RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 NRAPQ86VF7 1730 aa17.67■□□□□ 0.42
SMPD1-202ENST00000526280 NPC1L1Q9UHC9 1359 aa17.67■□□□□ 0.42
SMPD1-202ENST00000526280 LTN1O94822 1766 aa17.66■□□□□ 0.42
SMPD1-202ENST00000526280 EVA1CP58658 441 aa17.66■□□□□ 0.42
SMPD1-202ENST00000526280 RRS1Q15050 365 aaKnown RBP17.66■□□□□ 0.42
SMPD1-202ENST00000526280 MORC1Q86VD1 984 aa17.66■□□□□ 0.42
SMPD1-202ENST00000526280 ABCC6O95255 1503 aa17.65■□□□□ 0.42
SMPD1-202ENST00000526280 RXRBP28702 533 aa17.65■□□□□ 0.42
SMPD1-202ENST00000526280 RBM6P78332 1123 aaKnown RBP17.65■□□□□ 0.42
SMPD1-202ENST00000526280 DDX10Q13206 875 aaKnown RBP17.65■□□□□ 0.42
SMPD1-202ENST00000526280 IP6K1Q92551 441 aa17.65■□□□□ 0.42
SMPD1-202ENST00000526280 GJD4Q96KN9 370 aaPredicted RBP17.65■□□□□ 0.42
SMPD1-202ENST00000526280 STRN4Q9NRL3 753 aa17.65■□□□□ 0.42
SMPD1-202ENST00000526280 COL5A2P05997 1499 aaPredicted RBP17.64■□□□□ 0.41
SMPD1-202ENST00000526280 AMPHP49418 695 aa17.64■□□□□ 0.41
SMPD1-202ENST00000526280 CC2D1BQ5T0F9 858 aaKnown RBP17.64■□□□□ 0.41
SMPD1-202ENST00000526280 TNNT2P45379 298 aaPredicted RBP17.63■□□□□ 0.41
SMPD1-202ENST00000526280 RGPD5Q99666 1765 aa17.63■□□□□ 0.41
SMPD1-202ENST00000526280 SPATA31A5Q5VU36 1347 aa17.62■□□□□ 0.41
SMPD1-202ENST00000526280 SPATA31A7Q8IWB4 1347 aa17.62■□□□□ 0.41
SMPD1-202ENST00000526280 HOXC9P31274 260 aa17.62■□□□□ 0.41
SMPD1-202ENST00000526280 LARP1Q6PKG0 1096 aaKnown RBP17.62■□□□□ 0.41
SMPD1-202ENST00000526280 POLKQ9UBT6 870 aa17.62■□□□□ 0.41
SMPD1-202ENST00000526280 CCDC9Q9Y3X0 531 aaKnown RBP17.62■□□□□ 0.41
SMPD1-202ENST00000526280 RTL1A6NKG5 1358 aa17.61■□□□□ 0.41
SMPD1-202ENST00000526280 KIF24Q5T7B8 1368 aa17.61■□□□□ 0.41
SMPD1-202ENST00000526280 EMILIN1Q9Y6C2 1016 aa17.61■□□□□ 0.41
SMPD1-202ENST00000526280 BLMP54132 1417 aaPredicted RBP17.61■□□□□ 0.41
SMPD1-202ENST00000526280 MAP2P11137 1827 aaKnown RBP17.61■□□□□ 0.41
SMPD1-202ENST00000526280 SPATA31A1Q5TZJ5 1347 aa17.6■□□□□ 0.41
SMPD1-202ENST00000526280 WDR17Q8IZU2 1322 aa17.6■□□□□ 0.41
SMPD1-202ENST00000526280 ERBB3P21860 1342 aa17.59■□□□□ 0.41
SMPD1-202ENST00000526280 ANKRD24Q8TF21 1146 aa17.59■□□□□ 0.41
SMPD1-202ENST00000526280 GLI3P10071 1580 aa17.59■□□□□ 0.41
SMPD1-202ENST00000526280 FLT4P35916 1363 aa17.59■□□□□ 0.41
SMPD1-202ENST00000526280 PEAK1Q9H792 1746 aa17.58■□□□□ 0.41
SMPD1-202ENST00000526280 CRB1P82279 1406 aa17.58■□□□□ 0.4
SMPD1-202ENST00000526280 PPM1GO15355 546 aaPredicted RBP17.58■□□□□ 0.4
SMPD1-202ENST00000526280 CNGB1Q14028 1251 aaPredicted RBP17.58■□□□□ 0.4
SMPD1-202ENST00000526280 HSP90AB2PQ58FF8 381 aa17.58■□□□□ 0.4
SMPD1-202ENST00000526280 ONECUT3O60422 494 aaPredicted RBP17.57■□□□□ 0.4
SMPD1-202ENST00000526280 CSB-PGBD3P0DP91 1061 aa17.57■□□□□ 0.4
SMPD1-202ENST00000526280 TOM1L2Q6ZVM7 507 aa17.57■□□□□ 0.4
SMPD1-202ENST00000526280 INSRP06213 1382 aa17.57■□□□□ 0.4
SMPD1-202ENST00000526280 CDK12Q9NYV4 1490 aaPredicted RBP17.57■□□□□ 0.4
SMPD1-202ENST00000526280 CARD10Q9BWT7 1032 aa17.56■□□□□ 0.4
SMPD1-202ENST00000526280 USP35Q9P2H5 1018 aa17.56■□□□□ 0.4
SMPD1-202ENST00000526280 SMG6Q86US8 1419 aaKnown RBP17.56■□□□□ 0.4
SMPD1-202ENST00000526280 TCP11L2Q8N4U5 519 aa17.55■□□□□ 0.4
SMPD1-202ENST00000526280 LTV1Q96GA3 475 aaPredicted RBP17.55■□□□□ 0.4
SMPD1-202ENST00000526280 THRAP3Q9Y2W1 955 aaKnown RBP17.55■□□□□ 0.4
SMPD1-202ENST00000526280 FAM98CQ17RN3 349 aaKnown RBP17.54■□□□□ 0.4
SMPD1-202ENST00000526280 BARGINQ6ZT62 677 aa17.54■□□□□ 0.4
SMPD1-202ENST00000526280 NLRP2Q9NX02 1062 aa17.53■□□□□ 0.4
SMPD1-202ENST00000526280 RGS12O14924 1447 aa17.53■□□□□ 0.4
SMPD1-202ENST00000526280 MTHFSP49914 203 aa17.52■□□□□ 0.4
SMPD1-202ENST00000526280 SEPT12Q8IYM1 358 aa17.51■□□□□ 0.39
SMPD1-202ENST00000526280 FAM208AQ9UK61 1670 aaKnown RBP17.5■□□□□ 0.39
SMPD1-202ENST00000526280 PARD3Q8TEW0 1356 aa17.5■□□□□ 0.39
SMPD1-202ENST00000526280 NBPF6Q5VWK0 638 aa17.49■□□□□ 0.39
SMPD1-202ENST00000526280 NBPF4Q96M43 638 aa17.49■□□□□ 0.39
SMPD1-202ENST00000526280 PPP2R1AP30153 589 aa17.48■□□□□ 0.39
SMPD1-202ENST00000526280 EIF4A2Q14240 407 aaKnown RBP17.48■□□□□ 0.39
SMPD1-202ENST00000526280 THSD7AQ9UPZ6 1657 aa17.48■□□□□ 0.39
SMPD1-202ENST00000526280 A0A0G2JS52 829 aa17.47■□□□□ 0.39
SMPD1-202ENST00000526280 MYT1Q01538 1121 aa17.47■□□□□ 0.39
SMPD1-202ENST00000526280 RALBP1Q15311 655 aa17.47■□□□□ 0.39
SMPD1-202ENST00000526280 CDCA7Q9BWT1 371 aaPredicted RBP17.47■□□□□ 0.39
SMPD1-202ENST00000526280 RGPD2P0DJD1 1756 aa17.47■□□□□ 0.39
SMPD1-202ENST00000526280 DISP2A7MBM2 1401 aa17.46■□□□□ 0.39
SMPD1-202ENST00000526280 EYA1Q99502 592 aa17.46■□□□□ 0.38
SMPD1-202ENST00000526280 IL2RBP14784 551 aa17.45■□□□□ 0.38
SMPD1-202ENST00000526280 IL13P35225 146 aa17.45■□□□□ 0.38
SMPD1-202ENST00000526280 USHBP1Q8N6Y0 703 aa17.45■□□□□ 0.38
SMPD1-202ENST00000526280 UPF1Q92900 1129 aaKnown RBP eCLIP17.45■□□□□ 0.38
SMPD1-202ENST00000526280 BRWD3Q6RI45 1802 aa17.45■□□□□ 0.38
SMPD1-202ENST00000526280 KRT27Q7Z3Y8 459 aa17.44■□□□□ 0.38
SMPD1-202ENST00000526280 WNK3Q9BYP7 1800 aa17.43■□□□□ 0.38
SMPD1-202ENST00000526280 PRKRIP1Q9H875 184 aaPredicted RBP17.43■□□□□ 0.38
SMPD1-202ENST00000526280 NCAPD2Q15021 1401 aa17.43■□□□□ 0.38
SMPD1-202ENST00000526280 PARP4Q9UKK3 1724 aaKnown RBP17.43■□□□□ 0.38
SMPD1-202ENST00000526280 IGSF1Q8N6C5 1336 aa17.42■□□□□ 0.38
SMPD1-202ENST00000526280 DIAPH1O60610 1272 aaKnown RBP17.42■□□□□ 0.38
SMPD1-202ENST00000526280 DDB1Q16531 1140 aa17.42■□□□□ 0.38
SMPD1-202ENST00000526280 CFAP53Q96M91 514 aa17.42■□□□□ 0.38
SMPD1-202ENST00000526280 COL3A1P02461 1466 aaPredicted RBP17.41■□□□□ 0.38
SMPD1-202ENST00000526280 EXOC5O00471 708 aa17.41■□□□□ 0.38
SMPD1-202ENST00000526280 PDE3BQ13370 1112 aa17.41■□□□□ 0.38
SMPD1-202ENST00000526280 RAPGEF4Q8WZA2 1011 aa17.4■□□□□ 0.38
SMPD1-202ENST00000526280 MYBBP1AQ9BQG0 1328 aaKnown RBP17.39■□□□□ 0.37
SMPD1-202ENST00000526280 MEGF6O75095 1541 aa17.39■□□□□ 0.37
SMPD1-202ENST00000526280 LRRC37A3O60309 1634 aa17.38■□□□□ 0.37
SMPD1-202ENST00000526280 TATP17735 454 aaPredicted RBP17.38■□□□□ 0.37
SMPD1-202ENST00000526280 RGPD1P0DJD0 1748 aa17.38■□□□□ 0.37
SMPD1-202ENST00000526280 OVOS2A0A0G2JMS6 1433 aa17.37■□□□□ 0.37
SMPD1-202ENST00000526280 FAM182BQ5T319 152 aa17.37■□□□□ 0.37
SMPD1-202ENST00000526280 TNS2Q63HR2 1409 aa17.37■□□□□ 0.37
SMPD1-202ENST00000526280 SULT6B1Q6IMI4 303 aa17.36■□□□□ 0.37
SMPD1-202ENST00000526280 AEBP1Q8IUX7 1158 aa17.36■□□□□ 0.37
SMPD1-202ENST00000526280 MARCH10Q8NA82 808 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms