RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TCP11L2Q8N4U5 519 aa13.52□□□□□ -0.25
RNF4-221ENST00000513643 CCDC9Q9Y3X0 531 aaKnown RBP13.52□□□□□ -0.25
RNF4-221ENST00000513643 WDR17Q8IZU2 1322 aa13.52□□□□□ -0.25
RNF4-221ENST00000513643 MYOM1P52179 1685 aa13.52□□□□□ -0.25
RNF4-221ENST00000513643 THSD7AQ9UPZ6 1657 aa13.52□□□□□ -0.25
RNF4-221ENST00000513643 CRB1P82279 1406 aa13.51□□□□□ -0.25
RNF4-221ENST00000513643 KRT27Q7Z3Y8 459 aa13.51□□□□□ -0.25
RNF4-221ENST00000513643 CCDC125Q86Z20 511 aa13.5□□□□□ -0.25
RNF4-221ENST00000513643 COG3Q96JB2 828 aa13.5□□□□□ -0.25
RNF4-221ENST00000513643 BRWD3Q6RI45 1802 aa13.49□□□□□ -0.25
RNF4-221ENST00000513643 IP6K1Q92551 441 aa13.49□□□□□ -0.25
RNF4-221ENST00000513643 CARD10Q9BWT7 1032 aa13.49□□□□□ -0.25
RNF4-221ENST00000513643 ERBB3P21860 1342 aa13.48□□□□□ -0.25
RNF4-221ENST00000513643 MAP3K19Q56UN5 1328 aa13.48□□□□□ -0.25
RNF4-221ENST00000513643 SOX12O15370 315 aa13.48□□□□□ -0.25
RNF4-221ENST00000513643 FBLN1P23142 703 aa13.48□□□□□ -0.25
RNF4-221ENST00000513643 GGNBP2Q9H3C7 697 aa13.48□□□□□ -0.25
RNF4-221ENST00000513643 NSD3Q9BZ95 1437 aa13.47□□□□□ -0.25
RNF4-221ENST00000513643 DISP2A7MBM2 1401 aa13.47□□□□□ -0.25
RNF4-221ENST00000513643 BLMP54132 1417 aaPredicted RBP13.47□□□□□ -0.25
RNF4-221ENST00000513643 KIF7Q2M1P5 1343 aa13.46□□□□□ -0.25
RNF4-221ENST00000513643 PANK3Q9H999 370 aa13.46□□□□□ -0.25
RNF4-221ENST00000513643 USP35Q9P2H5 1018 aa13.46□□□□□ -0.25
RNF4-221ENST00000513643 ZBTB7CA1YPR0 619 aa13.45□□□□□ -0.26
RNF4-221ENST00000513643 HOXC9P31274 260 aa13.45□□□□□ -0.26
RNF4-221ENST00000513643 TOM1L2Q6ZVM7 507 aa13.45□□□□□ -0.26
RNF4-221ENST00000513643 SRCAPQ6ZRS2 3230 aa13.44□□□□□ -0.26
RNF4-221ENST00000513643 CDCA7Q9BWT1 371 aaPredicted RBP13.44□□□□□ -0.26
RNF4-221ENST00000513643 KIF24Q5T7B8 1368 aa13.44□□□□□ -0.26
RNF4-221ENST00000513643 CGNL1Q0VF96 1302 aa13.43□□□□□ -0.26
RNF4-221ENST00000513643 PER1O15534 1290 aaPredicted RBP13.43□□□□□ -0.26
RNF4-221ENST00000513643 ANKRD24Q8TF21 1146 aa13.43□□□□□ -0.26
RNF4-221ENST00000513643 RTL1A6NKG5 1358 aa13.43□□□□□ -0.26
RNF4-221ENST00000513643 CCDC7Q96M83 1385 aa13.43□□□□□ -0.26
RNF4-221ENST00000513643 RGPD5Q99666 1765 aa13.43□□□□□ -0.26
RNF4-221ENST00000513643 BCL9O00512 1426 aa13.42□□□□□ -0.26
RNF4-221ENST00000513643 RRS1Q15050 365 aaKnown RBP13.42□□□□□ -0.26
RNF4-221ENST00000513643 FAM196AQ6ZSG2 479 aa13.42□□□□□ -0.26
RNF4-221ENST00000513643 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
RNF4-221ENST00000513643 LTN1O94822 1766 aa13.41□□□□□ -0.26
RNF4-221ENST00000513643 FAM182BQ5T319 152 aa13.41□□□□□ -0.26
RNF4-221ENST00000513643 WASHC2AQ641Q2 1341 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 A0A0G2JS52 829 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 CSB-PGBD3P0DP91 1061 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 AMPHP49418 695 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 MYT1Q01538 1121 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 AMER1Q5JTC6 1135 aaPredicted RBP13.4□□□□□ -0.26
RNF4-221ENST00000513643 INSRP06213 1382 aa13.4□□□□□ -0.26
RNF4-221ENST00000513643 PDE3BQ13370 1112 aa13.39□□□□□ -0.27
RNF4-221ENST00000513643 HSP90AB2PQ58FF8 381 aa13.39□□□□□ -0.27
RNF4-221ENST00000513643 MARCH10Q8NA82 808 aaPredicted RBP13.39□□□□□ -0.27
RNF4-221ENST00000513643 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
RNF4-221ENST00000513643 POLKQ9UBT6 870 aa13.39□□□□□ -0.27
RNF4-221ENST00000513643 NSD2O96028 1365 aa13.39□□□□□ -0.27
RNF4-221ENST00000513643 DDB1Q16531 1140 aa13.38□□□□□ -0.27
RNF4-221ENST00000513643 NLRP2Q9NX02 1062 aa13.38□□□□□ -0.27
RNF4-221ENST00000513643 EMILIN1Q9Y6C2 1016 aa13.38□□□□□ -0.27
RNF4-221ENST00000513643 KIF20BQ96Q89 1820 aa13.38□□□□□ -0.27
RNF4-221ENST00000513643 PEAK1Q9H792 1746 aa13.38□□□□□ -0.27
RNF4-221ENST00000513643 FLT4P35916 1363 aa13.37□□□□□ -0.27
RNF4-221ENST00000513643 IL2RBP14784 551 aa13.37□□□□□ -0.27
RNF4-221ENST00000513643 NBPF6Q5VWK0 638 aa13.37□□□□□ -0.27
RNF4-221ENST00000513643 DEFB132Q7Z7B7 95 aa13.37□□□□□ -0.27
RNF4-221ENST00000513643 NBPF4Q96M43 638 aa13.37□□□□□ -0.27
RNF4-221ENST00000513643 LRRC37A3O60309 1634 aa13.36□□□□□ -0.27
RNF4-221ENST00000513643 EXOC5O00471 708 aa13.36□□□□□ -0.27
RNF4-221ENST00000513643 NCAPD2Q15021 1401 aa13.36□□□□□ -0.27
RNF4-221ENST00000513643 NPC1L1Q9UHC9 1359 aa13.35□□□□□ -0.27
RNF4-221ENST00000513643 WNK3Q9BYP7 1800 aa13.35□□□□□ -0.27
RNF4-221ENST00000513643 KNSTRNQ9Y448 316 aa13.35□□□□□ -0.27
RNF4-221ENST00000513643 ANKRD26Q9UPS8 1709 aa13.34□□□□□ -0.27
RNF4-221ENST00000513643 OVOS2A0A0G2JMS6 1433 aa13.34□□□□□ -0.27
RNF4-221ENST00000513643 TNS2Q63HR2 1409 aa13.34□□□□□ -0.27
RNF4-221ENST00000513643 SMG6Q86US8 1419 aaKnown RBP13.34□□□□□ -0.27
RNF4-221ENST00000513643 TRIM37O94972 964 aa13.34□□□□□ -0.27
RNF4-221ENST00000513643 LTV1Q96GA3 475 aaPredicted RBP13.34□□□□□ -0.27
RNF4-221ENST00000513643 CAMKK2Q96RR4 588 aa13.34□□□□□ -0.27
RNF4-221ENST00000513643 FAM208AQ9UK61 1670 aaKnown RBP13.34□□□□□ -0.27
RNF4-221ENST00000513643 SF3B2Q13435 895 aaKnown RBP13.32□□□□□ -0.28
RNF4-221ENST00000513643 PTF1AQ7RTS3 328 aa13.32□□□□□ -0.28
RNF4-221ENST00000513643 TNS1Q9HBL0 1735 aaKnown RBP13.31□□□□□ -0.28
RNF4-221ENST00000513643 BAG6P46379 1132 aa13.31□□□□□ -0.28
RNF4-221ENST00000513643 EN1Q05925 392 aaPredicted RBP13.31□□□□□ -0.28
RNF4-221ENST00000513643 BCL11BQ9C0K0 894 aaPredicted RBP13.31□□□□□ -0.28
RNF4-221ENST00000513643 MEGF6O75095 1541 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 PLSCR1O15162 318 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 MORC1Q86VD1 984 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 EYA1Q99502 592 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 PARD3Q8TEW0 1356 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 RGPD1P0DJD0 1748 aa13.3□□□□□ -0.28
RNF4-221ENST00000513643 MAP2P11137 1827 aaKnown RBP13.29□□□□□ -0.28
RNF4-221ENST00000513643 APBA3O96018 575 aa13.29□□□□□ -0.28
RNF4-221ENST00000513643 EIF4A2Q14240 407 aaKnown RBP13.29□□□□□ -0.28
RNF4-221ENST00000513643 RGPD2P0DJD1 1756 aa13.28□□□□□ -0.28
RNF4-221ENST00000513643 TNNT2P45379 298 aaPredicted RBP13.28□□□□□ -0.28
RNF4-221ENST00000513643 EZH2Q15910 746 aaKnown RBP13.28□□□□□ -0.28
RNF4-221ENST00000513643 PROM2Q8N271 834 aa13.28□□□□□ -0.28
RNF4-221ENST00000513643 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
RNF4-221ENST00000513643 ZCRB1Q8TBF4 217 aaKnown RBP13.28□□□□□ -0.28
RNF4-221ENST00000513643 SBF2Q86WG5 1849 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms