RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 BLMP54132 1417 aaPredicted RBP22.59■■□□□ 1.21
LSM1-205ENST00000523511 CRB1P82279 1406 aa22.59■■□□□ 1.21
LSM1-205ENST00000523511 CDCA7Q9BWT1 371 aaPredicted RBP22.59■■□□□ 1.21
LSM1-205ENST00000523511 WDR17Q8IZU2 1322 aa22.58■■□□□ 1.21
LSM1-205ENST00000523511 FAM196AQ6ZSG2 479 aa22.58■■□□□ 1.21
LSM1-205ENST00000523511 AXIN2Q9Y2T1 843 aa22.58■■□□□ 1.21
LSM1-205ENST00000523511 COL5A2P05997 1499 aaPredicted RBP22.58■■□□□ 1.2
LSM1-205ENST00000523511 POLR3GLQ9BT43 218 aa22.56■■□□□ 1.2
LSM1-205ENST00000523511 MON2Q7Z3U7 1717 aa22.55■■□□□ 1.2
LSM1-205ENST00000523511 CARD10Q9BWT7 1032 aa22.55■■□□□ 1.2
LSM1-205ENST00000523511 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
LSM1-205ENST00000523511 BAG6P46379 1132 aa22.54■■□□□ 1.2
LSM1-205ENST00000523511 LMO7Q8WWI1 1683 aa22.53■■□□□ 1.2
LSM1-205ENST00000523511 DDB1Q16531 1140 aa22.52■■□□□ 1.2
LSM1-205ENST00000523511 FYB1O15117 783 aa22.51■■□□□ 1.19
LSM1-205ENST00000523511 AMPHP49418 695 aa22.51■■□□□ 1.19
LSM1-205ENST00000523511 IP6K1Q92551 441 aa22.5■■□□□ 1.19
LSM1-205ENST00000523511 NLRP2Q9NX02 1062 aa22.5■■□□□ 1.19
LSM1-205ENST00000523511 CCDC7Q96M83 1385 aa22.5■■□□□ 1.19
LSM1-205ENST00000523511 NFAT5O94916 1531 aa22.49■■□□□ 1.19
LSM1-205ENST00000523511 ABCC6O95255 1503 aa22.49■■□□□ 1.19
LSM1-205ENST00000523511 EXOC5O00471 708 aa22.49■■□□□ 1.19
LSM1-205ENST00000523511 OVOS2A0A0J9YW53 1432 aa22.48■■□□□ 1.19
LSM1-205ENST00000523511 OVOS2Q6IE36 1432 aa22.48■■□□□ 1.19
LSM1-205ENST00000523511 FAM182BQ5T319 152 aa22.48■■□□□ 1.19
LSM1-205ENST00000523511 ANKRD24Q8TF21 1146 aa22.48■■□□□ 1.19
LSM1-205ENST00000523511 GGNBP2Q9H3C7 697 aa22.48■■□□□ 1.19
LSM1-205ENST00000523511 ERBB3P21860 1342 aa22.47■■□□□ 1.19
LSM1-205ENST00000523511 CGNL1Q0VF96 1302 aa22.46■■□□□ 1.19
LSM1-205ENST00000523511 DEFB132Q7Z7B7 95 aa22.45■■□□□ 1.18
LSM1-205ENST00000523511 THSD7AQ9UPZ6 1657 aa22.45■■□□□ 1.18
LSM1-205ENST00000523511 CARD14Q9BXL6 1004 aa22.44■■□□□ 1.18
LSM1-205ENST00000523511 BRWD3Q6RI45 1802 aa22.43■■□□□ 1.18
LSM1-205ENST00000523511 MAP3K19Q56UN5 1328 aa22.43■■□□□ 1.18
LSM1-205ENST00000523511 TRIM37O94972 964 aa22.43■■□□□ 1.18
LSM1-205ENST00000523511 USP54Q70EL1 1684 aa22.42■■□□□ 1.18
LSM1-205ENST00000523511 NSD3Q9BZ95 1437 aa22.41■■□□□ 1.18
LSM1-205ENST00000523511 COL18A1P39060 1754 aa22.41■■□□□ 1.18
LSM1-205ENST00000523511 APBA3O96018 575 aa22.41■■□□□ 1.18
LSM1-205ENST00000523511 IL2RBP14784 551 aa22.41■■□□□ 1.18
LSM1-205ENST00000523511 HOXC9P31274 260 aa22.41■■□□□ 1.18
LSM1-205ENST00000523511 LTV1Q96GA3 475 aaPredicted RBP22.41■■□□□ 1.18
LSM1-205ENST00000523511 RTL1A6NKG5 1358 aa22.38■■□□□ 1.17
LSM1-205ENST00000523511 EN1Q05925 392 aaPredicted RBP22.38■■□□□ 1.17
LSM1-205ENST00000523511 RRS1Q15050 365 aaKnown RBP22.38■■□□□ 1.17
LSM1-205ENST00000523511 PANK3Q9H999 370 aa22.38■■□□□ 1.17
LSM1-205ENST00000523511 OVOS2A0A0G2JMS6 1433 aa22.38■■□□□ 1.17
LSM1-205ENST00000523511 KIF24Q5T7B8 1368 aa22.38■■□□□ 1.17
LSM1-205ENST00000523511 FBLN1P23142 703 aa22.36■■□□□ 1.17
LSM1-205ENST00000523511 EP400Q96L91 3159 aa22.36■■□□□ 1.17
LSM1-205ENST00000523511 SMG6Q86US8 1419 aaKnown RBP22.36■■□□□ 1.17
LSM1-205ENST00000523511 MARCH10Q8NA82 808 aaPredicted RBP22.34■■□□□ 1.17
LSM1-205ENST00000523511 KNSTRNQ9Y448 316 aa22.34■■□□□ 1.17
LSM1-205ENST00000523511 PARD3Q8TEW0 1356 aa22.34■■□□□ 1.17
LSM1-205ENST00000523511 BCL11BQ9C0K0 894 aaPredicted RBP22.33■■□□□ 1.17
LSM1-205ENST00000523511 DISP2A7MBM2 1401 aa22.32■■□□□ 1.16
LSM1-205ENST00000523511 PPM1GO15355 546 aaPredicted RBP22.32■■□□□ 1.16
LSM1-205ENST00000523511 FLT4P35916 1363 aa22.32■■□□□ 1.16
LSM1-205ENST00000523511 PARP4Q9UKK3 1724 aaKnown RBP22.31■■□□□ 1.16
LSM1-205ENST00000523511 INSRP06213 1382 aa22.3■■□□□ 1.16
LSM1-205ENST00000523511 EZH2Q15910 746 aaKnown RBP22.3■■□□□ 1.16
LSM1-205ENST00000523511 NBPF14Q5TI25 921 aa22.3■■□□□ 1.16
LSM1-205ENST00000523511 CAMKK2Q96RR4 588 aa22.3■■□□□ 1.16
LSM1-205ENST00000523511 RGPD1P0DJD0 1748 aa22.29■■□□□ 1.16
LSM1-205ENST00000523511 HSP90AB2PQ58FF8 381 aa22.29■■□□□ 1.16
LSM1-205ENST00000523511 RAPGEF4Q8WZA2 1011 aa22.29■■□□□ 1.16
LSM1-205ENST00000523511 BCL9O00512 1426 aa22.29■■□□□ 1.16
LSM1-205ENST00000523511 NSD2O96028 1365 aa22.28■■□□□ 1.16
LSM1-205ENST00000523511 LTN1O94822 1766 aa22.28■■□□□ 1.16
LSM1-205ENST00000523511 PLSCR1O15162 318 aa22.28■■□□□ 1.16
LSM1-205ENST00000523511 MORC1Q86VD1 984 aa22.27■■□□□ 1.16
LSM1-205ENST00000523511 DDX54Q8TDD1 881 aaKnown RBP22.27■■□□□ 1.16
LSM1-205ENST00000523511 TNS2Q63HR2 1409 aa22.26■■□□□ 1.15
LSM1-205ENST00000523511 RGPD5Q99666 1765 aa22.26■■□□□ 1.15
LSM1-205ENST00000523511 ZCRB1Q8TBF4 217 aaKnown RBP22.26■■□□□ 1.15
LSM1-205ENST00000523511 EMILIN1Q9Y6C2 1016 aa22.26■■□□□ 1.15
LSM1-205ENST00000523511 KIF7Q2M1P5 1343 aa22.26■■□□□ 1.15
LSM1-205ENST00000523511 WASHC2AQ641Q2 1341 aa22.26■■□□□ 1.15
LSM1-205ENST00000523511 TATP17735 454 aaPredicted RBP22.25■■□□□ 1.15
LSM1-205ENST00000523511 TNNT2P45379 298 aaPredicted RBP22.25■■□□□ 1.15
LSM1-205ENST00000523511 NBPF6Q5VWK0 638 aa22.25■■□□□ 1.15
LSM1-205ENST00000523511 NBPF4Q96M43 638 aa22.25■■□□□ 1.15
LSM1-205ENST00000523511 MYOM1P52179 1685 aa22.25■■□□□ 1.15
LSM1-205ENST00000523511 POLKQ9UBT6 870 aa22.24■■□□□ 1.15
LSM1-205ENST00000523511 LRRC37A3O60309 1634 aa22.23■■□□□ 1.15
LSM1-205ENST00000523511 KIF20BQ96Q89 1820 aa22.21■■□□□ 1.15
LSM1-205ENST00000523511 FAM208AQ9UK61 1670 aaKnown RBP22.2■■□□□ 1.14
LSM1-205ENST00000523511 ACSBG1Q96GR2 724 aa22.19■■□□□ 1.14
LSM1-205ENST00000523511 R3HDM1Q15032 1099 aaKnown RBP22.18■■□□□ 1.14
LSM1-205ENST00000523511 USHBP1Q8N6Y0 703 aa22.18■■□□□ 1.14
LSM1-205ENST00000523511 PSDA5PKW4 1024 aaPredicted RBP22.17■■□□□ 1.14
LSM1-205ENST00000523511 KCNQ2O43526 872 aa22.16■■□□□ 1.14
LSM1-205ENST00000523511 SPG7Q9UQ90 795 aa22.16■■□□□ 1.14
LSM1-205ENST00000523511 PEAK1Q9H792 1746 aa22.14■■□□□ 1.14
LSM1-205ENST00000523511 TNS1Q9HBL0 1735 aaKnown RBP22.14■■□□□ 1.14
LSM1-205ENST00000523511 HMGB2P26583 209 aaKnown RBP22.14■■□□□ 1.13
LSM1-205ENST00000523511 SYTL4Q96C24 671 aaPredicted RBP22.14■■□□□ 1.13
LSM1-205ENST00000523511 WNK3Q9BYP7 1800 aa22.14■■□□□ 1.13
LSM1-205ENST00000523511 PCDH11XQ9BZA7 1347 aa22.13■■□□□ 1.13
LSM1-205ENST00000523511 PCDH11YQ9BZA8 1340 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms