RNA–Protein interactions for RNA: ENST00000512304.2

PROM1-213, Transcript of prominin 1, humanhuman

TSL 4

Gene PROM1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-213ENST00000512304 ABTB2Q8N961 1025 aa13.61□□□□□ -0.23
PROM1-213ENST00000512304 CDK19Q9BWU1 502 aa13.61□□□□□ -0.23
PROM1-213ENST00000512304 STK32BQ9NY57 414 aa13.61□□□□□ -0.23
PROM1-213ENST00000512304 USP19O94966 1318 aa13.61□□□□□ -0.23
PROM1-213ENST00000512304 CPDO75976 1380 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 LMO7Q8WWI1 1683 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 GCP02774 474 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 DDB1Q16531 1140 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 ARXQ96QS3 562 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 AXIN2Q9Y2T1 843 aa13.6□□□□□ -0.23
PROM1-213ENST00000512304 THRAP3Q9Y2W1 955 aaKnown RBP13.6□□□□□ -0.23
PROM1-213ENST00000512304 GPR162Q16538 588 aa13.59□□□□□ -0.23
PROM1-213ENST00000512304 PELP1Q8IZL8 1130 aaKnown RBP13.59□□□□□ -0.23
PROM1-213ENST00000512304 MTFR1LQ9H019 292 aa13.59□□□□□ -0.23
PROM1-213ENST00000512304 ZNF827Q17R98 1081 aa13.58□□□□□ -0.24
PROM1-213ENST00000512304 KLHL34Q8N239 644 aa13.58□□□□□ -0.24
PROM1-213ENST00000512304 CRB1P82279 1406 aa13.57□□□□□ -0.24
PROM1-213ENST00000512304 NLGN2Q8NFZ4 835 aa13.57□□□□□ -0.24
PROM1-213ENST00000512304 POLR3AO14802 1390 aaPredicted RBP13.57□□□□□ -0.24
PROM1-213ENST00000512304 EIF3AQ14152 1382 aaKnown RBP13.57□□□□□ -0.24
PROM1-213ENST00000512304 TOM1L2Q6ZVM7 507 aa13.56□□□□□ -0.24
PROM1-213ENST00000512304 ACSBG1Q96GR2 724 aa13.56□□□□□ -0.24
PROM1-213ENST00000512304 LRRC37A3O60309 1634 aa13.56□□□□□ -0.24
PROM1-213ENST00000512304 PARP4Q9UKK3 1724 aaKnown RBP13.55□□□□□ -0.24
PROM1-213ENST00000512304 PLEKHG3A1L390 1219 aa13.54□□□□□ -0.24
PROM1-213ENST00000512304 DCAF11Q8TEB1 546 aa13.54□□□□□ -0.24
PROM1-213ENST00000512304 YBX3P16989 372 aaKnown RBP eCLIP13.53□□□□□ -0.24
PROM1-213ENST00000512304 KCNQ4P56696 695 aa13.53□□□□□ -0.24
PROM1-213ENST00000512304 LRRC4BQ9NT99 713 aa13.53□□□□□ -0.24
PROM1-213ENST00000512304 SOX12O15370 315 aa13.52□□□□□ -0.25
PROM1-213ENST00000512304 DSG3P32926 999 aa13.52□□□□□ -0.25
PROM1-213ENST00000512304 CCDC61Q9Y6R9 512 aa13.52□□□□□ -0.25
PROM1-213ENST00000512304 SHANK3Q9BYB0 1731 aa13.51□□□□□ -0.25
PROM1-213ENST00000512304 AATKQ6ZMQ8 1374 aa13.51□□□□□ -0.25
PROM1-213ENST00000512304 NLRP13Q86W25 1043 aa13.51□□□□□ -0.25
PROM1-213ENST00000512304 CABP2Q9NPB3 220 aa13.51□□□□□ -0.25
PROM1-213ENST00000512304 NLRP6P59044 892 aa13.5□□□□□ -0.25
PROM1-213ENST00000512304 MAP3K5Q99683 1374 aa13.49□□□□□ -0.25
PROM1-213ENST00000512304 WDR17Q8IZU2 1322 aa13.49□□□□□ -0.25
PROM1-213ENST00000512304 RGPD3A6NKT7 1758 aaPredicted RBP13.48□□□□□ -0.25
PROM1-213ENST00000512304 RGPD4Q7Z3J3 1758 aa13.48□□□□□ -0.25
PROM1-213ENST00000512304 C11orf95C9JLR9 678 aaPredicted RBP13.48□□□□□ -0.25
PROM1-213ENST00000512304 ZNF526Q8TF50 670 aaPredicted RBP13.48□□□□□ -0.25
PROM1-213ENST00000512304 SBF2Q86WG5 1849 aa13.48□□□□□ -0.25
PROM1-213ENST00000512304 BCL9O00512 1426 aa13.47□□□□□ -0.25
PROM1-213ENST00000512304 PPIP5K1Q6PFW1 1433 aa13.47□□□□□ -0.25
PROM1-213ENST00000512304 EXOC5O00471 708 aa13.46□□□□□ -0.25
PROM1-213ENST00000512304 CSB-PGBD3P0DP91 1061 aa13.46□□□□□ -0.25
PROM1-213ENST00000512304 NBPF1Q3BBV0 1214 aa13.46□□□□□ -0.25
PROM1-213ENST00000512304 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
PROM1-213ENST00000512304 CABP1Q9NZU7 370 aa13.46□□□□□ -0.25
PROM1-213ENST00000512304 ATP10DQ9P241 1426 aa13.46□□□□□ -0.26
PROM1-213ENST00000512304 PNPLA7Q6ZV29 1317 aa13.45□□□□□ -0.26
PROM1-213ENST00000512304 TOPAZ1Q8N9V7 1692 aa13.45□□□□□ -0.26
PROM1-213ENST00000512304 SRPK2P78362 688 aaKnown RBP13.45□□□□□ -0.26
PROM1-213ENST00000512304 ARHGEF25Q86VW2 580 aa13.45□□□□□ -0.26
PROM1-213ENST00000512304 CARD10Q9BWT7 1032 aa13.45□□□□□ -0.26
PROM1-213ENST00000512304 PAPPAQ13219 1627 aa13.45□□□□□ -0.26
PROM1-213ENST00000512304 WWC3Q9ULE0 1092 aa13.44□□□□□ -0.26
PROM1-213ENST00000512304 SLIT3O75094 1523 aa13.44□□□□□ -0.26
PROM1-213ENST00000512304 CPSF1Q10570 1443 aaKnown RBP13.43□□□□□ -0.26
PROM1-213ENST00000512304 ARHGEF28Q8N1W1 1705 aaKnown RBP13.43□□□□□ -0.26
PROM1-213ENST00000512304 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
PROM1-213ENST00000512304 COL18A1P39060 1754 aa13.43□□□□□ -0.26
PROM1-213ENST00000512304 USP6P35125 1406 aa13.42□□□□□ -0.26
PROM1-213ENST00000512304 HSPA6P17066 643 aa13.42□□□□□ -0.26
PROM1-213ENST00000512304 MSL1Q68DK7 614 aa13.42□□□□□ -0.26
PROM1-213ENST00000512304 SAMD1Q6SPF0 538 aaPredicted RBP13.41□□□□□ -0.26
PROM1-213ENST00000512304 TNS2Q63HR2 1409 aa13.4□□□□□ -0.26
PROM1-213ENST00000512304 ITSN1Q15811 1721 aa13.4□□□□□ -0.26
PROM1-213ENST00000512304 ABCB7O75027 752 aa13.4□□□□□ -0.26
PROM1-213ENST00000512304 CDCA7Q9BWT1 371 aaPredicted RBP13.4□□□□□ -0.26
PROM1-213ENST00000512304 POLD1P28340 1107 aa13.39□□□□□ -0.27
PROM1-213ENST00000512304 CHD4Q14839 1912 aa13.39□□□□□ -0.27
PROM1-213ENST00000512304 BRD4O60885 1362 aaPredicted RBP13.38□□□□□ -0.27
PROM1-213ENST00000512304 GPBP1L1Q9HC44 474 aaPredicted RBP13.38□□□□□ -0.27
PROM1-213ENST00000512304 TFCP2L1Q9NZI6 479 aa13.38□□□□□ -0.27
PROM1-213ENST00000512304 SMIM5Q71RC9 77 aa13.37□□□□□ -0.27
PROM1-213ENST00000512304 NLRP2Q9NX02 1062 aa13.37□□□□□ -0.27
PROM1-213ENST00000512304 PIK3C2AO00443 1686 aa13.37□□□□□ -0.27
PROM1-213ENST00000512304 TTC21BQ7Z4L5 1316 aa13.37□□□□□ -0.27
PROM1-213ENST00000512304 COL23A1Q86Y22 540 aaPredicted RBP13.36□□□□□ -0.27
PROM1-213ENST00000512304 WNK3Q9BYP7 1800 aa13.36□□□□□ -0.27
PROM1-213ENST00000512304 ADCY9O60503 1353 aa13.35□□□□□ -0.27
PROM1-213ENST00000512304 RAB3GAP2Q9H2M9 1393 aa13.35□□□□□ -0.27
PROM1-213ENST00000512304 NHSQ6T4R5 1651 aa13.35□□□□□ -0.27
PROM1-213ENST00000512304 DDX54Q8TDD1 881 aaKnown RBP13.35□□□□□ -0.27
PROM1-213ENST00000512304 KIF3CO14782 793 aa13.34□□□□□ -0.27
PROM1-213ENST00000512304 GRIN3BO60391 1043 aa13.34□□□□□ -0.27
PROM1-213ENST00000512304 HTRA3P83110 453 aa13.34□□□□□ -0.27
PROM1-213ENST00000512304 COL13A1Q5TAT6 717 aaPredicted RBP13.34□□□□□ -0.27
PROM1-213ENST00000512304 SLC16A10Q8TF71 515 aa13.34□□□□□ -0.27
PROM1-213ENST00000512304 CENPJQ9HC77 1338 aaPredicted RBP13.34□□□□□ -0.27
PROM1-213ENST00000512304 NFAT5O94916 1531 aa13.34□□□□□ -0.27
PROM1-213ENST00000512304 CCDC7Q96M83 1385 aa13.33□□□□□ -0.27
PROM1-213ENST00000512304 IL2RBP14784 551 aa13.33□□□□□ -0.28
PROM1-213ENST00000512304 PRIM1P49642 420 aaKnown RBP13.33□□□□□ -0.28
PROM1-213ENST00000512304 DNAJC5GQ8N7S2 189 aa13.33□□□□□ -0.28
PROM1-213ENST00000512304 AKAP12Q02952 1782 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms