RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 PARP4Q9UKK3 1724 aaKnown RBP41.65■■■■■ 4.26
SYNPO-203ENST00000518872 ZBTB7CA1YPR0 619 aa41.64■■■■■ 4.26
SYNPO-203ENST00000518872 ZRANB1Q9UGI0 708 aa41.63■■■■■ 4.25
SYNPO-203ENST00000518872 AXIN2Q9Y2T1 843 aa41.63■■■■■ 4.25
SYNPO-203ENST00000518872 OVOS2A0A0J9YW53 1432 aa41.62■■■■■ 4.25
SYNPO-203ENST00000518872 OVOS2Q6IE36 1432 aa41.62■■■■■ 4.25
SYNPO-203ENST00000518872 RGPD1P0DJD0 1748 aa41.62■■■■■ 4.25
SYNPO-203ENST00000518872 CCER1Q8TC90 406 aaPredicted RBP41.62■■■■■ 4.25
SYNPO-203ENST00000518872 ANKRD36BQ8N2N9 1353 aa41.62■■■■■ 4.25
SYNPO-203ENST00000518872 SF3B2Q13435 895 aaKnown RBP41.61■■■■■ 4.25
SYNPO-203ENST00000518872 WDR17Q8IZU2 1322 aa41.61■■■■■ 4.25
SYNPO-203ENST00000518872 CDCA8Q53HL2 280 aa41.6■■■■■ 4.25
SYNPO-203ENST00000518872 LTN1O94822 1766 aa41.58■■■■■ 4.25
SYNPO-203ENST00000518872 SOX12O15370 315 aa41.58■■■■■ 4.25
SYNPO-203ENST00000518872 WNK3Q9BYP7 1800 aa41.57■■■■■ 4.24
SYNPO-203ENST00000518872 TOM1L2Q6ZVM7 507 aa41.53■■■■■ 4.24
SYNPO-203ENST00000518872 FAM182BQ5T319 152 aa41.52■■■■■ 4.24
SYNPO-203ENST00000518872 FAM196AQ6ZSG2 479 aa41.52■■■■■ 4.24
SYNPO-203ENST00000518872 TNS1Q9HBL0 1735 aaKnown RBP41.52■■■■■ 4.24
SYNPO-203ENST00000518872 DEFB132Q7Z7B7 95 aa41.51■■■■■ 4.24
SYNPO-203ENST00000518872 PDE3BQ13370 1112 aa41.5■■■■■ 4.23
SYNPO-203ENST00000518872 DISP2A7MBM2 1401 aa41.49■■■■■ 4.23
SYNPO-203ENST00000518872 LRRC37A3O60309 1634 aa41.48■■■■■ 4.23
SYNPO-203ENST00000518872 CARD10Q9BWT7 1032 aa41.48■■■■■ 4.23
SYNPO-203ENST00000518872 MYOM1P52179 1685 aa41.48■■■■■ 4.23
SYNPO-203ENST00000518872 BAG6P46379 1132 aa41.47■■■■■ 4.23
SYNPO-203ENST00000518872 CDCA7Q9BWT1 371 aaPredicted RBP41.45■■■■■ 4.23
SYNPO-203ENST00000518872 CCDC7Q96M83 1385 aa41.42■■■■■ 4.22
SYNPO-203ENST00000518872 C11orf95C9JLR9 678 aaPredicted RBP41.42■■■■■ 4.22
SYNPO-203ENST00000518872 COG3Q96JB2 828 aa41.42■■■■■ 4.22
SYNPO-203ENST00000518872 ERBB3P21860 1342 aa41.42■■■■■ 4.22
SYNPO-203ENST00000518872 CSB-PGBD3P0DP91 1061 aa41.41■■■■■ 4.22
SYNPO-203ENST00000518872 PEAK1Q9H792 1746 aa41.41■■■■■ 4.22
SYNPO-203ENST00000518872 DDB1Q16531 1140 aa41.36■■■■■ 4.21
SYNPO-203ENST00000518872 KIF20BQ96Q89 1820 aa41.36■■■■■ 4.21
SYNPO-203ENST00000518872 OVOS2A0A0G2JMS6 1433 aa41.35■■■■■ 4.21
SYNPO-203ENST00000518872 FYB1O15117 783 aa41.34■■■■■ 4.21
SYNPO-203ENST00000518872 TRIM37O94972 964 aa41.34■■■■■ 4.21
SYNPO-203ENST00000518872 FAM208AQ9UK61 1670 aaKnown RBP41.33■■■■■ 4.21
SYNPO-203ENST00000518872 EIF4G2P78344 907 aaKnown RBP eCLIP41.33■■■■■ 4.21
SYNPO-203ENST00000518872 IP6K1Q92551 441 aa41.33■■■■■ 4.21
SYNPO-203ENST00000518872 SBF2Q86WG5 1849 aa41.31■■■■■ 4.2
SYNPO-203ENST00000518872 BCL9O00512 1426 aa41.29■■■■■ 4.2
SYNPO-203ENST00000518872 EN1Q05925 392 aaPredicted RBP41.29■■■■■ 4.2
SYNPO-203ENST00000518872 ANKRD24Q8TF21 1146 aa41.29■■■■■ 4.2
SYNPO-203ENST00000518872 PARD3Q8TEW0 1356 aa41.28■■■■■ 4.2
SYNPO-203ENST00000518872 MAP3K19Q56UN5 1328 aa41.27■■■■■ 4.2
SYNPO-203ENST00000518872 CARD14Q9BXL6 1004 aa41.25■■■■■ 4.19
SYNPO-203ENST00000518872 GGNBP2Q9H3C7 697 aa41.25■■■■■ 4.19
SYNPO-203ENST00000518872 RTL1A6NKG5 1358 aa41.25■■■■■ 4.19
SYNPO-203ENST00000518872 HSPA5P11021 654 aaKnown RBP41.24■■■■■ 4.19
SYNPO-203ENST00000518872 NLRP2Q9NX02 1062 aa41.24■■■■■ 4.19
SYNPO-203ENST00000518872 TNS2Q63HR2 1409 aa41.24■■■■■ 4.19
SYNPO-203ENST00000518872 CAMKK2Q96RR4 588 aa41.23■■■■■ 4.19
SYNPO-203ENST00000518872 NSD3Q9BZ95 1437 aa41.22■■■■■ 4.19
SYNPO-203ENST00000518872 APBA3O96018 575 aa41.21■■■■■ 4.19
SYNPO-203ENST00000518872 HOXC9P31274 260 aa41.21■■■■■ 4.19
SYNPO-203ENST00000518872 RREB1Q92766 1687 aa41.2■■■■■ 4.19
SYNPO-203ENST00000518872 EXOC5O00471 708 aa41.2■■■■■ 4.19
SYNPO-203ENST00000518872 MARCH10Q8NA82 808 aaPredicted RBP41.2■■■■■ 4.19
SYNPO-203ENST00000518872 RGPD3A6NKT7 1758 aaPredicted RBP41.17■■■■■ 4.18
SYNPO-203ENST00000518872 RGPD4Q7Z3J3 1758 aa41.17■■■■■ 4.18
SYNPO-203ENST00000518872 FBLN1P23142 703 aa41.17■■■■■ 4.18
SYNPO-203ENST00000518872 EZH2Q15910 746 aaKnown RBP41.17■■■■■ 4.18
SYNPO-203ENST00000518872 IL2RBP14784 551 aa41.16■■■■■ 4.18
SYNPO-203ENST00000518872 AMPHP49418 695 aa41.16■■■■■ 4.18
SYNPO-203ENST00000518872 KIF24Q5T7B8 1368 aa41.15■■■■■ 4.18
SYNPO-203ENST00000518872 SRCAPQ6ZRS2 3230 aa41.12■■■■■ 4.17
SYNPO-203ENST00000518872 RRS1Q15050 365 aaKnown RBP41.11■■■■■ 4.17
SYNPO-203ENST00000518872 BCL11BQ9C0K0 894 aaPredicted RBP41.1■■■■■ 4.17
SYNPO-203ENST00000518872 NUP188Q5SRE5 1749 aa41.1■■■■■ 4.17
SYNPO-203ENST00000518872 RGPD2P0DJD1 1756 aa41.09■■■■■ 4.17
SYNPO-203ENST00000518872 CGNL1Q0VF96 1302 aa41.09■■■■■ 4.17
SYNPO-203ENST00000518872 LTV1Q96GA3 475 aaPredicted RBP41.07■■■■■ 4.17
SYNPO-203ENST00000518872 ANKRD26Q9UPS8 1709 aa41.06■■■■■ 4.16
SYNPO-203ENST00000518872 FLT4P35916 1363 aa41.05■■■■■ 4.16
SYNPO-203ENST00000518872 PLSCR1O15162 318 aa41.05■■■■■ 4.16
SYNPO-203ENST00000518872 INSRP06213 1382 aa41.04■■■■■ 4.16
SYNPO-203ENST00000518872 POLR3GLQ9BT43 218 aa41.03■■■■■ 4.16
SYNPO-203ENST00000518872 NHSQ6T4R5 1651 aa41.02■■■■■ 4.16
SYNPO-203ENST00000518872 SMG6Q86US8 1419 aaKnown RBP41.01■■■■■ 4.16
SYNPO-203ENST00000518872 MAP2P11137 1827 aaKnown RBP40.99■■■■■ 4.15
SYNPO-203ENST00000518872 LRP5O75197 1615 aa40.99■■■■■ 4.15
SYNPO-203ENST00000518872 PSDA5PKW4 1024 aaPredicted RBP40.97■■■■■ 4.15
SYNPO-203ENST00000518872 PTF1AQ7RTS3 328 aa40.97■■■■■ 4.15
SYNPO-203ENST00000518872 HSP90AB2PQ58FF8 381 aa40.95■■■■■ 4.15
SYNPO-203ENST00000518872 R3HDM1Q15032 1099 aaKnown RBP40.93■■■■■ 4.14
SYNPO-203ENST00000518872 NBPF6Q5VWK0 638 aa40.93■■■■■ 4.14
SYNPO-203ENST00000518872 NBPF4Q96M43 638 aa40.93■■■■■ 4.14
SYNPO-203ENST00000518872 PANK3Q9H999 370 aa40.93■■■■■ 4.14
SYNPO-203ENST00000518872 SHANK3Q9BYB0 1731 aa40.93■■■■■ 4.14
SYNPO-203ENST00000518872 KAT6BQ8WYB5 2073 aa40.91■■■■■ 4.14
SYNPO-203ENST00000518872 EMILIN1Q9Y6C2 1016 aa40.91■■■■■ 4.14
SYNPO-203ENST00000518872 MEGF6O75095 1541 aa40.91■■■■■ 4.14
SYNPO-203ENST00000518872 NSD2O96028 1365 aa40.9■■■■■ 4.14
SYNPO-203ENST00000518872 NBPF14Q5TI25 921 aa40.89■■■■■ 4.14
SYNPO-203ENST00000518872 WASHC2AQ641Q2 1341 aa40.87■■■■■ 4.13
SYNPO-203ENST00000518872 KCNQ2O43526 872 aa40.86■■■■■ 4.13
SYNPO-203ENST00000518872 BTAF1O14981 1849 aa40.85■■■■■ 4.13
SYNPO-203ENST00000518872 NCAPD2Q15021 1401 aa40.84■■■■■ 4.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms