSP49914 203 aa17.28■□□□□ 0.36
USH1C-206ENST00000527551 MYT1Q01538 1121 aa17.28■□□□□ 0.36
USH1C-206ENST00000527551 RALBP1Q15311 655 aa17.28■□□□□ 0.36
USH1C-206ENST00000527551 PLEKHG2Q9H7P9 1386 aa17.27■□□□□ 0.35
USH1C-206ENST00000527551 IL2RBP14784 551 aa17.26■□□□□ 0.35
USH1C-206ENST00000527551 NBPF6Q5VWK0 638 aa17.26■□□□□ 0.35
USH1C-206ENST00000527551 KRT27Q7Z3Y8 459 aa17.26■□□□□ 0.35
USH1C-206ENST00000527551 NBPF4Q96M43 638 aa17.26■□□□□ 0.35
USH1C-206ENST00000527551 RGPD1P0DJD0 1748 aa17.26■□□□□ 0.35
USH1C-206ENST00000527551 PPP2R1AP30153 589 aa17.25■□□□□ 0.35
USH1C-206ENST00000527551 EIF4A2Q14240 407 aaKnown RBP17.25■□□□□ 0.35
USH1C-206ENST00000527551 CNGB1Q14028 1251 aaPredicted RBP17.24■□□□□ 0.35
USH1C-206ENST00000527551 DDB1Q16531 1140 aa17.24■□□□□ 0.35
USH1C-206ENST00000527551 CFAP53Q96M91 514 aa17.24■□□□□ 0.35
USH1C-206ENST00000527551 IGSF1Q8N6C5 1336 aa17.23■□□□□ 0.35
USH1C-206ENST00000527551 TNS2Q63HR2 1409 aa17.23■□□□□ 0.35
USH1C-206ENST00000527551 PDE3BQ13370 1112 aa17.23■□□□□ 0.35
USH1C-206ENST00000527551 COL3A1P02461 1466 aaPredicted RBP17.23■□□□□ 0.35
USH1C-206ENST00000527551 EXOC5O00471 708 aa17.22■□□□□ 0.35
USH1C-206ENST00000527551 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
USH1C-206ENST00000527551 EYA1Q99502 592 aa17.22■□□□□ 0.35
USH1C-206ENST00000527551 OVOS2A0A0G2JMS6 1433 aa17.21■□□□□ 0.35
USH1C-206ENST00000527551 SOCS7O14512 581 aa17.21■□□□□ 0.35
USH1C-206ENST00000527551 DIAPH1O60610 1272 aaKnown RBP17.21■□□□□ 0.35
USH1C-206ENST00000527551 IL13P35225 146 aa17.21■□□□□ 0.35
USH1C-206ENST00000527551 PKD1L3Q7Z443 1732 aa17.21■□□□□ 0.35
USH1C-206ENST00000527551 TATP17735 454 aaPredicted RBP17.2■□□□□ 0.34
USH1C-206ENST00000527551 MEGF6O75095 1541 aa17.2■□□□□ 0.34
USH1C-206ENST00000527551 BCL9O00512 1426 aa17.2■□□□□ 0.34
USH1C-206ENST00000527551 EP400Q96L91 3159 aa17.2■□□□□ 0.34
USH1C-206ENST00000527551 KDRP35968 1356 aa17.19■□□□□ 0.34
USH1C-206ENST00000527551 MYBBP1AQ9BQG0 1328 aaKnown RBP17.19■□□□□ 0.34
USH1C-206ENST00000527551 SHANK3Q9BYB0 1731 aa17.18■□□□□ 0.34
USH1C-206ENST00000527551 FAM196AQ6ZSG2 479 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms