RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 RBM6P78332 1123 aaKnown RBP25.06■■□□□ 1.6
NPHP4-210ENST00000506941 VPS72Q15906 364 aa25.06■■□□□ 1.6
NPHP4-210ENST00000506941 RGS12O14924 1447 aa25.05■■□□□ 1.6
NPHP4-210ENST00000506941 PEAK1Q9H792 1746 aa25.05■■□□□ 1.6
NPHP4-210ENST00000506941 FBLN1P23142 703 aa25.04■■□□□ 1.6
NPHP4-210ENST00000506941 GJD4Q96KN9 370 aaPredicted RBP25.04■■□□□ 1.6
NPHP4-210ENST00000506941 AXIN2Q9Y2T1 843 aa25.04■■□□□ 1.6
NPHP4-210ENST00000506941 WNK3Q9BYP7 1800 aa25.03■■□□□ 1.6
NPHP4-210ENST00000506941 STRN4Q9NRL3 753 aa25.02■■□□□ 1.6
NPHP4-210ENST00000506941 RGPD2P0DJD1 1756 aa25.01■■□□□ 1.59
NPHP4-210ENST00000506941 CCDC9Q9Y3X0 531 aaKnown RBP25■■□□□ 1.59
NPHP4-210ENST00000506941 SPATA31A5Q5VU36 1347 aa24.99■■□□□ 1.59
NPHP4-210ENST00000506941 SPATA31A7Q8IWB4 1347 aa24.99■■□□□ 1.59
NPHP4-210ENST00000506941 THSD7AQ9UPZ6 1657 aa24.99■■□□□ 1.59
NPHP4-210ENST00000506941 FAM208AQ9UK61 1670 aaKnown RBP24.98■■□□□ 1.59
NPHP4-210ENST00000506941 MAP3K19Q56UN5 1328 aa24.98■■□□□ 1.59
NPHP4-210ENST00000506941 LARP1Q6PKG0 1096 aaKnown RBP24.98■■□□□ 1.59
NPHP4-210ENST00000506941 NSD2O96028 1365 aa24.97■■□□□ 1.59
NPHP4-210ENST00000506941 PER1O15534 1290 aaPredicted RBP24.97■■□□□ 1.59
NPHP4-210ENST00000506941 EVA1CP58658 441 aa24.97■■□□□ 1.59
NPHP4-210ENST00000506941 KNSTRNQ9Y448 316 aa24.97■■□□□ 1.59
NPHP4-210ENST00000506941 SPATA31A1Q5TZJ5 1347 aa24.96■■□□□ 1.59
NPHP4-210ENST00000506941 RRS1Q15050 365 aaKnown RBP24.96■■□□□ 1.59
NPHP4-210ENST00000506941 AMER1Q5JTC6 1135 aaPredicted RBP24.95■■□□□ 1.58
NPHP4-210ENST00000506941 EP400Q96L91 3159 aa24.95■■□□□ 1.58
NPHP4-210ENST00000506941 CRB1P82279 1406 aa24.95■■□□□ 1.58
NPHP4-210ENST00000506941 BLMP54132 1417 aaPredicted RBP24.94■■□□□ 1.58
NPHP4-210ENST00000506941 RTL1A6NKG5 1358 aa24.93■■□□□ 1.58
NPHP4-210ENST00000506941 WDR17Q8IZU2 1322 aa24.92■■□□□ 1.58
NPHP4-210ENST00000506941 IP6K1Q92551 441 aa24.92■■□□□ 1.58
NPHP4-210ENST00000506941 PARP4Q9UKK3 1724 aaKnown RBP24.92■■□□□ 1.58
NPHP4-210ENST00000506941 HOXC9P31274 260 aa24.91■■□□□ 1.58
NPHP4-210ENST00000506941 FAM98CQ17RN3 349 aaKnown RBP24.91■■□□□ 1.58
NPHP4-210ENST00000506941 ERBB3P21860 1342 aa24.9■■□□□ 1.58
NPHP4-210ENST00000506941 ONECUT3O60422 494 aaPredicted RBP24.9■■□□□ 1.58
NPHP4-210ENST00000506941 USP35Q9P2H5 1018 aa24.9■■□□□ 1.58
NPHP4-210ENST00000506941 AMPHP49418 695 aa24.89■■□□□ 1.58
NPHP4-210ENST00000506941 EMILIN1Q9Y6C2 1016 aa24.89■■□□□ 1.58
NPHP4-210ENST00000506941 TNNT2P45379 298 aaPredicted RBP24.88■■□□□ 1.57
NPHP4-210ENST00000506941 TOM1L2Q6ZVM7 507 aa24.87■■□□□ 1.57
NPHP4-210ENST00000506941 SEPT12Q8IYM1 358 aa24.87■■□□□ 1.57
NPHP4-210ENST00000506941 ANKRD24Q8TF21 1146 aa24.87■■□□□ 1.57
NPHP4-210ENST00000506941 FLT4P35916 1363 aa24.87■■□□□ 1.57
NPHP4-210ENST00000506941 KIF24Q5T7B8 1368 aa24.87■■□□□ 1.57
NPHP4-210ENST00000506941 LRRC37A3O60309 1634 aa24.86■■□□□ 1.57
NPHP4-210ENST00000506941 NPC1L1Q9UHC9 1359 aa24.86■■□□□ 1.57
NPHP4-210ENST00000506941 CSB-PGBD3P0DP91 1061 aa24.86■■□□□ 1.57
NPHP4-210ENST00000506941 TCP11L2Q8N4U5 519 aa24.86■■□□□ 1.57
NPHP4-210ENST00000506941 MORC1Q86VD1 984 aa24.85■■□□□ 1.57
NPHP4-210ENST00000506941 SMG6Q86US8 1419 aaKnown RBP24.85■■□□□ 1.57
NPHP4-210ENST00000506941 CC2D1BQ5T0F9 858 aaKnown RBP24.84■■□□□ 1.57
NPHP4-210ENST00000506941 BARGINQ6ZT62 677 aa24.84■■□□□ 1.57
NPHP4-210ENST00000506941 POLKQ9UBT6 870 aa24.84■■□□□ 1.57
NPHP4-210ENST00000506941 INSRP06213 1382 aa24.83■■□□□ 1.57
NPHP4-210ENST00000506941 LTV1Q96GA3 475 aaPredicted RBP24.83■■□□□ 1.57
NPHP4-210ENST00000506941 CARD10Q9BWT7 1032 aa24.83■■□□□ 1.57
NPHP4-210ENST00000506941 SOCS7O14512 581 aa24.82■■□□□ 1.56
NPHP4-210ENST00000506941 HSP90AB2PQ58FF8 381 aa24.82■■□□□ 1.56
NPHP4-210ENST00000506941 THRAP3Q9Y2W1 955 aaKnown RBP24.82■■□□□ 1.56
NPHP4-210ENST00000506941 DISP2A7MBM2 1401 aa24.81■■□□□ 1.56
NPHP4-210ENST00000506941 A0A0G2JS52 829 aa24.81■■□□□ 1.56
NPHP4-210ENST00000506941 MYT1Q01538 1121 aa24.81■■□□□ 1.56
NPHP4-210ENST00000506941 PPM1GO15355 546 aaPredicted RBP24.8■■□□□ 1.56
NPHP4-210ENST00000506941 NLRP2Q9NX02 1062 aa24.8■■□□□ 1.56
NPHP4-210ENST00000506941 CNGB1Q14028 1251 aaPredicted RBP24.78■■□□□ 1.56
NPHP4-210ENST00000506941 SHANK3Q9BYB0 1731 aa24.76■■□□□ 1.55
NPHP4-210ENST00000506941 DDX10Q13206 875 aaKnown RBP24.75■■□□□ 1.55
NPHP4-210ENST00000506941 KRT27Q7Z3Y8 459 aa24.75■■□□□ 1.55
NPHP4-210ENST00000506941 SBF2Q86WG5 1849 aa24.74■■□□□ 1.55
NPHP4-210ENST00000506941 RGPD1P0DJD0 1748 aa24.73■■□□□ 1.55
NPHP4-210ENST00000506941 NBPF6Q5VWK0 638 aa24.73■■□□□ 1.55
NPHP4-210ENST00000506941 NBPF4Q96M43 638 aa24.73■■□□□ 1.55
NPHP4-210ENST00000506941 NCAPD2Q15021 1401 aa24.71■■□□□ 1.55
NPHP4-210ENST00000506941 FAM182BQ5T319 152 aa24.7■■□□□ 1.54
NPHP4-210ENST00000506941 USHBP1Q8N6Y0 703 aa24.7■■□□□ 1.54
NPHP4-210ENST00000506941 CDCA7Q9BWT1 371 aaPredicted RBP24.7■■□□□ 1.54
NPHP4-210ENST00000506941 MEGF6O75095 1541 aa24.7■■□□□ 1.54
NPHP4-210ENST00000506941 TNS2Q63HR2 1409 aa24.69■■□□□ 1.54
NPHP4-210ENST00000506941 EIF4A2Q14240 407 aaKnown RBP24.69■■□□□ 1.54
NPHP4-210ENST00000506941 MTHFSP49914 203 aa24.68■■□□□ 1.54
NPHP4-210ENST00000506941 UPF1Q92900 1129 aaKnown RBP eCLIP24.68■■□□□ 1.54
NPHP4-210ENST00000506941 TNS1Q9HBL0 1735 aaKnown RBP24.68■■□□□ 1.54
NPHP4-210ENST00000506941 PKD1L3Q7Z443 1732 aa24.67■■□□□ 1.54
NPHP4-210ENST00000506941 ZNF316A6NFI3 1004 aaPredicted RBP24.67■■□□□ 1.54
NPHP4-210ENST00000506941 IL2RBP14784 551 aa24.67■■□□□ 1.54
NPHP4-210ENST00000506941 DDB1Q16531 1140 aa24.67■■□□□ 1.54
NPHP4-210ENST00000506941 COL3A1P02461 1466 aaPredicted RBP24.66■■□□□ 1.54
NPHP4-210ENST00000506941 PDE3BQ13370 1112 aa24.65■■□□□ 1.54
NPHP4-210ENST00000506941 PARD3Q8TEW0 1356 aa24.65■■□□□ 1.54
NPHP4-210ENST00000506941 OVOS2A0A0G2JMS6 1433 aa24.64■■□□□ 1.54
NPHP4-210ENST00000506941 EYA1Q99502 592 aa24.64■■□□□ 1.54
NPHP4-210ENST00000506941 KAT6BQ8WYB5 2073 aa24.62■■□□□ 1.53
NPHP4-210ENST00000506941 PPP2R1AP30153 589 aa24.61■■□□□ 1.53
NPHP4-210ENST00000506941 MARCH10Q8NA82 808 aaPredicted RBP24.61■■□□□ 1.53
NPHP4-210ENST00000506941 IGSF1Q8N6C5 1336 aa24.61■■□□□ 1.53
NPHP4-210ENST00000506941 EXOC5O00471 708 aa24.6■■□□□ 1.53
NPHP4-210ENST00000506941 IL13P35225 146 aa24.59■■□□□ 1.53
NPHP4-210ENST00000506941 NHSQ6T4R5 1651 aa24.57■■□□□ 1.52
NPHP4-210ENST00000506941 FAM196AQ6ZSG2 479 aa24.57■■□□□ 1.52
NPHP4-210ENST00000506941 RAPGEF4Q8WZA2 1011 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms