RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 AXIN2Q9Y2T1 843 aa19.5■□□□□ 0.71
NUP54-216ENST00000514901 LMO7Q8WWI1 1683 aa19.49■□□□□ 0.71
NUP54-216ENST00000514901 AMPHP49418 695 aa19.49■□□□□ 0.71
NUP54-216ENST00000514901 MAP3K19Q56UN5 1328 aa19.49■□□□□ 0.71
NUP54-216ENST00000514901 SPATA31A5Q5VU36 1347 aa19.49■□□□□ 0.71
NUP54-216ENST00000514901 SPATA31A7Q8IWB4 1347 aa19.49■□□□□ 0.71
NUP54-216ENST00000514901 CDK12Q9NYV4 1490 aaPredicted RBP19.48■□□□□ 0.71
NUP54-216ENST00000514901 NRAPQ86VF7 1730 aa19.48■□□□□ 0.71
NUP54-216ENST00000514901 COL18A1P39060 1754 aa19.48■□□□□ 0.71
NUP54-216ENST00000514901 LARP1Q6PKG0 1096 aaKnown RBP19.47■□□□□ 0.71
NUP54-216ENST00000514901 MORC1Q86VD1 984 aa19.47■□□□□ 0.71
NUP54-216ENST00000514901 COL5A2P05997 1499 aaPredicted RBP19.47■□□□□ 0.71
NUP54-216ENST00000514901 KIF24Q5T7B8 1368 aa19.46■□□□□ 0.71
NUP54-216ENST00000514901 NPC1L1Q9UHC9 1359 aa19.46■□□□□ 0.71
NUP54-216ENST00000514901 ONECUT3O60422 494 aaPredicted RBP19.46■□□□□ 0.71
NUP54-216ENST00000514901 FBLN1P23142 703 aa19.46■□□□□ 0.71
NUP54-216ENST00000514901 RRS1Q15050 365 aaKnown RBP19.46■□□□□ 0.71
NUP54-216ENST00000514901 SPATA31A1Q5TZJ5 1347 aa19.46■□□□□ 0.71
NUP54-216ENST00000514901 RTL1A6NKG5 1358 aa19.45■□□□□ 0.7
NUP54-216ENST00000514901 BLMP54132 1417 aaPredicted RBP19.45■□□□□ 0.7
NUP54-216ENST00000514901 CSB-PGBD3P0DP91 1061 aa19.45■□□□□ 0.7
NUP54-216ENST00000514901 THRAP3Q9Y2W1 955 aaKnown RBP19.45■□□□□ 0.7
NUP54-216ENST00000514901 WDR17Q8IZU2 1322 aa19.45■□□□□ 0.7
NUP54-216ENST00000514901 LTN1O94822 1766 aa19.44■□□□□ 0.7
NUP54-216ENST00000514901 HOXC9P31274 260 aa19.44■□□□□ 0.7
NUP54-216ENST00000514901 TOM1L2Q6ZVM7 507 aa19.44■□□□□ 0.7
NUP54-216ENST00000514901 TCP11L2Q8N4U5 519 aa19.43■□□□□ 0.7
NUP54-216ENST00000514901 CRB1P82279 1406 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 ANKRD26Q9UPS8 1709 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 BARGINQ6ZT62 677 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 ANKRD24Q8TF21 1146 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 CARD10Q9BWT7 1032 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 ERBB3P21860 1342 aa19.42■□□□□ 0.7
NUP54-216ENST00000514901 GLI3P10071 1580 aa19.41■□□□□ 0.7
NUP54-216ENST00000514901 TNNT2P45379 298 aaPredicted RBP19.41■□□□□ 0.7
NUP54-216ENST00000514901 CC2D1BQ5T0F9 858 aaKnown RBP19.41■□□□□ 0.7
NUP54-216ENST00000514901 POLKQ9UBT6 870 aa19.41■□□□□ 0.7
NUP54-216ENST00000514901 FLT4P35916 1363 aa19.41■□□□□ 0.7
NUP54-216ENST00000514901 FAM98CQ17RN3 349 aaKnown RBP19.4■□□□□ 0.7
NUP54-216ENST00000514901 USP35Q9P2H5 1018 aa19.4■□□□□ 0.7
NUP54-216ENST00000514901 RGPD5Q99666 1765 aa19.39■□□□□ 0.7
NUP54-216ENST00000514901 PPM1GO15355 546 aaPredicted RBP19.39■□□□□ 0.69
NUP54-216ENST00000514901 SEPT12Q8IYM1 358 aa19.39■□□□□ 0.69
NUP54-216ENST00000514901 EMILIN1Q9Y6C2 1016 aa19.39■□□□□ 0.69
NUP54-216ENST00000514901 INSRP06213 1382 aa19.39■□□□□ 0.69
NUP54-216ENST00000514901 MAP2P11137 1827 aaKnown RBP19.39■□□□□ 0.69
NUP54-216ENST00000514901 ZNF316A6NFI3 1004 aaPredicted RBP19.38■□□□□ 0.69
NUP54-216ENST00000514901 RGS12O14924 1447 aa19.38■□□□□ 0.69
NUP54-216ENST00000514901 DDX10Q13206 875 aaKnown RBP19.38■□□□□ 0.69
NUP54-216ENST00000514901 CDCA7Q9BWT1 371 aaPredicted RBP19.38■□□□□ 0.69
NUP54-216ENST00000514901 NLRP2Q9NX02 1062 aa19.38■□□□□ 0.69
NUP54-216ENST00000514901 HSP90AB2PQ58FF8 381 aa19.37■□□□□ 0.69
NUP54-216ENST00000514901 LTV1Q96GA3 475 aaPredicted RBP19.37■□□□□ 0.69
NUP54-216ENST00000514901 SMG6Q86US8 1419 aaKnown RBP19.36■□□□□ 0.69
NUP54-216ENST00000514901 A0A0G2JS52 829 aa19.36■□□□□ 0.69
NUP54-216ENST00000514901 MYT1Q01538 1121 aa19.36■□□□□ 0.69
NUP54-216ENST00000514901 KRT27Q7Z3Y8 459 aa19.32■□□□□ 0.68
NUP54-216ENST00000514901 PEAK1Q9H792 1746 aa19.31■□□□□ 0.68
NUP54-216ENST00000514901 SOCS7O14512 581 aa19.31■□□□□ 0.68
NUP54-216ENST00000514901 MTHFSP49914 203 aa19.31■□□□□ 0.68
NUP54-216ENST00000514901 CNGB1Q14028 1251 aaPredicted RBP19.31■□□□□ 0.68
NUP54-216ENST00000514901 FAM208AQ9UK61 1670 aaKnown RBP19.3■□□□□ 0.68
NUP54-216ENST00000514901 IL2RBP14784 551 aa19.29■□□□□ 0.68
NUP54-216ENST00000514901 PDE3BQ13370 1112 aa19.29■□□□□ 0.68
NUP54-216ENST00000514901 NBPF6Q5VWK0 638 aa19.29■□□□□ 0.68
NUP54-216ENST00000514901 NBPF4Q96M43 638 aa19.29■□□□□ 0.68
NUP54-216ENST00000514901 THSD7AQ9UPZ6 1657 aa19.29■□□□□ 0.68
NUP54-216ENST00000514901 DDB1Q16531 1140 aa19.28■□□□□ 0.68
NUP54-216ENST00000514901 EXOC5O00471 708 aa19.27■□□□□ 0.68
NUP54-216ENST00000514901 EIF4A2Q14240 407 aaKnown RBP19.27■□□□□ 0.68
NUP54-216ENST00000514901 DISP2A7MBM2 1401 aa19.26■□□□□ 0.67
NUP54-216ENST00000514901 RALBP1Q15311 655 aa19.26■□□□□ 0.67
NUP54-216ENST00000514901 EYA1Q99502 592 aa19.25■□□□□ 0.67
NUP54-216ENST00000514901 BRWD3Q6RI45 1802 aa19.25■□□□□ 0.67
NUP54-216ENST00000514901 PPP2R1AP30153 589 aa19.24■□□□□ 0.67
NUP54-216ENST00000514901 RAPGEF4Q8WZA2 1011 aa19.24■□□□□ 0.67
NUP54-216ENST00000514901 PARP4Q9UKK3 1724 aaKnown RBP19.23■□□□□ 0.67
NUP54-216ENST00000514901 PARD3Q8TEW0 1356 aa19.23■□□□□ 0.67
NUP54-216ENST00000514901 FAM196AQ6ZSG2 479 aa19.23■□□□□ 0.67
NUP54-216ENST00000514901 CFAP53Q96M91 514 aa19.23■□□□□ 0.67
NUP54-216ENST00000514901 DIAPH1O60610 1272 aaKnown RBP19.22■□□□□ 0.67
NUP54-216ENST00000514901 TATP17735 454 aaPredicted RBP19.22■□□□□ 0.67
NUP54-216ENST00000514901 IL13P35225 146 aa19.22■□□□□ 0.67
NUP54-216ENST00000514901 USHBP1Q8N6Y0 703 aa19.22■□□□□ 0.67
NUP54-216ENST00000514901 CCDC125Q86Z20 511 aa19.21■□□□□ 0.67
NUP54-216ENST00000514901 RGPD2P0DJD1 1756 aa19.21■□□□□ 0.67
NUP54-216ENST00000514901 NCAPD2Q15021 1401 aa19.2■□□□□ 0.66
NUP54-216ENST00000514901 UPF1Q92900 1129 aaKnown RBP eCLIP19.2■□□□□ 0.66
NUP54-216ENST00000514901 WNK3Q9BYP7 1800 aa19.2■□□□□ 0.66
NUP54-216ENST00000514901 IGSF1Q8N6C5 1336 aa19.2■□□□□ 0.66
NUP54-216ENST00000514901 ZCRB1Q8TBF4 217 aaKnown RBP19.19■□□□□ 0.66
NUP54-216ENST00000514901 EP400Q96L91 3159 aa19.18■□□□□ 0.66
NUP54-216ENST00000514901 TNS2Q63HR2 1409 aa19.18■□□□□ 0.66
NUP54-216ENST00000514901 MARCH10Q8NA82 808 aaPredicted RBP19.18■□□□□ 0.66
NUP54-216ENST00000514901 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.17■□□□□ 0.66
NUP54-216ENST00000514901 PLEKHG2Q9H7P9 1386 aa19.17■□□□□ 0.66
NUP54-216ENST00000514901 OVOS2A0A0G2JMS6 1433 aa19.17■□□□□ 0.66
NUP54-216ENST00000514901 LRRC37A3O60309 1634 aa19.16■□□□□ 0.66
NUP54-216ENST00000514901 FAM182BQ5T319 152 aa19.16■□□□□ 0.66
NUP54-216ENST00000514901 NUDCQ9Y266 331 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms