RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ZNF772Q68DY9 489 aaPredicted RBP6.28□□□□□ -1.4
CHMP4A-202ENST00000524955 USHBP1Q8N6Y0 703 aa6.28□□□□□ -1.4
CHMP4A-202ENST00000524955 ANKRD24Q8TF21 1146 aa6.28□□□□□ -1.4
CHMP4A-202ENST00000524955 CAMTA1Q9Y6Y1 1673 aa6.28□□□□□ -1.4
CHMP4A-202ENST00000524955 SLIT2O94813 1529 aa6.28□□□□□ -1.4
CHMP4A-202ENST00000524955 RXRBP28702 533 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 HOXC9P31274 260 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 FAM98CQ17RN3 349 aaKnown RBP6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 FAM182BQ5T319 152 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 TOM1L2Q6ZVM7 507 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 GJD4Q96KN9 370 aaPredicted RBP6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 NLRP2Q9NX02 1062 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 POLKQ9UBT6 870 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 TRPC5Q9UL62 973 aaPredicted RBP6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 CPDO75976 1380 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 AATKQ6ZMQ8 1374 aa6.27□□□□□ -1.41
CHMP4A-202ENST00000524955 MTHFSP49914 203 aa6.26□□□□□ -1.41
CHMP4A-202ENST00000524955 VPS72Q15906 364 aa6.26□□□□□ -1.41
CHMP4A-202ENST00000524955 IP6K1Q92551 441 aa6.26□□□□□ -1.41
CHMP4A-202ENST00000524955 PLCH1Q4KWH8 1693 aa6.26□□□□□ -1.41
CHMP4A-202ENST00000524955 ATRNO75882 1429 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 KIF20BQ96Q89 1820 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 RBM6P78332 1123 aaKnown RBP6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 COL5A2P05997 1499 aaPredicted RBP6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 COL14A1Q05707 1796 aaKnown RBP6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 PEAK1Q9H792 1746 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 ERBB3P21860 1342 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 SPATA31A1Q5TZJ5 1347 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 SPATA31A5Q5VU36 1347 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 SPATA31A7Q8IWB4 1347 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 WDR17Q8IZU2 1322 aa6.25□□□□□ -1.41
CHMP4A-202ENST00000524955 LMO7Q8WWI1 1683 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 NSD2O96028 1365 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 PPP2R1AP30153 589 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 EIF4A2Q14240 407 aaKnown RBP6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 NBPF6Q5VWK0 638 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 SEPT12Q8IYM1 358 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 NBPF4Q96M43 638 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 RGS12O14924 1447 aa6.24□□□□□ -1.41
CHMP4A-202ENST00000524955 GLI3P10071 1580 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 FLT4P35916 1363 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 NRAPQ86VF7 1730 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 TCP11L2Q8N4U5 519 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 EYA1Q99502 592 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 COL18A1P39060 1754 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 CRB1P82279 1406 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 USP54Q70EL1 1684 aa6.23□□□□□ -1.41
CHMP4A-202ENST00000524955 INSRP06213 1382 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 SENP3-EIF4A1A0A087X0R7 540 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 U2SURPO15042 1029 aaKnown RBP6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 HMOX1P09601 288 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 CCDC184Q52MB2 194 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 AEBP1Q8IUX7 1158 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 CARD10Q9BWT7 1032 aa6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 BLMP54132 1417 aaPredicted RBP6.22□□□□□ -1.41
CHMP4A-202ENST00000524955 LTN1O94822 1766 aa6.21□□□□□ -1.41
CHMP4A-202ENST00000524955 RGPD5Q99666 1765 aa6.21□□□□□ -1.41
CHMP4A-202ENST00000524955 RTL1A6NKG5 1358 aa6.21□□□□□ -1.41
CHMP4A-202ENST00000524955 NPC1L1Q9UHC9 1359 aa6.21□□□□□ -1.41
CHMP4A-202ENST00000524955 IL13P35225 146 aa6.21□□□□□ -1.42
CHMP4A-202ENST00000524955 DDX54Q8TDD1 881 aaKnown RBP6.21□□□□□ -1.42
CHMP4A-202ENST00000524955 PRKRIP1Q9H875 184 aaPredicted RBP6.21□□□□□ -1.42
CHMP4A-202ENST00000524955 PARD3Q8TEW0 1356 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 NWD2Q9ULI1 1742 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 ANKRD26Q9UPS8 1709 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 SMG6Q86US8 1419 aaKnown RBP6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 DIAPH1O60610 1272 aaKnown RBP6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 IL2RBP14784 551 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 SULT6B1Q6IMI4 303 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 BARGINQ6ZT62 677 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 PTF1AQ7RTS3 328 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 KRT27Q7Z3Y8 459 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 MEGF6O75095 1541 aa6.2□□□□□ -1.42
CHMP4A-202ENST00000524955 EXOC5O00471 708 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 ANP32CO43423 234 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 ONECUT3O60422 494 aaPredicted RBP6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 PDE3BQ13370 1112 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 DDB1Q16531 1140 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 MARCH10Q8NA82 808 aaPredicted RBP6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 RAPGEF4Q8WZA2 1011 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 ACSBG1Q96GR2 724 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 CFAP53Q96M91 514 aa6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 CDK12Q9NYV4 1490 aaPredicted RBP6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 MYBBP1AQ9BQG0 1328 aaKnown RBP6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.19□□□□□ -1.42
CHMP4A-202ENST00000524955 DISP2A7MBM2 1401 aa6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 COL3A1P02461 1466 aaPredicted RBP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 U2AF1L5P0DN76 240 aaPredicted RBP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 TATP17735 454 aaPredicted RBP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 U2AF1Q01081 240 aaKnown RBP eCLIP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 RALBP1Q15311 655 aa6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 THRAP3Q9Y2W1 955 aaKnown RBP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 IGSF1Q8N6C5 1336 aa6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 RGPD2P0DJD1 1756 aa6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 MAP2P11137 1827 aaKnown RBP6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 KIF24Q5T7B8 1368 aa6.18□□□□□ -1.42
CHMP4A-202ENST00000524955 ABCC6O95255 1503 aa6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 KCNQ2O43526 872 aa6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 TRIM37O94972 964 aa6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 DIEXFQ68CQ4 756 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms