RNA–Protein interactions for RNA: ENST00000513423.1

FGFR4-215, Transcript of fibroblast growth factor receptor 4, human

TSL 2

Gene FGFR4, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR4-215	ENST00000513423	GLI3	P10071	1580 aa		18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	AMER1	Q5JTC6	1135 aa	Predicted RBP	18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	COL5A2	P05997	1499 aa	Predicted RBP	18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	CDK12	Q9NYV4	1490 aa	Predicted RBP	18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	ABCC6	O95255	1503 aa		18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	MAP3K19	Q56UN5	1328 aa		18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	SPATA31A5	Q5VU36	1347 aa		18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	SPATA31A7	Q8IWB4	1347 aa		18.68	■□□□□ 0.58
FGFR4-215	ENST00000513423	LARP1	Q6PKG0	1096 aa	Known RBP	18.67	■□□□□ 0.58
FGFR4-215	ENST00000513423	CCDC9	Q9Y3X0	531 aa	Known RBP	18.67	■□□□□ 0.58
FGFR4-215	ENST00000513423	LTN1	O94822	1766 aa		18.67	■□□□□ 0.58
FGFR4-215	ENST00000513423	NSD2	O96028	1365 aa		18.67	■□□□□ 0.58
FGFR4-215	ENST00000513423	RGPD5	Q99666	1765 aa		18.66	■□□□□ 0.58
FGFR4-215	ENST00000513423	ONECUT3	O60422	494 aa	Predicted RBP	18.66	■□□□□ 0.58
FGFR4-215	ENST00000513423	IP6K1	Q92551	441 aa		18.66	■□□□□ 0.58
FGFR4-215	ENST00000513423	RRS1	Q15050	365 aa	Known RBP	18.65	■□□□□ 0.58
FGFR4-215	ENST00000513423	SPATA31A1	Q5TZJ5	1347 aa		18.65	■□□□□ 0.58
FGFR4-215	ENST00000513423	ANKRD26	Q9UPS8	1709 aa		18.64	■□□□□ 0.57
FGFR4-215	ENST00000513423	HOXC9	P31274	260 aa		18.63	■□□□□ 0.57
FGFR4-215	ENST00000513423	WDR17	Q8IZU2	1322 aa		18.63	■□□□□ 0.57
FGFR4-215	ENST00000513423	RGS12	O14924	1447 aa		18.63	■□□□□ 0.57
FGFR4-215	ENST00000513423	AMPH	P49418	695 aa		18.62	■□□□□ 0.57
FGFR4-215	ENST00000513423	BLM	P54132	1417 aa	Predicted RBP	18.61	■□□□□ 0.57
FGFR4-215	ENST00000513423	CRB1	P82279	1406 aa		18.61	■□□□□ 0.57
FGFR4-215	ENST00000513423	MORC1	Q86VD1	984 aa		18.61	■□□□□ 0.57
FGFR4-215	ENST00000513423	RTL1	A6NKG5	1358 aa		18.6	■□□□□ 0.57
FGFR4-215	ENST00000513423	KIF24	Q5T7B8	1368 aa		18.6	■□□□□ 0.57
FGFR4-215	ENST00000513423	NPC1L1	Q9UHC9	1359 aa		18.6	■□□□□ 0.57
FGFR4-215	ENST00000513423	FAM98C	Q17RN3	349 aa	Known RBP	18.6	■□□□□ 0.57
FGFR4-215	ENST00000513423	POLK	Q9UBT6	870 aa		18.6	■□□□□ 0.57
FGFR4-215	ENST00000513423	ERBB3	P21860	1342 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	TNNT2	P45379	298 aa	Predicted RBP	18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	BARGIN	Q6ZT62	677 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	TOM1L2	Q6ZVM7	507 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	SEPT12	Q8IYM1	358 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	TCP11L2	Q8N4U5	519 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	ANKRD24	Q8TF21	1146 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	USP35	Q9P2H5	1018 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	EMILIN1	Q9Y6C2	1016 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	PEAK1	Q9H792	1746 aa		18.59	■□□□□ 0.57
FGFR4-215	ENST00000513423	CSB-PGBD3	P0DP91	1061 aa		18.58	■□□□□ 0.56
FGFR4-215	ENST00000513423	CC2D1B	Q5T0F9	858 aa	Known RBP	18.58	■□□□□ 0.56
FGFR4-215	ENST00000513423	CARD10	Q9BWT7	1032 aa		18.58	■□□□□ 0.56
FGFR4-215	ENST00000513423	THRAP3	Q9Y2W1	955 aa	Known RBP	18.58	■□□□□ 0.56
FGFR4-215	ENST00000513423	MAP2	P11137	1827 aa	Known RBP	18.58	■□□□□ 0.56
FGFR4-215	ENST00000513423	HSP90AB2P	Q58FF8	381 aa		18.57	■□□□□ 0.56
FGFR4-215	ENST00000513423	INSR	P06213	1382 aa		18.56	■□□□□ 0.56
FGFR4-215	ENST00000513423	FLT4	P35916	1363 aa		18.56	■□□□□ 0.56
FGFR4-215	ENST00000513423	LTV1	Q96GA3	475 aa	Predicted RBP	18.56	■□□□□ 0.56
FGFR4-215	ENST00000513423	THSD7A	Q9UPZ6	1657 aa		18.54	■□□□□ 0.56
FGFR4-215	ENST00000513423	PPM1G	O15355	546 aa	Predicted RBP	18.54	■□□□□ 0.56
FGFR4-215	ENST00000513423	DDX10	Q13206	875 aa	Known RBP	18.54	■□□□□ 0.56
FGFR4-215	ENST00000513423	NLRP2	Q9NX02	1062 aa		18.54	■□□□□ 0.56
FGFR4-215	ENST00000513423	SOCS7	O14512	581 aa		18.53	■□□□□ 0.56
FGFR4-215	ENST00000513423	BRWD3	Q6RI45	1802 aa		18.53	■□□□□ 0.56
FGFR4-215	ENST00000513423	SMG6	Q86US8	1419 aa	Known RBP	18.52	■□□□□ 0.56
FGFR4-215	ENST00000513423		A0A0G2JS52	829 aa		18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	ZNF316	A6NFI3	1004 aa	Predicted RBP	18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	MYT1	Q01538	1121 aa		18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	CNGB1	Q14028	1251 aa	Predicted RBP	18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	NBPF6	Q5VWK0	638 aa		18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	KRT27	Q7Z3Y8	459 aa		18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	NBPF4	Q96M43	638 aa		18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	FAM208A	Q9UK61	1670 aa	Known RBP	18.5	■□□□□ 0.55
FGFR4-215	ENST00000513423	DISP2	A7MBM2	1401 aa		18.49	■□□□□ 0.55
FGFR4-215	ENST00000513423	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.49	■□□□□ 0.55
FGFR4-215	ENST00000513423	RGPD2	P0DJD1	1756 aa		18.48	■□□□□ 0.55
FGFR4-215	ENST00000513423	MTHFS	P49914	203 aa		18.48	■□□□□ 0.55
FGFR4-215	ENST00000513423	WNK3	Q9BYP7	1800 aa		18.47	■□□□□ 0.55
FGFR4-215	ENST00000513423	EIF4A2	Q14240	407 aa	Known RBP	18.47	■□□□□ 0.55
FGFR4-215	ENST00000513423	PARP4	Q9UKK3	1724 aa	Known RBP	18.46	■□□□□ 0.55
FGFR4-215	ENST00000513423	IL2RB	P14784	551 aa		18.45	■□□□□ 0.54
FGFR4-215	ENST00000513423	EYA1	Q99502	592 aa		18.45	■□□□□ 0.54
FGFR4-215	ENST00000513423	DDB1	Q16531	1140 aa		18.44	■□□□□ 0.54
FGFR4-215	ENST00000513423	USHBP1	Q8N6Y0	703 aa		18.44	■□□□□ 0.54
FGFR4-215	ENST00000513423	UPF1	Q92900	1129 aa	Known RBP eCLIP	18.44	■□□□□ 0.54	4e-7	■■■■■ 53.5
FGFR4-215	ENST00000513423	NCAPD2	Q15021	1401 aa		18.43	■□□□□ 0.54
FGFR4-215	ENST00000513423	LRRC37A3	O60309	1634 aa		18.43	■□□□□ 0.54
FGFR4-215	ENST00000513423	EXOC5	O00471	708 aa		18.43	■□□□□ 0.54
FGFR4-215	ENST00000513423	PDE3B	Q13370	1112 aa		18.43	■□□□□ 0.54
FGFR4-215	ENST00000513423	FAM182B	Q5T319	152 aa		18.43	■□□□□ 0.54
FGFR4-215	ENST00000513423	PPP2R1A	P30153	589 aa		18.42	■□□□□ 0.54
FGFR4-215	ENST00000513423	PARD3	Q8TEW0	1356 aa		18.42	■□□□□ 0.54
FGFR4-215	ENST00000513423	IL13	P35225	146 aa		18.41	■□□□□ 0.54
FGFR4-215	ENST00000513423	MARCH10	Q8NA82	808 aa	Predicted RBP	18.4	■□□□□ 0.54
FGFR4-215	ENST00000513423	MEGF6	O75095	1541 aa		18.39	■□□□□ 0.54
FGFR4-215	ENST00000513423	IGSF1	Q8N6C5	1336 aa		18.39	■□□□□ 0.53
FGFR4-215	ENST00000513423	FAM196A	Q6ZSG2	479 aa		18.38	■□□□□ 0.53
FGFR4-215	ENST00000513423	TNS2	Q63HR2	1409 aa		18.38	■□□□□ 0.53
FGFR4-215	ENST00000513423	RALBP1	Q15311	655 aa		18.37	■□□□□ 0.53
FGFR4-215	ENST00000513423	RAPGEF4	Q8WZA2	1011 aa		18.37	■□□□□ 0.53
FGFR4-215	ENST00000513423	OVOS2	A0A0G2JMS6	1433 aa		18.37	■□□□□ 0.53
FGFR4-215	ENST00000513423	DIAPH1	O60610	1272 aa	Known RBP	18.36	■□□□□ 0.53
FGFR4-215	ENST00000513423	COL3A1	P02461	1466 aa	Predicted RBP	18.36	■□□□□ 0.53
FGFR4-215	ENST00000513423	TAT	P17735	454 aa	Predicted RBP	18.36	■□□□□ 0.53
FGFR4-215	ENST00000513423	CCDC125	Q86Z20	511 aa		18.36	■□□□□ 0.53
FGFR4-215	ENST00000513423	ZCRB1	Q8TBF4	217 aa	Known RBP	18.36	■□□□□ 0.53
FGFR4-215	ENST00000513423	RGPD1	P0DJD0	1748 aa		18.35	■□□□□ 0.53
FGFR4-215	ENST00000513423	BCL9	O00512	1426 aa		18.34	■□□□□ 0.53
FGFR4-215	ENST00000513423	CFAP53	Q96M91	514 aa		18.33	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms