RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 LTV1Q96GA3 475 aaPredicted RBP9.41□□□□□ -0.9
CD44-221ENST00000526000 ZNF692Q9BU19 519 aaPredicted RBP9.41□□□□□ -0.9
CD44-221ENST00000526000 CARD10Q9BWT7 1032 aa9.41□□□□□ -0.9
CD44-221ENST00000526000 CRYBG1Q9Y4K1 1723 aa9.41□□□□□ -0.9
CD44-221ENST00000526000 TNS1Q9HBL0 1735 aaKnown RBP9.4□□□□□ -0.9
CD44-221ENST00000526000 C11orf95C9JLR9 678 aaPredicted RBP9.4□□□□□ -0.9
CD44-221ENST00000526000 KCNH5Q8NCM2 988 aa9.4□□□□□ -0.9
CD44-221ENST00000526000 PHRF1Q9P1Y6 1649 aaKnown RBP9.4□□□□□ -0.9
CD44-221ENST00000526000 OVOS2A0A0G2JMS6 1433 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 OVOS2A0A0J9YW53 1432 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 OVOS2Q6IE36 1432 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 NRKQ7Z2Y5 1582 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 PTGER2P43116 358 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 SLC15A2Q16348 729 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 KLHL34Q8N239 644 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 DDX54Q8TDD1 881 aaKnown RBP9.39□□□□□ -0.91
CD44-221ENST00000526000 SLC12A5Q9H2X9 1139 aa9.39□□□□□ -0.91
CD44-221ENST00000526000 KTN1Q86UP2 1357 aaKnown RBP9.38□□□□□ -0.91
CD44-221ENST00000526000 FBLN1P23142 703 aa9.38□□□□□ -0.91
CD44-221ENST00000526000 KCNQ4P56696 695 aa9.38□□□□□ -0.91
CD44-221ENST00000526000 SYT17Q9BSW7 474 aa9.38□□□□□ -0.91
CD44-221ENST00000526000 CDCA7Q9BWT1 371 aaPredicted RBP9.38□□□□□ -0.91
CD44-221ENST00000526000 FHDC1Q9C0D6 1143 aaPredicted RBP9.38□□□□□ -0.91
CD44-221ENST00000526000 ROCK2O75116 1388 aaKnown RBP9.37□□□□□ -0.91
CD44-221ENST00000526000 ITSN1Q15811 1721 aa9.37□□□□□ -0.91
CD44-221ENST00000526000 BRD4O60885 1362 aaPredicted RBP9.37□□□□□ -0.91
CD44-221ENST00000526000 LMO7Q8WWI1 1683 aa9.36□□□□□ -0.91
CD44-221ENST00000526000 PELP1Q8IZL8 1130 aaKnown RBP9.36□□□□□ -0.91
CD44-221ENST00000526000 ANKRD24Q8TF21 1146 aa9.36□□□□□ -0.91
CD44-221ENST00000526000 CARD11Q9BXL7 1154 aa9.36□□□□□ -0.91
CD44-221ENST00000526000 CPSF1Q10570 1443 aaKnown RBP9.36□□□□□ -0.91
CD44-221ENST00000526000 TTC21AQ8NDW8 1320 aa9.35□□□□□ -0.91
CD44-221ENST00000526000 IL2RBP14784 551 aa9.35□□□□□ -0.91
CD44-221ENST00000526000 SYTL4Q96C24 671 aaPredicted RBP9.35□□□□□ -0.91
CD44-221ENST00000526000 LRRC4BQ9NT99 713 aa9.35□□□□□ -0.91
CD44-221ENST00000526000 NINLQ9Y2I6 1382 aa9.35□□□□□ -0.91
CD44-221ENST00000526000 NUP188Q5SRE5 1749 aa9.34□□□□□ -0.91
CD44-221ENST00000526000 ZNF827Q17R98 1081 aa9.34□□□□□ -0.91
CD44-221ENST00000526000 HDGFL2Q7Z4V5 671 aaPredicted RBP9.34□□□□□ -0.91
CD44-221ENST00000526000 ZNF784Q8NCA9 323 aaPredicted RBP9.34□□□□□ -0.91
CD44-221ENST00000526000 ARXQ96QS3 562 aa9.34□□□□□ -0.91
CD44-221ENST00000526000 MTFR1LQ9H019 292 aa9.34□□□□□ -0.91
CD44-221ENST00000526000 TOPAZ1Q8N9V7 1692 aa9.34□□□□□ -0.91
CD44-221ENST00000526000 SLIT3O75094 1523 aa9.33□□□□□ -0.92
CD44-221ENST00000526000 PRIM1P49642 420 aaKnown RBP9.33□□□□□ -0.92
CD44-221ENST00000526000 GPR162Q16538 588 aa9.33□□□□□ -0.92
CD44-221ENST00000526000 CCDC7Q96M83 1385 aa9.33□□□□□ -0.92
CD44-221ENST00000526000 KAT6BQ8WYB5 2073 aa9.32□□□□□ -0.92
CD44-221ENST00000526000 MSH5O43196 834 aa9.32□□□□□ -0.92
CD44-221ENST00000526000 SGIP1Q9BQI5 828 aa9.32□□□□□ -0.92
CD44-221ENST00000526000 RREB1Q92766 1687 aa9.32□□□□□ -0.92
CD44-221ENST00000526000 ERBB3P21860 1342 aa9.31□□□□□ -0.92
CD44-221ENST00000526000 AMPHP49418 695 aa9.31□□□□□ -0.92
CD44-221ENST00000526000 IP6K1Q92551 441 aa9.31□□□□□ -0.92
CD44-221ENST00000526000 TFCP2L1Q9NZI6 479 aa9.31□□□□□ -0.92
CD44-221ENST00000526000 COL18A1P39060 1754 aa9.31□□□□□ -0.92
CD44-221ENST00000526000 PARP4Q9UKK3 1724 aaKnown RBP9.31□□□□□ -0.92
CD44-221ENST00000526000 QRICH2Q9H0J4 1663 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 SENP3-EIF4A1A0A087X0R7 540 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 USHBP1Q8N6Y0 703 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 TERF2IPQ9NYB0 399 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 PEAK1Q9H792 1746 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 KIAA1210Q9ULL0 1709 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 LRRC37A3O60309 1634 aa9.3□□□□□ -0.92
CD44-221ENST00000526000 PIK3C2AO00443 1686 aa9.29□□□□□ -0.92
CD44-221ENST00000526000 USP31Q70CQ4 1352 aa9.29□□□□□ -0.92
CD44-221ENST00000526000 SBNO2Q9Y2G9 1366 aa9.29□□□□□ -0.92
CD44-221ENST00000526000 AKT1S1Q96B36 256 aa9.29□□□□□ -0.92
CD44-221ENST00000526000 RGPD5Q99666 1765 aa9.29□□□□□ -0.92
CD44-221ENST00000526000 ST20-MTHFSA0A0A6YYL1 179 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 POLD1P28340 1107 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 RRS1Q15050 365 aaKnown RBP9.28□□□□□ -0.92
CD44-221ENST00000526000 MSL1Q68DK7 614 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 NLGN2Q8NFZ4 835 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 ZCRB1Q8TBF4 217 aaKnown RBP9.28□□□□□ -0.92
CD44-221ENST00000526000 COG3Q96JB2 828 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 GGNBP2Q9H3C7 697 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 BCL9O00512 1426 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 MAP3K19Q56UN5 1328 aa9.28□□□□□ -0.92
CD44-221ENST00000526000 SBF2Q86WG5 1849 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 HOXC9P31274 260 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 SMIM5Q71RC9 77 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 POTEDQ86YR6 584 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 WWC3Q9ULE0 1092 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 TNS2Q63HR2 1409 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 PNPLA7Q6ZV29 1317 aa9.27□□□□□ -0.93
CD44-221ENST00000526000 NFAT5O94916 1531 aa9.26□□□□□ -0.93
CD44-221ENST00000526000 C1QTNF8P60827 252 aa9.26□□□□□ -0.93
CD44-221ENST00000526000 NBPF6Q5VWK0 638 aa9.26□□□□□ -0.93
CD44-221ENST00000526000 NBPF4Q96M43 638 aa9.26□□□□□ -0.93
CD44-221ENST00000526000 CCNL1Q9UK58 526 aaPredicted RBP9.26□□□□□ -0.93
CD44-221ENST00000526000 CD163L1Q9NR16 1453 aa9.26□□□□□ -0.93
CD44-221ENST00000526000 A0A1W2PP64 1363 aa9.25□□□□□ -0.93
CD44-221ENST00000526000 TRPM1Q7Z4N2 1603 aa9.25□□□□□ -0.93
CD44-221ENST00000526000 SLC27A3Q5K4L6 730 aa9.25□□□□□ -0.93
CD44-221ENST00000526000 COL23A1Q86Y22 540 aaPredicted RBP9.25□□□□□ -0.93
CD44-221ENST00000526000 MYOM1P52179 1685 aa9.25□□□□□ -0.93
CD44-221ENST00000526000 SLC16A10Q8TF71 515 aa9.24□□□□□ -0.93
CD44-221ENST00000526000 CASZ1Q86V15 1759 aa9.24□□□□□ -0.93
CD44-221ENST00000526000 TONSLQ96HA7 1378 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 262.7 ms