RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 KCNH5Q8NCM2 988 aa18.47■□□□□ 0.55
HMGCS1-205ENST00000508319 AXIN2Q9Y2T1 843 aa18.47■□□□□ 0.55
HMGCS1-205ENST00000508319 RREB1Q92766 1687 aa18.47■□□□□ 0.55
HMGCS1-205ENST00000508319 TRIM37O94972 964 aa18.46■□□□□ 0.55
HMGCS1-205ENST00000508319 PDE3BQ13370 1112 aa18.46■□□□□ 0.55
HMGCS1-205ENST00000508319 WDR17Q8IZU2 1322 aa18.46■□□□□ 0.55
HMGCS1-205ENST00000508319 USP31Q70CQ4 1352 aa18.45■□□□□ 0.54
HMGCS1-205ENST00000508319 LTN1O94822 1766 aa18.45■□□□□ 0.54
HMGCS1-205ENST00000508319 NUP188Q5SRE5 1749 aa18.44■□□□□ 0.54
HMGCS1-205ENST00000508319 SOX12O15370 315 aa18.44■□□□□ 0.54
HMGCS1-205ENST00000508319 EZH2Q15910 746 aaKnown RBP18.44■□□□□ 0.54
HMGCS1-205ENST00000508319 A0A1W2PP64 1363 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 PARD3Q8TEW0 1356 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 OVOS2A0A0G2JMS6 1433 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 OVOS2A0A0J9YW53 1432 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 OVOS2Q6IE36 1432 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 EDC4Q6P2E9 1401 aaKnown RBP18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 PSDA5PKW4 1024 aaPredicted RBP18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 TOM1L2Q6ZVM7 507 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 CAMKK2Q96RR4 588 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 TESK2Q96S53 571 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 SBF2Q86WG5 1849 aa18.43■□□□□ 0.54
HMGCS1-205ENST00000508319 TMC1Q8TDI8 760 aa18.42■□□□□ 0.54
HMGCS1-205ENST00000508319 SLC12A5Q9H2X9 1139 aa18.42■□□□□ 0.54
HMGCS1-205ENST00000508319 NME9Q86XW9 330 aa18.41■□□□□ 0.54
HMGCS1-205ENST00000508319 PUS7Q96PZ0 661 aaKnown RBP18.41■□□□□ 0.54
HMGCS1-205ENST00000508319 APBA3O96018 575 aa18.4■□□□□ 0.54
HMGCS1-205ENST00000508319 HDGFL2Q7Z4V5 671 aaPredicted RBP18.4■□□□□ 0.54
HMGCS1-205ENST00000508319 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
HMGCS1-205ENST00000508319 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
HMGCS1-205ENST00000508319 ST20-MTHFSA0A0A6YYL1 179 aa18.39■□□□□ 0.53
HMGCS1-205ENST00000508319 NINLQ9Y2I6 1382 aa18.39■□□□□ 0.53
HMGCS1-205ENST00000508319 ADRA2BP18089 450 aa18.38■□□□□ 0.53
HMGCS1-205ENST00000508319 DDB1Q16531 1140 aa18.38■□□□□ 0.53
HMGCS1-205ENST00000508319 CARD10Q9BWT7 1032 aa18.38■□□□□ 0.53
HMGCS1-205ENST00000508319 R3HDM1Q15032 1099 aaKnown RBP18.37■□□□□ 0.53
HMGCS1-205ENST00000508319 TERF2IPQ9NYB0 399 aa18.37■□□□□ 0.53
HMGCS1-205ENST00000508319 C11orf95C9JLR9 678 aaPredicted RBP18.36■□□□□ 0.53
HMGCS1-205ENST00000508319 BCL9O00512 1426 aa18.36■□□□□ 0.53
HMGCS1-205ENST00000508319 CSB-PGBD3P0DP91 1061 aa18.36■□□□□ 0.53
HMGCS1-205ENST00000508319 CCDC7Q96M83 1385 aa18.36■□□□□ 0.53
HMGCS1-205ENST00000508319 CDCA7Q9BWT1 371 aaPredicted RBP18.36■□□□□ 0.53
HMGCS1-205ENST00000508319 TNS2Q63HR2 1409 aa18.35■□□□□ 0.53
HMGCS1-205ENST00000508319 USP47Q96K76 1375 aa18.35■□□□□ 0.53
HMGCS1-205ENST00000508319 ERBB3P21860 1342 aa18.35■□□□□ 0.53
HMGCS1-205ENST00000508319 MARCH10Q8NA82 808 aaPredicted RBP18.33■□□□□ 0.52
HMGCS1-205ENST00000508319 FAM208AQ9UK61 1670 aaKnown RBP18.31■□□□□ 0.52
HMGCS1-205ENST00000508319 ANKRD36BQ8N2N9 1353 aa18.31■□□□□ 0.52
HMGCS1-205ENST00000508319 SLC24A1O60721 1099 aa18.31■□□□□ 0.52
HMGCS1-205ENST00000508319 PTF1AQ7RTS3 328 aa18.3■□□□□ 0.52
HMGCS1-205ENST00000508319 NHSQ6T4R5 1651 aa18.29■□□□□ 0.52
HMGCS1-205ENST00000508319 BCL11BQ9C0K0 894 aaPredicted RBP18.29■□□□□ 0.52
HMGCS1-205ENST00000508319 MYOM1P52179 1685 aa18.28■□□□□ 0.52
HMGCS1-205ENST00000508319 PLSCR1O15162 318 aa18.28■□□□□ 0.52
HMGCS1-205ENST00000508319 ANKRD24Q8TF21 1146 aa18.28■□□□□ 0.52
HMGCS1-205ENST00000508319 NLRP2Q9NX02 1062 aa18.28■□□□□ 0.52
HMGCS1-205ENST00000508319 KIF20BQ96Q89 1820 aa18.26■□□□□ 0.51
HMGCS1-205ENST00000508319 EXOC5O00471 708 aa18.26■□□□□ 0.51
HMGCS1-205ENST00000508319 TMF1P82094 1093 aa18.26■□□□□ 0.51
HMGCS1-205ENST00000508319 IP6K1Q92551 441 aa18.25■□□□□ 0.51
HMGCS1-205ENST00000508319 COG3Q96JB2 828 aa18.25■□□□□ 0.51
HMGCS1-205ENST00000508319 IL2RBP14784 551 aa18.24■□□□□ 0.51
HMGCS1-205ENST00000508319 NBPF14Q5TI25 921 aa18.24■□□□□ 0.51
HMGCS1-205ENST00000508319 RGPD2P0DJD1 1756 aa18.24■□□□□ 0.51
HMGCS1-205ENST00000508319 CASZ1Q86V15 1759 aa18.24■□□□□ 0.51
HMGCS1-205ENST00000508319 MAP3K19Q56UN5 1328 aa18.23■□□□□ 0.51
HMGCS1-205ENST00000508319 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
HMGCS1-205ENST00000508319 ANO8Q9HCE9 1232 aaPredicted RBP18.22■□□□□ 0.51
HMGCS1-205ENST00000508319 TIMELESSQ9UNS1 1208 aa18.22■□□□□ 0.51
HMGCS1-205ENST00000508319 BTAF1O14981 1849 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 SHANK3Q9BYB0 1731 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 RTL1A6NKG5 1358 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 FBLN1P23142 703 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 HOXC9P31274 260 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 PROM2Q8N271 834 aa18.21■□□□□ 0.51
HMGCS1-205ENST00000508319 FYB1O15117 783 aa18.2■□□□□ 0.5
HMGCS1-205ENST00000508319 KCNQ2O43526 872 aa18.2■□□□□ 0.5
HMGCS1-205ENST00000508319 LTV1Q96GA3 475 aaPredicted RBP18.19■□□□□ 0.5
HMGCS1-205ENST00000508319 GGNBP2Q9H3C7 697 aa18.19■□□□□ 0.5
HMGCS1-205ENST00000508319 CDCA8Q53HL2 280 aa18.18■□□□□ 0.5
HMGCS1-205ENST00000508319 PCGF6Q9BYE7 350 aa18.18■□□□□ 0.5
HMGCS1-205ENST00000508319 PAPPAQ13219 1627 aa18.18■□□□□ 0.5
HMGCS1-205ENST00000508319 TXNRD1Q16881 649 aa18.17■□□□□ 0.5
HMGCS1-205ENST00000508319 ACSBG1Q96GR2 724 aa18.17■□□□□ 0.5
HMGCS1-205ENST00000508319 MEGF6O75095 1541 aa18.17■□□□□ 0.5
HMGCS1-205ENST00000508319 KAT6BQ8WYB5 2073 aa18.16■□□□□ 0.5
HMGCS1-205ENST00000508319 DOT1LQ8TEK3 1739 aa18.16■□□□□ 0.5
HMGCS1-205ENST00000508319 AMPHP49418 695 aa18.16■□□□□ 0.5
HMGCS1-205ENST00000508319 RRS1Q15050 365 aaKnown RBP18.16■□□□□ 0.5
HMGCS1-205ENST00000508319 NSD3Q9BZ95 1437 aa18.15■□□□□ 0.5
HMGCS1-205ENST00000508319 ANKRD26Q9UPS8 1709 aa18.15■□□□□ 0.5
HMGCS1-205ENST00000508319 CARD14Q9BXL6 1004 aa18.13■□□□□ 0.49
HMGCS1-205ENST00000508319 PDGFDQ9GZP0 370 aaPredicted RBP18.13■□□□□ 0.49
HMGCS1-205ENST00000508319 SPON1Q9HCB6 807 aa18.13■□□□□ 0.49
HMGCS1-205ENST00000508319 FLT4P35916 1363 aa18.12■□□□□ 0.49
HMGCS1-205ENST00000508319 SMG6Q86US8 1419 aaKnown RBP18.12■□□□□ 0.49
HMGCS1-205ENST00000508319 KIF24Q5T7B8 1368 aa18.11■□□□□ 0.49
HMGCS1-205ENST00000508319 INSRP06213 1382 aa18.1■□□□□ 0.49
HMGCS1-205ENST00000508319 SLC15A2Q16348 729 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms