RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 RGPD4Q7Z3J3 1758 aa29.51■■■□□ 2.31
SQSTM1-215ENST00000514093 CASZ1Q86V15 1759 aa29.51■■■□□ 2.31
SQSTM1-215ENST00000514093 ATF5Q9Y2D1 282 aaPredicted RBP29.5■■■□□ 2.31
SQSTM1-215ENST00000514093 USP6P35125 1406 aa29.5■■■□□ 2.31
SQSTM1-215ENST00000514093 KIAA1210Q9ULL0 1709 aa29.5■■■□□ 2.31
SQSTM1-215ENST00000514093 BRD4O60885 1362 aaPredicted RBP29.49■■■□□ 2.31
SQSTM1-215ENST00000514093 SLIT3O75094 1523 aa29.48■■■□□ 2.31
SQSTM1-215ENST00000514093 WDR17Q8IZU2 1322 aa29.47■■■□□ 2.31
SQSTM1-215ENST00000514093 PTGER2P43116 358 aa29.46■■■□□ 2.31
SQSTM1-215ENST00000514093 COL18A1P39060 1754 aa29.46■■■□□ 2.31
SQSTM1-215ENST00000514093 SOX12O15370 315 aa29.45■■■□□ 2.31
SQSTM1-215ENST00000514093 TXNRD1Q16881 649 aa29.43■■■□□ 2.3
SQSTM1-215ENST00000514093 MYOM1P52179 1685 aa29.43■■■□□ 2.3
SQSTM1-215ENST00000514093 CSB-PGBD3P0DP91 1061 aa29.42■■■□□ 2.3
SQSTM1-215ENST00000514093 STK32BQ9NY57 414 aa29.42■■■□□ 2.3
SQSTM1-215ENST00000514093 PIK3C2AO00443 1686 aa29.41■■■□□ 2.3
SQSTM1-215ENST00000514093 CDCA7Q9BWT1 371 aaPredicted RBP29.41■■■□□ 2.3
SQSTM1-215ENST00000514093 QRICH2Q9H0J4 1663 aa29.4■■■□□ 2.3
SQSTM1-215ENST00000514093 ARHGEF25Q86VW2 580 aa29.4■■■□□ 2.3
SQSTM1-215ENST00000514093 ZNF784Q8NCA9 323 aaPredicted RBP29.4■■■□□ 2.3
SQSTM1-215ENST00000514093 WNK3Q9BYP7 1800 aa29.4■■■□□ 2.3
SQSTM1-215ENST00000514093 CPSF1Q10570 1443 aaKnown RBP29.39■■■□□ 2.3
SQSTM1-215ENST00000514093 SLC15A2Q16348 729 aa29.39■■■□□ 2.3
SQSTM1-215ENST00000514093 CARD10Q9BWT7 1032 aa29.39■■■□□ 2.3
SQSTM1-215ENST00000514093 FHDC1Q9C0D6 1143 aaPredicted RBP29.39■■■□□ 2.3
SQSTM1-215ENST00000514093 AKAP12Q02952 1782 aa29.39■■■□□ 2.29
SQSTM1-215ENST00000514093 BCL9O00512 1426 aa29.38■■■□□ 2.29
SQSTM1-215ENST00000514093 EXOC5O00471 708 aa29.38■■■□□ 2.29
SQSTM1-215ENST00000514093 SYT17Q9BSW7 474 aa29.38■■■□□ 2.29
SQSTM1-215ENST00000514093 RGPD5Q99666 1765 aa29.37■■■□□ 2.29
SQSTM1-215ENST00000514093 UTRNP46939 3433 aa29.37■■■□□ 2.29
SQSTM1-215ENST00000514093 TTC21BQ7Z4L5 1316 aa29.36■■■□□ 2.29
SQSTM1-215ENST00000514093 KCNH5Q8NCM2 988 aa29.34■■■□□ 2.29
SQSTM1-215ENST00000514093 EVC2Q86UK5 1308 aa29.32■■■□□ 2.28
SQSTM1-215ENST00000514093 ACSBG1Q96GR2 724 aa29.32■■■□□ 2.28
SQSTM1-215ENST00000514093 MTFR1LQ9H019 292 aa29.32■■■□□ 2.28
SQSTM1-215ENST00000514093 SGIP1Q9BQI5 828 aa29.3■■■□□ 2.28
SQSTM1-215ENST00000514093 ZNF692Q9BU19 519 aaPredicted RBP29.3■■■□□ 2.28
SQSTM1-215ENST00000514093 CCDC7Q96M83 1385 aa29.26■■■□□ 2.27
SQSTM1-215ENST00000514093 ARXQ96QS3 562 aa29.25■■■□□ 2.27
SQSTM1-215ENST00000514093 TTC21AQ8NDW8 1320 aa29.24■■■□□ 2.27
SQSTM1-215ENST00000514093 TNS2Q63HR2 1409 aa29.24■■■□□ 2.27
SQSTM1-215ENST00000514093 NFAT5O94916 1531 aa29.24■■■□□ 2.27
SQSTM1-215ENST00000514093 L3MBTL2Q969R5 705 aa29.23■■■□□ 2.27
SQSTM1-215ENST00000514093 TRPM1Q7Z4N2 1603 aa29.22■■■□□ 2.27
SQSTM1-215ENST00000514093 SENP3-EIF4A1A0A087X0R7 540 aa29.21■■■□□ 2.27
SQSTM1-215ENST00000514093 NLRP2Q9NX02 1062 aa29.21■■■□□ 2.27
SQSTM1-215ENST00000514093 KTN1Q86UP2 1357 aaKnown RBP29.21■■■□□ 2.27
SQSTM1-215ENST00000514093 NHSQ6T4R5 1651 aa29.21■■■□□ 2.27
SQSTM1-215ENST00000514093 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.2■■■□□ 2.26
SQSTM1-215ENST00000514093 ZNF827Q17R98 1081 aa29.19■■■□□ 2.26
SQSTM1-215ENST00000514093 C1QTNF8P60827 252 aa29.17■■■□□ 2.26
SQSTM1-215ENST00000514093 IL2RBP14784 551 aa29.16■■■□□ 2.26
SQSTM1-215ENST00000514093 LRRC4BQ9NT99 713 aa29.16■■■□□ 2.26
SQSTM1-215ENST00000514093 ERBB3P21860 1342 aa29.16■■■□□ 2.26
SQSTM1-215ENST00000514093 CHD4Q14839 1912 aa29.16■■■□□ 2.26
SQSTM1-215ENST00000514093 PAPPAQ13219 1627 aa29.15■■■□□ 2.26
SQSTM1-215ENST00000514093 GPR162Q16538 588 aa29.14■■■□□ 2.26
SQSTM1-215ENST00000514093 KLHL34Q8N239 644 aa29.14■■■□□ 2.26
SQSTM1-215ENST00000514093 ABCC6O95255 1503 aa29.14■■■□□ 2.25
SQSTM1-215ENST00000514093 NME9Q86XW9 330 aa29.13■■■□□ 2.25
SQSTM1-215ENST00000514093 BTAF1O14981 1849 aa29.12■■■□□ 2.25
SQSTM1-215ENST00000514093 ROCK2O75116 1388 aaKnown RBP29.12■■■□□ 2.25
SQSTM1-215ENST00000514093 ANKRD24Q8TF21 1146 aa29.11■■■□□ 2.25
SQSTM1-215ENST00000514093 KAT6BQ8WYB5 2073 aa29.1■■■□□ 2.25
SQSTM1-215ENST00000514093 SIN3AQ96ST3 1273 aa29.1■■■□□ 2.25
SQSTM1-215ENST00000514093 MAP3K5Q99683 1374 aa29.1■■■□□ 2.25
SQSTM1-215ENST00000514093 USP31Q70CQ4 1352 aa29.09■■■□□ 2.25
SQSTM1-215ENST00000514093 PELP1Q8IZL8 1130 aaKnown RBP29.08■■■□□ 2.25
SQSTM1-215ENST00000514093 AKT1S1Q96B36 256 aa29.07■■■□□ 2.24
SQSTM1-215ENST00000514093 MON2Q7Z3U7 1717 aa29.06■■■□□ 2.24
SQSTM1-215ENST00000514093 KCNQ4P56696 695 aa29.06■■■□□ 2.24
SQSTM1-215ENST00000514093 DDX54Q8TDD1 881 aaKnown RBP29.06■■■□□ 2.24
SQSTM1-215ENST00000514093 LTN1O94822 1766 aa29.04■■■□□ 2.24
SQSTM1-215ENST00000514093 NEUROD1Q13562 356 aa29.04■■■□□ 2.24
SQSTM1-215ENST00000514093 TMC1Q8TDI8 760 aa29.04■■■□□ 2.24
SQSTM1-215ENST00000514093 SBNO2Q9Y2G9 1366 aa29.03■■■□□ 2.24
SQSTM1-215ENST00000514093 PNPLA7Q6ZV29 1317 aa29.02■■■□□ 2.24
SQSTM1-215ENST00000514093 POLD1P28340 1107 aa29.02■■■□□ 2.24
SQSTM1-215ENST00000514093 SLC16A10Q8TF71 515 aa29.02■■■□□ 2.24
SQSTM1-215ENST00000514093 CD163L1Q9NR16 1453 aa29.02■■■□□ 2.24
SQSTM1-215ENST00000514093 SLC27A3Q5K4L6 730 aa29■■■□□ 2.23
SQSTM1-215ENST00000514093 NLGN2Q8NFZ4 835 aa29■■■□□ 2.23
SQSTM1-215ENST00000514093 SYTL4Q96C24 671 aaPredicted RBP29■■■□□ 2.23
SQSTM1-215ENST00000514093 LTV1Q96GA3 475 aaPredicted RBP29■■■□□ 2.23
SQSTM1-215ENST00000514093 SLC12A5Q9H2X9 1139 aa29■■■□□ 2.23
SQSTM1-215ENST00000514093 TFCP2L1Q9NZI6 479 aa29■■■□□ 2.23
SQSTM1-215ENST00000514093 GIGYF1O75420 1035 aaPredicted RBP28.99■■■□□ 2.23
SQSTM1-215ENST00000514093 USP54Q70EL1 1684 aa28.98■■■□□ 2.23
SQSTM1-215ENST00000514093 HDGFL2Q7Z4V5 671 aaPredicted RBP28.97■■■□□ 2.23
SQSTM1-215ENST00000514093 GOLGB1Q14789 3259 aaKnown RBP28.96■■■□□ 2.23
SQSTM1-215ENST00000514093 PRIM1P49642 420 aaKnown RBP28.96■■■□□ 2.23
SQSTM1-215ENST00000514093 IP6K1Q92551 441 aa28.94■■■□□ 2.22
SQSTM1-215ENST00000514093 QSER1Q2KHR3 1735 aa28.92■■■□□ 2.22
SQSTM1-215ENST00000514093 TUBGCP6Q96RT7 1819 aa28.91■■■□□ 2.22
SQSTM1-215ENST00000514093 EDC4Q6P2E9 1401 aaKnown RBP28.91■■■□□ 2.22
SQSTM1-215ENST00000514093 MSH5O43196 834 aa28.9■■■□□ 2.22
SQSTM1-215ENST00000514093 COL24A1Q17RW2 1714 aa28.89■■■□□ 2.22
SQSTM1-215ENST00000514093 YBX3P16989 372 aaKnown RBP eCLIP28.89■■■□□ 2.22
SQSTM1-215ENST00000514093 CARD11Q9BXL7 1154 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms