RNA–Protein interactions for RNA: ENST00000512130.5

LINC01088-209, Transcript of long intergenic non-protein coding RNA 1088, human

TSL 3

Gene LINC01088, Length 525 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC01088-209	ENST00000512130	ERFE	Q4G0M1	354 aa		10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	KANK4	Q5T7N3	995 aa	Predicted RBP	10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	LARP1	Q6PKG0	1096 aa	Known RBP	10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	DEPDC4	Q8N2C3	294 aa		10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	PCDH10	Q9P2E7	1040 aa		10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	CDV3	Q9UKY7	258 aa	Known RBP	10.11	□□□□□ -0.79
LINC01088-209	ENST00000512130	NCOA4	Q13772	614 aa		10.1	□□□□□ -0.79
LINC01088-209	ENST00000512130	PHTF2	Q8N3S3	785 aa		10.1	□□□□□ -0.79
LINC01088-209	ENST00000512130	ANKLE1	Q8NAG6	615 aa		10.1	□□□□□ -0.79
LINC01088-209	ENST00000512130	MKRN1	Q9UHC7	482 aa	Known RBP	10.1	□□□□□ -0.79
LINC01088-209	ENST00000512130	PPEF1	O14829	653 aa	Predicted RBP	10.09	□□□□□ -0.79
LINC01088-209	ENST00000512130	ELOA	Q14241	798 aa	Known RBP	10.09	□□□□□ -0.79
LINC01088-209	ENST00000512130	CCDC125	Q86Z20	511 aa		10.09	□□□□□ -0.79
LINC01088-209	ENST00000512130	DOLK	Q9UPQ8	538 aa		10.09	□□□□□ -0.79
LINC01088-209	ENST00000512130	RNF223	E7ERA6	249 aa		10.08	□□□□□ -0.8
LINC01088-209	ENST00000512130	BRD1	O95696	1058 aa		10.08	□□□□□ -0.8
LINC01088-209	ENST00000512130	SH3BP2	P78314	561 aa		10.08	□□□□□ -0.8
LINC01088-209	ENST00000512130	TRIM50	Q86XT4	487 aa		10.08	□□□□□ -0.8
LINC01088-209	ENST00000512130	FAM196B	A6NMK8	535 aa		10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	RASA1	P20936	1047 aa		10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	TRIM32	Q13049	653 aa		10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	B4GALNT3	Q6L9W6	998 aa		10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	NOVA2	Q9UNW9	492 aa	Known RBP	10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	NOD1	Q9Y239	953 aa		10.07	□□□□□ -0.8
LINC01088-209	ENST00000512130	GIGYF1	O75420	1035 aa	Predicted RBP	10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	ATP1A2	P50993	1020 aa		10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	WNT7B	P56706	349 aa		10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	SIRT1	Q96EB6	747 aa		10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	C1QTNF2	Q9BXJ5	285 aa		10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	CHIC2	Q9UKJ5	165 aa		10.06	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L15	C9J2P7	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L10	C9JJH3	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L13	C9JLJ4	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L12	C9JPN9	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L11	C9JVI0	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L21	D6R901	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L18	D6R9N7	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L22	D6RA61	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L17	D6RBQ6	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L19	D6RCP7	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L20	D6RJB6	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	VARS	P26640	1264 aa	Known RBP	10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP17L24	Q0WX57	530 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	C4orf48	Q5BLP8	95 aa		10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	TRMT44	Q8IYL2	757 aa	Known RBP	10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	RBM19	Q9Y4C8	960 aa	Known RBP	10.05	□□□□□ -0.8
LINC01088-209	ENST00000512130	CD2BP2	O95400	341 aa	Known RBP	10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	RPIA	P49247	311 aa		10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	KCNA1	Q09470	495 aa		10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	OXLD1	Q5BKU9	147 aa		10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	SEPT12	Q8IYM1	358 aa		10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	TRIM52	Q96A61	297 aa		10.04	□□□□□ -0.8
LINC01088-209	ENST00000512130	TRAF7	Q6Q0C0	670 aa		10.03	□□□□□ -0.8
LINC01088-209	ENST00000512130	SPNS2	Q8IVW8	549 aa		10.03	□□□□□ -0.8
LINC01088-209	ENST00000512130	FAM200A	Q8TCP9	573 aa		10.03	□□□□□ -0.8
LINC01088-209	ENST00000512130	CCDC9	Q9Y3X0	531 aa	Known RBP	10.03	□□□□□ -0.8
LINC01088-209	ENST00000512130	USP4	Q13107	963 aa		10.02	□□□□□ -0.81
LINC01088-209	ENST00000512130	PPP1R18	Q6NYC8	613 aa		10.02	□□□□□ -0.81
LINC01088-209	ENST00000512130	OGFOD1	Q8N543	542 aa		10.02	□□□□□ -0.81
LINC01088-209	ENST00000512130	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.02	□□□□□ -0.81
LINC01088-209	ENST00000512130	ESF1	Q9H501	851 aa	Known RBP	10.02	□□□□□ -0.81
LINC01088-209	ENST00000512130	TMEM88B	A6NKF7	163 aa		10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	CRTC2	Q53ET0	693 aa	Predicted RBP	10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	EHBP1	Q8NDI1	1231 aa		10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	KCTD15	Q96SI1	283 aa	Predicted RBP	10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	DNAAF2	Q9NVR5	837 aa	Known RBP	10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	PCDHB11	Q9Y5F2	797 aa		10.01	□□□□□ -0.81
LINC01088-209	ENST00000512130	ESPN	B1AK53	854 aa		10	□□□□□ -0.81
LINC01088-209	ENST00000512130	PTK7	Q13308	1070 aa		10	□□□□□ -0.81
LINC01088-209	ENST00000512130	PLA2G2C	Q5R387	149 aa		10	□□□□□ -0.81
LINC01088-209	ENST00000512130	TMEM164	Q5U3C3	297 aa		10	□□□□□ -0.81
LINC01088-209	ENST00000512130	VASH1	Q7L8A9	365 aa	Predicted RBP	10	□□□□□ -0.81
LINC01088-209	ENST00000512130	ZMIZ1	Q9ULJ6	1067 aa		10	□□□□□ -0.81
LINC01088-209	ENST00000512130	CARNS1	A5YM72	827 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	MYC	P01106	439 aa	Predicted RBP	9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	RAB15	P59190	212 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	TSGA10IP	Q3SY00	556 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	ANKMY2	Q8IV38	441 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	LARGE2	Q8N3Y3	721 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	STK32A	Q8WU08	396 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	ZNF594	Q96JF6	807 aa	Predicted RBP	9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	MAP4K5	Q9Y4K4	846 aa		9.99	□□□□□ -0.81
LINC01088-209	ENST00000512130	GTF2I	P78347	998 aa		9.98	□□□□□ -0.81
LINC01088-209	ENST00000512130	PSME1	Q06323	249 aa		9.98	□□□□□ -0.81
LINC01088-209	ENST00000512130	SKOR1	P84550	965 aa		9.97	□□□□□ -0.81
LINC01088-209	ENST00000512130	DPYD	Q12882	1025 aa		9.97	□□□□□ -0.81
LINC01088-209	ENST00000512130	ARID5B	Q14865	1188 aa		9.97	□□□□□ -0.81
LINC01088-209	ENST00000512130	GZF1	Q9H116	711 aa	Predicted RBP	9.97	□□□□□ -0.81
LINC01088-209	ENST00000512130	RC3H1	Q5TC82	1133 aa	Known RBP	9.96	□□□□□ -0.82
LINC01088-209	ENST00000512130	CLDN10	P78369	228 aa		9.95	□□□□□ -0.82
LINC01088-209	ENST00000512130	SEC13	P55735	322 aa		9.94	□□□□□ -0.82
LINC01088-209	ENST00000512130	DHX9	Q08211	1270 aa	Known RBP	9.94	□□□□□ -0.82
LINC01088-209	ENST00000512130	SWI5	Q1ZZU3	235 aa		9.94	□□□□□ -0.82
LINC01088-209	ENST00000512130	TMCO4	Q5TGY1	634 aa		9.94	□□□□□ -0.82
LINC01088-209	ENST00000512130	INTS6L	Q5JSJ4	861 aa	Known RBP	9.93	□□□□□ -0.82
LINC01088-209	ENST00000512130	CCDC102B	Q68D86	513 aa		9.93	□□□□□ -0.82
LINC01088-209	ENST00000512130	SIX5	Q8N196	739 aa		9.93	□□□□□ -0.82
LINC01088-209	ENST00000512130	TPCN2	Q8NHX9	752 aa		9.92	□□□□□ -0.82

Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms