RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
CSMD3-209ENST00000519485 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
CSMD3-209ENST00000519485 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
CSMD3-209ENST00000519485 PHF23Q9BUL5 403 aaPredicted RBP20.14■□□□□ 0.81
CSMD3-209ENST00000519485 FOXD1Q16676 465 aa19.04■□□□□ 0.64
CSMD3-209ENST00000519485 PLPPR3Q6T4P5 718 aa18.06■□□□□ 0.48
CSMD3-209ENST00000519485 MSH5O43196 834 aa17.91■□□□□ 0.46
CSMD3-209ENST00000519485 PIAS4Q8N2W9 510 aaPredicted RBP17.74■□□□□ 0.43
CSMD3-209ENST00000519485 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
CSMD3-209ENST00000519485 ADRA2BP18089 450 aa17.61■□□□□ 0.41
CSMD3-209ENST00000519485 POTEDQ86YR6 584 aa17.6■□□□□ 0.41
CSMD3-209ENST00000519485 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
CSMD3-209ENST00000519485 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
CSMD3-209ENST00000519485 MAPK8IP2Q13387 824 aaPredicted RBP16.19■□□□□ 0.18
CSMD3-209ENST00000519485 PPP4R3CPQ6ZMV5 832 aa15.77■□□□□ 0.12
CSMD3-209ENST00000519485 HOXD11P31277 338 aaPredicted RBP15.61■□□□□ 0.09
CSMD3-209ENST00000519485 CNKSR2Q8WXI2 1034 aa15.55■□□□□ 0.08
CSMD3-209ENST00000519485 RNF216Q9NWF9 866 aaPredicted RBP15.45■□□□□ 0.06
CSMD3-209ENST00000519485 DCAF8L1A6NGE4 600 aa15.39■□□□□ 0.05
CSMD3-209ENST00000519485 CACNB1Q02641 598 aaPredicted RBP15.34■□□□□ 0.05
CSMD3-209ENST00000519485 RNF39Q9H2S5 420 aa15.27■□□□□ 0.04
CSMD3-209ENST00000519485 DNAJC5BQ9UF47 199 aa15.2■□□□□ 0.02
CSMD3-209ENST00000519485 NCBP3Q53F19 620 aaKnown RBP15.18■□□□□ 0.02
CSMD3-209ENST00000519485 C1QBPQ07021 282 aaKnown RBP15.06■□□□□ 0
CSMD3-209ENST00000519485 NPM3O75607 178 aaKnown RBP14.93□□□□□ -0.02
CSMD3-209ENST00000519485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.76□□□□□ -0.05
CSMD3-209ENST00000519485 KCNA4P22459 653 aa14.52□□□□□ -0.09
CSMD3-209ENST00000519485 U3KPZ7 1027 aaPredicted RBP14.49□□□□□ -0.09
CSMD3-209ENST00000519485 SLC4A2P04920 1241 aa14.29□□□□□ -0.12
CSMD3-209ENST00000519485 SPINK5Q9NQ38 1064 aaPredicted RBP14.26□□□□□ -0.13
CSMD3-209ENST00000519485 DSG3P32926 999 aa14.24□□□□□ -0.13
CSMD3-209ENST00000519485 CAPN15O75808 1086 aa14.22□□□□□ -0.13
CSMD3-209ENST00000519485 APLP2Q06481 763 aa14.14□□□□□ -0.15
CSMD3-209ENST00000519485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
CSMD3-209ENST00000519485 HNRNPUL2Q1KMD3 747 aaKnown RBP14.1□□□□□ -0.15
CSMD3-209ENST00000519485 ZNF219Q9P2Y4 722 aaPredicted RBP14.04□□□□□ -0.16
CSMD3-209ENST00000519485 SAMD1Q6SPF0 538 aaPredicted RBP13.99□□□□□ -0.17
CSMD3-209ENST00000519485 TRHP20396 242 aaPredicted RBP13.96□□□□□ -0.17
CSMD3-209ENST00000519485 ABCB7O75027 752 aa13.86□□□□□ -0.19
CSMD3-209ENST00000519485 MYCNP04198 464 aaPredicted RBP13.85□□□□□ -0.19
CSMD3-209ENST00000519485 POTEHQ6S545 545 aa13.77□□□□□ -0.21
CSMD3-209ENST00000519485 SLC4A1APQ9BWU0 796 aaKnown RBP13.69□□□□□ -0.22
CSMD3-209ENST00000519485 RBM42Q9BTD8 480 aaKnown RBP13.63□□□□□ -0.23
CSMD3-209ENST00000519485 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
CSMD3-209ENST00000519485 POLA2Q14181 598 aa13.61□□□□□ -0.23
CSMD3-209ENST00000519485 ATF5Q9Y2D1 282 aaPredicted RBP13.46□□□□□ -0.25
CSMD3-209ENST00000519485 ZBTB12Q9Y330 459 aaPredicted RBP13.41□□□□□ -0.26
CSMD3-209ENST00000519485 ZBTB22O15209 634 aa13.35□□□□□ -0.27
CSMD3-209ENST00000519485 CHRDL2Q6WN34 429 aa13.32□□□□□ -0.28
CSMD3-209ENST00000519485 ATXN8OSP0DMR3 200 aa13.3□□□□□ -0.28
CSMD3-209ENST00000519485 AKT1S1Q96B36 256 aa13.29□□□□□ -0.28
CSMD3-209ENST00000519485 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
CSMD3-209ENST00000519485 REM2Q8IYK8 340 aaPredicted RBP13.12□□□□□ -0.31
CSMD3-209ENST00000519485 FBLN2P98095 1184 aa12.98□□□□□ -0.33
CSMD3-209ENST00000519485 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
CSMD3-209ENST00000519485 SPDYE2BA6NHP3 402 aa12.97□□□□□ -0.33
CSMD3-209ENST00000519485 PITPNM1O00562 1244 aa12.97□□□□□ -0.33
CSMD3-209ENST00000519485 SPDYE6P0CI01 402 aa12.97□□□□□ -0.33
CSMD3-209ENST00000519485 SPDYE2Q495Y8 402 aa12.97□□□□□ -0.33
CSMD3-209ENST00000519485 FXR2P51116 673 aaKnown RBP eCLIP12.93□□□□□ -0.34
CSMD3-209ENST00000519485 SP7Q8TDD2 431 aaPredicted RBP12.88□□□□□ -0.35
CSMD3-209ENST00000519485 MKRN4PQ13434 485 aaPredicted RBP12.87□□□□□ -0.35
CSMD3-209ENST00000519485 SSUH2Q9Y2M2 353 aa12.8□□□□□ -0.36
CSMD3-209ENST00000519485 SPDYE1Q8NFV5 336 aaPredicted RBP12.75□□□□□ -0.37
CSMD3-209ENST00000519485 HAX1O00165 279 aa12.73□□□□□ -0.37
CSMD3-209ENST00000519485 ZNF692Q9BU19 519 aaPredicted RBP12.73□□□□□ -0.37
CSMD3-209ENST00000519485 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
CSMD3-209ENST00000519485 CLEC11AQ9Y240 323 aa12.63□□□□□ -0.39
CSMD3-209ENST00000519485 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
CSMD3-209ENST00000519485 EVX2Q03828 476 aa12.56□□□□□ -0.4
CSMD3-209ENST00000519485 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
CSMD3-209ENST00000519485 C19orf67A6NJJ6 358 aa12.51□□□□□ -0.41
CSMD3-209ENST00000519485 PRR29P0C7W0 189 aa12.46□□□□□ -0.41
CSMD3-209ENST00000519485 CHADLQ6NUI6 762 aa12.4□□□□□ -0.42
CSMD3-209ENST00000519485 EHMT2Q96KQ7 1210 aa12.32□□□□□ -0.44
CSMD3-209ENST00000519485 GABBR2O75899 941 aa12.31□□□□□ -0.44
CSMD3-209ENST00000519485 FARP1Q9Y4F1 1045 aaPredicted RBP12.28□□□□□ -0.44
CSMD3-209ENST00000519485 STAG3Q9UJ98 1225 aa12.25□□□□□ -0.45
CSMD3-209ENST00000519485 CLCN6P51797 869 aa12.23□□□□□ -0.45
CSMD3-209ENST00000519485 CD44P16070 742 aaKnown RBP12.21□□□□□ -0.45
CSMD3-209ENST00000519485 SPDYE4A6NLX3 237 aa12.19□□□□□ -0.46
CSMD3-209ENST00000519485 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
CSMD3-209ENST00000519485 ZNF579Q8NAF0 562 aaKnown RBP12.09□□□□□ -0.47
CSMD3-209ENST00000519485 POTEIP0CG38 1075 aa12.05□□□□□ -0.48
CSMD3-209ENST00000519485 LHX8Q68G74 356 aa12.05□□□□□ -0.48
CSMD3-209ENST00000519485 PROM2Q8N271 834 aa12□□□□□ -0.49
CSMD3-209ENST00000519485 ZRANB1Q9UGI0 708 aa12□□□□□ -0.49
CSMD3-209ENST00000519485 MNX1P50219 401 aaPredicted RBP11.97□□□□□ -0.49
CSMD3-209ENST00000519485 NPM1P06748 294 aaKnown RBP eCLIP11.94□□□□□ -0.5
CSMD3-209ENST00000519485 DCBLD2Q96PD2 775 aa11.93□□□□□ -0.5
CSMD3-209ENST00000519485 PAK3O75914 559 aaPredicted RBP11.92□□□□□ -0.5
CSMD3-209ENST00000519485 GALR2O43603 387 aaPredicted RBP11.87□□□□□ -0.51
CSMD3-209ENST00000519485 PHF12Q96QT6 1004 aa11.81□□□□□ -0.52
CSMD3-209ENST00000519485 ASTLQ6HA08 431 aaPredicted RBP11.7□□□□□ -0.54
CSMD3-209ENST00000519485 MS4A3Q96HJ5 214 aa11.68□□□□□ -0.54
CSMD3-209ENST00000519485 CCDC61Q9Y6R9 512 aa11.68□□□□□ -0.54
CSMD3-209ENST00000519485 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
CSMD3-209ENST00000519485 PLSCR2Q9NRY7 297 aa11.66□□□□□ -0.54
CSMD3-209ENST00000519485 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
CSMD3-209ENST00000519485 POTEB2H3BUK9 544 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms