RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 ARHGEF25Q86VW2 580 aa11.92□□□□□ -0.5
CSMD1-208ENST00000520561 U2AF1L5P0DN76 240 aaPredicted RBP11.91□□□□□ -0.5
CSMD1-208ENST00000520561 ZC3H6P61129 1189 aaKnown RBP11.91□□□□□ -0.5
CSMD1-208ENST00000520561 U2AF1Q01081 240 aaKnown RBP eCLIP11.91□□□□□ -0.5
CSMD1-208ENST00000520561 IP6K1Q92551 441 aa11.91□□□□□ -0.5
CSMD1-208ENST00000520561 KIAA0232Q92628 1395 aa11.91□□□□□ -0.5
CSMD1-208ENST00000520561 IL13P35225 146 aa11.9□□□□□ -0.5
CSMD1-208ENST00000520561 EIF4A2Q14240 407 aaKnown RBP11.9□□□□□ -0.5
CSMD1-208ENST00000520561 HSP90AB2PQ58FF8 381 aa11.9□□□□□ -0.5
CSMD1-208ENST00000520561 ADAMTS8Q9UP79 889 aa11.9□□□□□ -0.5
CSMD1-208ENST00000520561 JCADQ9P266 1359 aa11.9□□□□□ -0.5
CSMD1-208ENST00000520561 RGPD1P0DJD0 1748 aa11.89□□□□□ -0.51
CSMD1-208ENST00000520561 HNRNPUQ00839 825 aaKnown RBP eCLIP11.89□□□□□ -0.51
CSMD1-208ENST00000520561 PNNQ9H307 717 aaKnown RBP11.89□□□□□ -0.51
CSMD1-208ENST00000520561 PRDM11Q9NQV5 511 aa11.89□□□□□ -0.51
CSMD1-208ENST00000520561 FAM208AQ9UK61 1670 aaKnown RBP11.89□□□□□ -0.51
CSMD1-208ENST00000520561 LMO7Q8WWI1 1683 aa11.88□□□□□ -0.51
CSMD1-208ENST00000520561 COL18A1P39060 1754 aa11.88□□□□□ -0.51
CSMD1-208ENST00000520561 MAPK8IP3Q9UPT6 1336 aa11.87□□□□□ -0.51
CSMD1-208ENST00000520561 COL14A1Q05707 1796 aaKnown RBP11.87□□□□□ -0.51
CSMD1-208ENST00000520561 NEFMP07197 916 aa11.87□□□□□ -0.51
CSMD1-208ENST00000520561 LTV1Q96GA3 475 aaPredicted RBP11.87□□□□□ -0.51
CSMD1-208ENST00000520561 CHRNA2Q15822 529 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 CCDC146Q8IYE0 955 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 ANKRD24Q8TF21 1146 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 RUNDC1Q96C34 613 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 CAMTA1Q9Y6Y1 1673 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 ERBB3P21860 1342 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 IGSF1Q8N6C5 1336 aa11.86□□□□□ -0.51
CSMD1-208ENST00000520561 RGPD5Q99666 1765 aa11.85□□□□□ -0.51
CSMD1-208ENST00000520561 FCHSD2O94868 740 aa11.85□□□□□ -0.51
CSMD1-208ENST00000520561 SPATA31A6Q5VVP1 1343 aa11.85□□□□□ -0.51
CSMD1-208ENST00000520561 COL5A2P05997 1499 aaPredicted RBP11.84□□□□□ -0.51
CSMD1-208ENST00000520561 HMOX1P09601 288 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 CSB-PGBD3P0DP91 1061 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 PRKAR2BP31323 418 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 HSPA1LP34931 641 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 SULT6B1Q6IMI4 303 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 EYA1Q99502 592 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 RSPH6AQ9H0K4 717 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 PLCH1Q4KWH8 1693 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 ZBED9Q6R2W3 1325 aa11.84□□□□□ -0.51
CSMD1-208ENST00000520561 KDRP35968 1356 aa11.83□□□□□ -0.52
CSMD1-208ENST00000520561 NUTM2BA6NNL0 878 aaPredicted RBP11.83□□□□□ -0.52
CSMD1-208ENST00000520561 NUTM2EB1AL46 878 aaPredicted RBP11.83□□□□□ -0.52
CSMD1-208ENST00000520561 NUTM2AQ8IVF1 878 aaPredicted RBP11.83□□□□□ -0.52
CSMD1-208ENST00000520561 AXIN2Q9Y2T1 843 aa11.83□□□□□ -0.52
CSMD1-208ENST00000520561 CENPBP07199 599 aaPredicted RBP11.82□□□□□ -0.52
CSMD1-208ENST00000520561 NGEFQ8N5V2 710 aa11.82□□□□□ -0.52
CSMD1-208ENST00000520561 NCAPD2Q15021 1401 aa11.82□□□□□ -0.52
CSMD1-208ENST00000520561 RGPD2P0DJD1 1756 aa11.82□□□□□ -0.52
CSMD1-208ENST00000520561 APAF1O14727 1248 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 ADAMTS2O95450 1211 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 AEBP1Q8IUX7 1158 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 PLEKHF1Q96S99 279 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 NLRP2Q9NX02 1062 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 WDR17Q8IZU2 1322 aa11.81□□□□□ -0.52
CSMD1-208ENST00000520561 NWD2Q9ULI1 1742 aa11.8□□□□□ -0.52
CSMD1-208ENST00000520561 FAM83GA6ND36 823 aa11.8□□□□□ -0.52
CSMD1-208ENST00000520561 TCP11L2Q8N4U5 519 aa11.8□□□□□ -0.52
CSMD1-208ENST00000520561 USHBP1Q8N6Y0 703 aa11.8□□□□□ -0.52
CSMD1-208ENST00000520561 NRAPQ86VF7 1730 aa11.8□□□□□ -0.52
CSMD1-208ENST00000520561 LRP6O75581 1613 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 SENP3-EIF4A1A0A087X0R7 540 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 EVA1CP58658 441 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 NBPF6Q5VWK0 638 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 NBPF4Q96M43 638 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 STRN4Q9NRL3 753 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 BTG4Q9NY30 223 aa11.79□□□□□ -0.52
CSMD1-208ENST00000520561 SALL2Q9Y467 1007 aaPredicted RBP11.79□□□□□ -0.52
CSMD1-208ENST00000520561 TOM1L2Q6ZVM7 507 aa11.78□□□□□ -0.52
CSMD1-208ENST00000520561 PLEKHG2Q9H7P9 1386 aa11.78□□□□□ -0.52
CSMD1-208ENST00000520561 CRB1P82279 1406 aa11.77□□□□□ -0.52
CSMD1-208ENST00000520561 PARP4Q9UKK3 1724 aaKnown RBP11.77□□□□□ -0.52
CSMD1-208ENST00000520561 SLIT2O94813 1529 aa11.77□□□□□ -0.52
CSMD1-208ENST00000520561 TMPOP42166 694 aaKnown RBP11.77□□□□□ -0.53
CSMD1-208ENST00000520561 LMOD3Q0VAK6 560 aa11.77□□□□□ -0.53
CSMD1-208ENST00000520561 NEUROD2Q15784 382 aa11.77□□□□□ -0.53
CSMD1-208ENST00000520561 NFE2L2Q16236 605 aa11.77□□□□□ -0.53
CSMD1-208ENST00000520561 NCBP3Q53F19 620 aaKnown RBP11.77□□□□□ -0.53
CSMD1-208ENST00000520561 MEX3CQ5U5Q3 659 aaKnown RBP11.77□□□□□ -0.53
CSMD1-208ENST00000520561 GAS2L2Q8NHY3 880 aa11.77□□□□□ -0.53
CSMD1-208ENST00000520561 RAPGEF4Q8WZA2 1011 aa11.77□□□□□ -0.53
CSMD1-208ENST00000520561 RRP7AQ9Y3A4 280 aaKnown RBP11.77□□□□□ -0.53
CSMD1-208ENST00000520561 FBXO41Q8TF61 875 aa11.76□□□□□ -0.53
CSMD1-208ENST00000520561 C8orf37Q96NL8 207 aa11.76□□□□□ -0.53
CSMD1-208ENST00000520561 CARD10Q9BWT7 1032 aa11.76□□□□□ -0.53
CSMD1-208ENST00000520561 TATP17735 454 aaPredicted RBP11.75□□□□□ -0.53
CSMD1-208ENST00000520561 RIPK4P57078 832 aa11.75□□□□□ -0.53
CSMD1-208ENST00000520561 PDE3BQ13370 1112 aa11.75□□□□□ -0.53
CSMD1-208ENST00000520561 CCDC27Q2M243 656 aa11.75□□□□□ -0.53
CSMD1-208ENST00000520561 LARP1Q6PKG0 1096 aaKnown RBP11.75□□□□□ -0.53
CSMD1-208ENST00000520561 PHACTR3Q96KR7 559 aa11.75□□□□□ -0.53
CSMD1-208ENST00000520561 MEGF6O75095 1541 aa11.75□□□□□ -0.53
CSMD1-208ENST00000520561 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.74□□□□□ -0.53
CSMD1-208ENST00000520561 WNK3Q9BYP7 1800 aa11.74□□□□□ -0.53
CSMD1-208ENST00000520561 AMOTQ4VCS5 1084 aa11.74□□□□□ -0.53
CSMD1-208ENST00000520561 NGLY1Q96IV0 654 aa11.74□□□□□ -0.53
CSMD1-208ENST00000520561 PKD1L3Q7Z443 1732 aa11.74□□□□□ -0.53
CSMD1-208ENST00000520561 OVOS2A0A0G2JMS6 1433 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms