RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	MTMR14	Q8NCE2	650 aa		5.38	□□□□□ -1.55
CD44-216	ENST00000525293	TRIM47	Q96LD4	638 aa		5.38	□□□□□ -1.55
CD44-216	ENST00000525293	KCTD15	Q96SI1	283 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-216	ENST00000525293	CCDC116	Q8IYX3	515 aa		5.37	□□□□□ -1.55
CD44-216	ENST00000525293	KIFC2	Q96AC6	838 aa		5.37	□□□□□ -1.55
CD44-216	ENST00000525293	CDV3	Q9UKY7	258 aa	Known RBP	5.37	□□□□□ -1.55
CD44-216	ENST00000525293	ZBBX	A8MT70	800 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	FBXO45	P0C2W1	286 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	SCARF1	Q14162	830 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	5.36	□□□□□ -1.55
CD44-216	ENST00000525293	MRPL14	Q6P1L8	145 aa	Known RBP	5.36	□□□□□ -1.55
CD44-216	ENST00000525293	TREML4	Q6UXN2	200 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	DZIP3	Q86Y13	1208 aa	Known RBP	5.36	□□□□□ -1.55
CD44-216	ENST00000525293	ZFP42	Q96MM3	310 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	PURB	Q96QR8	312 aa	Known RBP	5.36	□□□□□ -1.55
CD44-216	ENST00000525293	EMILIN1	Q9Y6C2	1016 aa		5.36	□□□□□ -1.55
CD44-216	ENST00000525293	RAB15	P59190	212 aa		5.35	□□□□□ -1.55
CD44-216	ENST00000525293	INTS6L	Q5JSJ4	861 aa	Known RBP	5.35	□□□□□ -1.55
CD44-216	ENST00000525293	PCDHB9	Q9Y5E1	797 aa		5.35	□□□□□ -1.55
CD44-216	ENST00000525293	NDUFB9	Q9Y6M9	179 aa		5.35	□□□□□ -1.55
CD44-216	ENST00000525293	APBB1	O00213	710 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	SOCS7	O14512	581 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	DHX9	Q08211	1270 aa	Known RBP	5.34	□□□□□ -1.55
CD44-216	ENST00000525293	CBLB	Q13191	982 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	NBPF20	Q3BBV1	942 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	C6orf118	Q5T5N4	469 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	PGPEP1	Q9NXJ5	209 aa		5.34	□□□□□ -1.55
CD44-216	ENST00000525293	GPR37L1	O60883	481 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	UPP2	O95045	317 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	NR1H3	Q13133	447 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	MEIOB	Q8N635	442 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	TMPRSS4	Q9NRS4	437 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	TBC1D2B	Q9UPU7	963 aa		5.33	□□□□□ -1.56
CD44-216	ENST00000525293	ERVH48-1	M5A8F1	160 aa		5.32	□□□□□ -1.56
CD44-216	ENST00000525293	BMP2	P12643	396 aa		5.32	□□□□□ -1.56
CD44-216	ENST00000525293	LINC00528	Q8N1L1	170 aa		5.32	□□□□□ -1.56
CD44-216	ENST00000525293	SOBP	A7XYQ1	873 aa		5.31	□□□□□ -1.56
CD44-216	ENST00000525293	ESPN	B1AK53	854 aa		5.31	□□□□□ -1.56
CD44-216	ENST00000525293	GIGYF1	O75420	1035 aa	Predicted RBP	5.31	□□□□□ -1.56
CD44-216	ENST00000525293		Q6ZVU0	165 aa		5.31	□□□□□ -1.56
CD44-216	ENST00000525293	TSEN34	Q9BSV6	310 aa	Known RBP	5.31	□□□□□ -1.56
CD44-216	ENST00000525293	PRM3	Q9NNZ6	103 aa		5.31	□□□□□ -1.56
CD44-216	ENST00000525293	ZNF330	Q9Y3S2	320 aa	Predicted RBP	5.31	□□□□□ -1.56
CD44-216	ENST00000525293	ZNF784	Q8NCA9	323 aa	Predicted RBP	5.3	□□□□□ -1.56
CD44-216	ENST00000525293	AGBL1	Q96MI9	1066 aa		5.3	□□□□□ -1.56
CD44-216	ENST00000525293	TERT	O14746	1132 aa	Known RBP	5.29	□□□□□ -1.56
CD44-216	ENST00000525293	LILRA1	O75019	489 aa		5.29	□□□□□ -1.56
CD44-216	ENST00000525293	WFS1	O76024	890 aa		5.29	□□□□□ -1.56
CD44-216	ENST00000525293	RELB	Q01201	579 aa		5.29	□□□□□ -1.56
CD44-216	ENST00000525293	SEPT12	Q8IYM1	358 aa		5.29	□□□□□ -1.56
CD44-216	ENST00000525293	GDPD2	Q9HCC8	539 aa		5.29	□□□□□ -1.56
CD44-216	ENST00000525293	MAN1A2	O60476	641 aa		5.28	□□□□□ -1.56
CD44-216	ENST00000525293	ADD1	P35611	737 aa	Known RBP	5.28	□□□□□ -1.56
CD44-216	ENST00000525293	ABL2	P42684	1182 aa		5.28	□□□□□ -1.56
CD44-216	ENST00000525293	MCCD1	P59942	119 aa	Predicted RBP	5.28	□□□□□ -1.56
CD44-216	ENST00000525293	NFX1	Q12986	1120 aa	Known RBP	5.28	□□□□□ -1.56
CD44-216	ENST00000525293	IRF5	Q13568	498 aa		5.28	□□□□□ -1.56
CD44-216	ENST00000525293	MCM6	Q14566	821 aa		5.28	□□□□□ -1.56
CD44-216	ENST00000525293	ZNF395	Q9H8N7	513 aa	Predicted RBP	5.28	□□□□□ -1.56
CD44-216	ENST00000525293	CYLD	Q9NQC7	956 aa		5.28	□□□□□ -1.56
CD44-216	ENST00000525293	NXF1	Q9UBU9	619 aa	Known RBP	5.28	□□□□□ -1.56
CD44-216	ENST00000525293	SOS2	Q07890	1332 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-216	ENST00000525293	FIGNL2	A6NMB9	653 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	TTLL8	A6PVC2	850 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	SPINT1	O43278	529 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	VEGFB	P49765	207 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	RNF20	Q5VTR2	975 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	ZNF592	Q92610	1267 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	DNMT3L	Q9UJW3	386 aa		5.27	□□□□□ -1.57
CD44-216	ENST00000525293	ADH1A	P07327	375 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	EIF4G2	P78344	907 aa	Known RBP eCLIP	5.26	□□□□□ -1.57
CD44-216	ENST00000525293	VAC14	Q08AM6	782 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	TMEM132A	Q24JP5	1023 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	SLC16A10	Q8TF71	515 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	INSM2	Q96T92	566 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-216	ENST00000525293	CEP126	Q9P2H0	1117 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	STK17A	Q9UEE5	414 aa		5.26	□□□□□ -1.57
CD44-216	ENST00000525293	PTGIR	P43119	386 aa		5.25	□□□□□ -1.57
CD44-216	ENST00000525293	CTSO	P43234	321 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-216	ENST00000525293	CCDC125	Q86Z20	511 aa		5.25	□□□□□ -1.57
CD44-216	ENST00000525293	KDF1	Q8NAX2	398 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-216	ENST00000525293	POLM	Q9NP87	494 aa	Predicted RBP	5.25	□□□□□ -1.57
CD44-216	ENST00000525293	COG6	Q9Y2V7	657 aa		5.25	□□□□□ -1.57
CD44-216	ENST00000525293	PCDHB11	Q9Y5F2	797 aa		5.25	□□□□□ -1.57
CD44-216	ENST00000525293	WIPF1	O43516	503 aa		5.24	□□□□□ -1.57
CD44-216	ENST00000525293	ERVK-9	P63128	1117 aa		5.24	□□□□□ -1.57
CD44-216	ENST00000525293	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	5.24	□□□□□ -1.57
CD44-216	ENST00000525293	LCE2C	Q5TA81	110 aa		5.24	□□□□□ -1.57
CD44-216	ENST00000525293	CC2D2B	Q6DHV5	1058 aa		5.24	□□□□□ -1.57
CD44-216	ENST00000525293	TRIM52	Q96A61	297 aa		5.24	□□□□□ -1.57
CD44-216	ENST00000525293	ATP5J2-PTCD1	G3V325	749 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	SCTR	P47872	440 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	WASHC4	Q2M389	1173 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	TSGA10IP	Q3SY00	556 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	NPAS3	Q8IXF0	933 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	POM121	Q96HA1	1249 aa		5.23	□□□□□ -1.57
CD44-216	ENST00000525293	CCDC85A	Q96PX6	553 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-216	ENST00000525293	CDCA7	Q9BWT1	371 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-216	ENST00000525293	ESF1	Q9H501	851 aa	Known RBP	5.23	□□□□□ -1.57
CD44-216	ENST00000525293	LOC100996750	A0A140TA64	210 aa		5.22	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms