RNA–Protein interactions for RNA: ENST00000512909.1

HTT-210, Transcript of huntingtin, humanhuman

TSL 3

Gene HTT, Length 611 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-210ENST00000512909 MAP7D1Q3KQU3 841 aa7.58□□□□□ -1.2
HTT-210ENST00000512909 LARP1Q6PKG0 1096 aaKnown RBP7.58□□□□□ -1.2
HTT-210ENST00000512909 TBC1D9Q6ZT07 1266 aa7.58□□□□□ -1.2
HTT-210ENST00000512909 USP17L5A8MUK1 530 aa7.57□□□□□ -1.2
HTT-210ENST00000512909 CDCA8Q53HL2 280 aa7.57□□□□□ -1.2
HTT-210ENST00000512909 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.56□□□□□ -1.2
HTT-210ENST00000512909 USP17L3A6NCW0 530 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 USP17L4A6NCW7 530 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 MYCP01106 439 aaPredicted RBP7.56□□□□□ -1.2
HTT-210ENST00000512909 OXLD1Q5BKU9 147 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 RC3H1Q5TC82 1133 aaKnown RBP7.56□□□□□ -1.2
HTT-210ENST00000512909 USP17L2Q6R6M4 530 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 USP17L1Q7RTZ2 530 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 SH3RF1Q7Z6J0 888 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 TRIM50Q86XT4 487 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 PLPP7Q8NBV4 271 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 NOD1Q9Y239 953 aa7.56□□□□□ -1.2
HTT-210ENST00000512909 MAFBQ9Y5Q3 323 aaPredicted RBP7.56□□□□□ -1.2
HTT-210ENST00000512909 ATP5J2-PTCD1G3V325 749 aa7.55□□□□□ -1.2
HTT-210ENST00000512909 ATP1A2P50993 1020 aa7.55□□□□□ -1.2
HTT-210ENST00000512909 PSME1Q06323 249 aa7.55□□□□□ -1.2
HTT-210ENST00000512909 DEPDC4Q8N2C3 294 aa7.55□□□□□ -1.2
HTT-210ENST00000512909 KCTD15Q96SI1 283 aaPredicted RBP7.55□□□□□ -1.2
HTT-210ENST00000512909 PCDHB11Q9Y5F2 797 aa7.55□□□□□ -1.2
HTT-210ENST00000512909 PIK3CDO00329 1044 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 GIGYF1O75420 1035 aaPredicted RBP7.54□□□□□ -1.2
HTT-210ENST00000512909 RGS20O76081 388 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 DHX9Q08211 1270 aaKnown RBP7.54□□□□□ -1.2
HTT-210ENST00000512909 PLA2G2CQ5R387 149 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 CFAP70Q5T0N1 1121 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 IFFO2Q5TF58 517 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 SEPT12Q8IYM1 358 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 UCN2Q96RP3 112 aa7.54□□□□□ -1.2
HTT-210ENST00000512909 MKRN1Q9UHC7 482 aaKnown RBP7.54□□□□□ -1.2
HTT-210ENST00000512909 RASA1P20936 1047 aa7.53□□□□□ -1.2
HTT-210ENST00000512909 USP4Q13107 963 aa7.53□□□□□ -1.2
HTT-210ENST00000512909 NCOA4Q13772 614 aa7.53□□□□□ -1.2
HTT-210ENST00000512909 TRMT44Q8IYL2 757 aaKnown RBP7.53□□□□□ -1.2
HTT-210ENST00000512909 WASF2Q9Y6W5 498 aa7.53□□□□□ -1.2
HTT-210ENST00000512909 ZBTB7CA1YPR0 619 aa7.52□□□□□ -1.21
HTT-210ENST00000512909 FOXC1Q12948 553 aa7.52□□□□□ -1.21
HTT-210ENST00000512909 ZNF697Q5TEC3 545 aa7.52□□□□□ -1.21
HTT-210ENST00000512909 PLEKHM2Q8IWE5 1019 aa7.52□□□□□ -1.21
HTT-210ENST00000512909 OCSTAMPQ9BR26 566 aa7.52□□□□□ -1.21
HTT-210ENST00000512909 FSHRP23945 695 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 SKOR1P84550 965 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 C4orf48Q5BLP8 95 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 LIAT1Q6ZQX7 453 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 C1QTNF2Q9BXJ5 285 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 MAP4K5Q9Y4K4 846 aa7.51□□□□□ -1.21
HTT-210ENST00000512909 A0A0G2JS52 829 aa7.5□□□□□ -1.21
HTT-210ENST00000512909 TTC24A2A3L6 582 aaPredicted RBP7.5□□□□□ -1.21
HTT-210ENST00000512909 RETREG2Q8NC44 543 aa7.5□□□□□ -1.21
HTT-210ENST00000512909 PRKD2Q9BZL6 878 aa7.5□□□□□ -1.21
HTT-210ENST00000512909 WNT7AO00755 349 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 SPRYD7Q5W111 196 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 B4GALNT3Q6L9W6 998 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 ZNF598Q86UK7 904 aaKnown RBP7.49□□□□□ -1.21
HTT-210ENST00000512909 FAM200AQ8TCP9 573 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 DNAAF2Q9NVR5 837 aaKnown RBP7.49□□□□□ -1.21
HTT-210ENST00000512909 PGPEP1Q9NXJ5 209 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 USTQ9Y2C2 406 aa7.49□□□□□ -1.21
HTT-210ENST00000512909 ATG7O95352 703 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 ALDH1A1P00352 501 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 NR5A1Q13285 461 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 AEBP1Q8IUX7 1158 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 CYP4X1Q8N118 509 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 KCTD17Q8N5Z5 321 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 IRX2Q9BZI1 471 aaPredicted RBP7.48□□□□□ -1.21
HTT-210ENST00000512909 TLL2Q9Y6L7 1015 aa7.48□□□□□ -1.21
HTT-210ENST00000512909 USP17L15C9J2P7 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 PATL2C9JE40 543 aaKnown RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L10C9JJH3 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L13C9JLJ4 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L12C9JPN9 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L11C9JVI0 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L21D6R901 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L18D6R9N7 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L22D6RA61 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L17D6RBQ6 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L19D6RCP7 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L20D6RJB6 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 ADH1CP00326 375 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 GTF2IP78347 998 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 USP17L24Q0WX57 530 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 INTS6LQ5JSJ4 861 aaKnown RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 CCDC116Q8IYX3 515 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 PHTF2Q8N3S3 785 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 OGFOD1Q8N543 542 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 ZNF594Q96JF6 807 aaPredicted RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 MRGPRX2Q96LB1 330 aa7.47□□□□□ -1.21
HTT-210ENST00000512909 CCDC85AQ96PX6 553 aaPredicted RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 NOVA2Q9UNW9 492 aaKnown RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 V9GY48 417 aaPredicted RBP7.47□□□□□ -1.21
HTT-210ENST00000512909 FAM196BA6NMK8 535 aa7.46□□□□□ -1.22
HTT-210ENST00000512909 ESPNB1AK53 854 aa7.46□□□□□ -1.22
HTT-210ENST00000512909 MYT1Q01538 1121 aa7.46□□□□□ -1.22
HTT-210ENST00000512909 ERVH48-1M5A8F1 160 aa7.45□□□□□ -1.22
HTT-210ENST00000512909 KANK4Q5T7N3 995 aaPredicted RBP7.45□□□□□ -1.22
HTT-210ENST00000512909 CC2D2BQ6DHV5 1058 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms