RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 TSC1Q92574 1164 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 PGPEP1Q9NXJ5 209 aa7.95□□□□□ -1.14
CSMD3-209ENST00000519485 RTL5Q5HYW3 569 aaPredicted RBP7.94□□□□□ -1.14
CSMD3-209ENST00000519485 GPR161Q8N6U8 529 aaKnown RBP7.94□□□□□ -1.14
CSMD3-209ENST00000519485 MAGEB6P1A0A0J9YX57 407 aa7.93□□□□□ -1.14
CSMD3-209ENST00000519485 RNF225M0QZC1 329 aaPredicted RBP7.93□□□□□ -1.14
CSMD3-209ENST00000519485 CLK2P49760 499 aaKnown RBP7.93□□□□□ -1.14
CSMD3-209ENST00000519485 PPP1R26Q5T8A7 1209 aaPredicted RBP7.93□□□□□ -1.14
CSMD3-209ENST00000519485 RSPH6AQ9H0K4 717 aa7.93□□□□□ -1.14
CSMD3-209ENST00000519485 ZC3H4Q9UPT8 1303 aaKnown RBP7.93□□□□□ -1.14
CSMD3-209ENST00000519485 SLC35F4A4IF30 521 aa7.91□□□□□ -1.14
CSMD3-209ENST00000519485 DHX9Q08211 1270 aaKnown RBP7.91□□□□□ -1.14
CSMD3-209ENST00000519485 SUZ12Q15022 739 aaKnown RBP7.91□□□□□ -1.14
CSMD3-209ENST00000519485 CCDC155Q8N6L0 562 aa7.91□□□□□ -1.14
CSMD3-209ENST00000519485 FKBPLQ9UIM3 349 aa7.91□□□□□ -1.14
CSMD3-209ENST00000519485 SLURP2P0DP57 97 aa7.9□□□□□ -1.14
CSMD3-209ENST00000519485 TMEM151AQ8N4L1 468 aa7.9□□□□□ -1.14
CSMD3-209ENST00000519485 CNTNAP3BQ96NU0 1288 aa7.9□□□□□ -1.14
CSMD3-209ENST00000519485 KCTD15Q96SI1 283 aaPredicted RBP7.9□□□□□ -1.14
CSMD3-209ENST00000519485 COL25A1Q9BXS0 654 aaPredicted RBP7.9□□□□□ -1.14
CSMD3-209ENST00000519485 CNTNAP3Q9BZ76 1288 aa7.9□□□□□ -1.14
CSMD3-209ENST00000519485 ADAMTS8Q9UP79 889 aa7.9□□□□□ -1.14
CSMD3-209ENST00000519485 RASSF7Q02833 373 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 CBLBQ13191 982 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 KCTD17Q8N5Z5 321 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 ARHGAP9Q9BRR9 750 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 CARD14Q9BXL6 1004 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 GPSM3Q9Y4H4 160 aa7.89□□□□□ -1.15
CSMD3-209ENST00000519485 GDF11O95390 407 aa7.88□□□□□ -1.15
CSMD3-209ENST00000519485 CTDSPL2Q05D32 466 aa7.88□□□□□ -1.15
CSMD3-209ENST00000519485 SLC10A4Q96EP9 437 aa7.88□□□□□ -1.15
CSMD3-209ENST00000519485 ITGA6P23229 1130 aa7.87□□□□□ -1.15
CSMD3-209ENST00000519485 ZNF385CQ66K41 422 aaPredicted RBP7.87□□□□□ -1.15
CSMD3-209ENST00000519485 FIGNL2A6NMB9 653 aa7.86□□□□□ -1.15
CSMD3-209ENST00000519485 RNFT1Q5M7Z0 435 aa7.86□□□□□ -1.15
CSMD3-209ENST00000519485 ARHGEF15O94989 841 aa7.85□□□□□ -1.15
CSMD3-209ENST00000519485 INTS6LQ5JSJ4 861 aaKnown RBP7.85□□□□□ -1.15
CSMD3-209ENST00000519485 PPP2R2DQ66LE6 453 aa7.85□□□□□ -1.15
CSMD3-209ENST00000519485 ZBTB33Q86T24 672 aa7.85□□□□□ -1.15
CSMD3-209ENST00000519485 OCSTAMPQ9BR26 566 aa7.85□□□□□ -1.15
CSMD3-209ENST00000519485 CTSOP43234 321 aaPredicted RBP7.84□□□□□ -1.15
CSMD3-209ENST00000519485 PTK2Q05397 1052 aa7.84□□□□□ -1.15
CSMD3-209ENST00000519485 SV2AQ7L0J3 742 aa7.84□□□□□ -1.15
CSMD3-209ENST00000519485 RNF217Q8TC41 542 aa7.84□□□□□ -1.15
CSMD3-209ENST00000519485 SVOPQ8N4V2 548 aa7.83□□□□□ -1.16
CSMD3-209ENST00000519485 POLR3EQ9NVU0 708 aa7.83□□□□□ -1.16
CSMD3-209ENST00000519485 DNMT3AQ9Y6K1 912 aaPredicted RBP7.83□□□□□ -1.16
CSMD3-209ENST00000519485 SENP3-EIF4A1A0A087X0R7 540 aa7.82□□□□□ -1.16
CSMD3-209ENST00000519485 SKIV2LQ15477 1246 aaKnown RBP7.82□□□□□ -1.16
CSMD3-209ENST00000519485 NBPF20Q3BBV1 942 aa7.82□□□□□ -1.16
CSMD3-209ENST00000519485 LRRN4Q8WUT4 740 aa7.82□□□□□ -1.16
CSMD3-209ENST00000519485 INSM2Q96T92 566 aaPredicted RBP7.82□□□□□ -1.16
CSMD3-209ENST00000519485 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.82□□□□□ -1.16
CSMD3-209ENST00000519485 SLC24A3Q9HC58 644 aa7.82□□□□□ -1.16
CSMD3-209ENST00000519485 IGHA1P01876 353 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 NR6A1Q15406 480 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 SH3D19Q5HYK7 790 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 KANK3Q6NY19 840 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 VWA5B2Q8N398 1253 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 AGBL1Q96MI9 1066 aa7.81□□□□□ -1.16
CSMD3-209ENST00000519485 FOXK2Q01167 660 aa7.8□□□□□ -1.16
CSMD3-209ENST00000519485 RELBQ01201 579 aa7.8□□□□□ -1.16
CSMD3-209ENST00000519485 SRSF11Q05519 484 aaKnown RBP7.8□□□□□ -1.16
CSMD3-209ENST00000519485 ADAM32Q8TC27 787 aa7.8□□□□□ -1.16
CSMD3-209ENST00000519485 WHAMMQ8TF30 809 aa7.8□□□□□ -1.16
CSMD3-209ENST00000519485 ESPNB1AK53 854 aa7.79□□□□□ -1.16
CSMD3-209ENST00000519485 LILRA1O75019 489 aa7.79□□□□□ -1.16
CSMD3-209ENST00000519485 ADH1AP07327 375 aa7.79□□□□□ -1.16
CSMD3-209ENST00000519485 FBXO31Q5XUX0 539 aaPredicted RBP7.79□□□□□ -1.16
CSMD3-209ENST00000519485 TRIM52Q96A61 297 aa7.79□□□□□ -1.16
CSMD3-209ENST00000519485 POLMQ9NP87 494 aaPredicted RBP7.79□□□□□ -1.16
CSMD3-209ENST00000519485 CDC14CA4D256 554 aa7.78□□□□□ -1.16
CSMD3-209ENST00000519485 FOXD4L5Q5VV16 416 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-209ENST00000519485 KDF1Q8NAX2 398 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-209ENST00000519485 ZNF784Q8NCA9 323 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-209ENST00000519485 PNMA1Q8ND90 353 aa7.78□□□□□ -1.16
CSMD3-209ENST00000519485 SCARF2Q96GP6 870 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-209ENST00000519485 PTGIRP43119 386 aa7.77□□□□□ -1.17
CSMD3-209ENST00000519485 SEPT12Q8IYM1 358 aa7.77□□□□□ -1.17
CSMD3-209ENST00000519485 GMCL1Q96IK5 515 aa7.77□□□□□ -1.17
CSMD3-209ENST00000519485 ZNF395Q9H8N7 513 aaPredicted RBP7.77□□□□□ -1.17
CSMD3-209ENST00000519485 ADAMTS2O95450 1211 aa7.76□□□□□ -1.17
CSMD3-209ENST00000519485 TMPRSS4Q9NRS4 437 aa7.76□□□□□ -1.17
CSMD3-209ENST00000519485 ERVH48-1M5A8F1 160 aa7.75□□□□□ -1.17
CSMD3-209ENST00000519485 IRS1P35568 1242 aa7.75□□□□□ -1.17
CSMD3-209ENST00000519485 ADD1P35611 737 aaKnown RBP7.75□□□□□ -1.17
CSMD3-209ENST00000519485 RNF144AP50876 292 aaPredicted RBP7.75□□□□□ -1.17
CSMD3-209ENST00000519485 MARSP56192 900 aaKnown RBP7.75□□□□□ -1.17
CSMD3-209ENST00000519485 GAS6Q14393 721 aa7.74□□□□□ -1.17
CSMD3-209ENST00000519485 LYPD4Q6UWN0 246 aa7.74□□□□□ -1.17
CSMD3-209ENST00000519485 LYSMD3Q7Z3D4 306 aa7.74□□□□□ -1.17
CSMD3-209ENST00000519485 PROCA1Q8NCQ7 364 aaPredicted RBP7.74□□□□□ -1.17
CSMD3-209ENST00000519485 DDRGK1Q96HY6 314 aa7.74□□□□□ -1.17
CSMD3-209ENST00000519485 CCDC125Q86Z20 511 aa7.73□□□□□ -1.17
CSMD3-209ENST00000519485 CELA2BP08218 269 aaPredicted RBP7.72□□□□□ -1.17
CSMD3-209ENST00000519485 GPC1P35052 558 aa7.72□□□□□ -1.17
CSMD3-209ENST00000519485 MAP3K10Q02779 954 aa7.72□□□□□ -1.17
CSMD3-209ENST00000519485 DZIP3Q86Y13 1208 aaKnown RBP7.72□□□□□ -1.17
CSMD3-209ENST00000519485 EPS8L1Q8TE68 723 aa7.72□□□□□ -1.17
CSMD3-209ENST00000519485 ENAMQ9NRM1 1142 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms