RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 POTEBQ6S5H4 581 aa13.94□□□□□ -0.18
CLCN3-205ENST00000506924 POTEEQ6S8J3 1075 aa13.94□□□□□ -0.18
CLCN3-205ENST00000506924 RIMS2Q9UQ26 1411 aa13.94□□□□□ -0.18
CLCN3-205ENST00000506924 IQGAP1P46940 1657 aa13.94□□□□□ -0.18
CLCN3-205ENST00000506924 FECHP22830 423 aa13.93□□□□□ -0.18
CLCN3-205ENST00000506924 PADI6Q6TGC4 694 aa13.93□□□□□ -0.18
CLCN3-205ENST00000506924 ZBED2Q9BTP6 218 aa13.93□□□□□ -0.18
CLCN3-205ENST00000506924 MED14O60244 1454 aa13.93□□□□□ -0.18
CLCN3-205ENST00000506924 ACIN1Q9UKV3 1341 aaKnown RBP13.92□□□□□ -0.18
CLCN3-205ENST00000506924 TRIM6-TRIM34B2RNG4 842 aa13.92□□□□□ -0.18
CLCN3-205ENST00000506924 HRCP23327 699 aa13.92□□□□□ -0.18
CLCN3-205ENST00000506924 POTEGQ6S5H5 508 aa13.92□□□□□ -0.18
CLCN3-205ENST00000506924 SLC26A8Q96RN1 970 aa13.92□□□□□ -0.18
CLCN3-205ENST00000506924 KIF1BO60333 1816 aa13.92□□□□□ -0.18
CLCN3-205ENST00000506924 ZFYVE9O95405 1425 aa13.91□□□□□ -0.18
CLCN3-205ENST00000506924 OATP04181 439 aa13.9□□□□□ -0.18
CLCN3-205ENST00000506924 PSEN2P49810 448 aa13.9□□□□□ -0.18
CLCN3-205ENST00000506924 RGL3Q3MIN7 710 aa13.9□□□□□ -0.18
CLCN3-205ENST00000506924 CCDC102AQ96A19 550 aa13.9□□□□□ -0.18
CLCN3-205ENST00000506924 CCDC144AA2RUR9 1427 aa13.9□□□□□ -0.19
CLCN3-205ENST00000506924 TK2O00142 265 aa13.89□□□□□ -0.19
CLCN3-205ENST00000506924 HDGFP51858 240 aaKnown RBP13.89□□□□□ -0.19
CLCN3-205ENST00000506924 PACS2Q86VP3 889 aa13.88□□□□□ -0.19
CLCN3-205ENST00000506924 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLCN3-205ENST00000506924 LTBP4Q8N2S1 1624 aa13.88□□□□□ -0.19
CLCN3-205ENST00000506924 TSKSQ9UJT2 592 aa13.87□□□□□ -0.19
CLCN3-205ENST00000506924 ADGRG1Q9Y653 693 aa13.87□□□□□ -0.19
CLCN3-205ENST00000506924 NBPF26B4DH59 902 aa13.86□□□□□ -0.19
CLCN3-205ENST00000506924 NEXMIFQ5QGS0 1516 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 ANKRD30BQ9BXX2 1392 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 PLEKHG1Q9ULL1 1385 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 TRIM66O15016 1216 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 RABGEF1Q9UJ41 708 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 AXIN2Q9Y2T1 843 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 STRCP1A6NGW2 1772 aa13.85□□□□□ -0.19
CLCN3-205ENST00000506924 AMHR2Q16671 573 aa13.84□□□□□ -0.19
CLCN3-205ENST00000506924 DMRTA1Q5VZB9 504 aa13.84□□□□□ -0.19
CLCN3-205ENST00000506924 RBM46Q8TBY0 533 aaKnown RBP13.84□□□□□ -0.19
CLCN3-205ENST00000506924 PCGF6Q9BYE7 350 aa13.84□□□□□ -0.19
CLCN3-205ENST00000506924 FAM198AQ9UFP1 575 aa13.84□□□□□ -0.19
CLCN3-205ENST00000506924 LSM11P83369 360 aaKnown RBP eCLIP13.83□□□□□ -0.2
CLCN3-205ENST00000506924 VPS9D1Q9Y2B5 631 aa13.83□□□□□ -0.2
CLCN3-205ENST00000506924 SPATA31E1Q6ZUB1 1445 aa13.82□□□□□ -0.2
CLCN3-205ENST00000506924 PROX2Q3B8N5 592 aa13.82□□□□□ -0.2
CLCN3-205ENST00000506924 METTL3Q86U44 580 aaKnown RBP13.82□□□□□ -0.2
CLCN3-205ENST00000506924 PXYLP1Q8TE99 480 aa13.82□□□□□ -0.2
CLCN3-205ENST00000506924 ADAMTS13Q76LX8 1427 aa13.81□□□□□ -0.2
CLCN3-205ENST00000506924 PPLO60437 1756 aa13.81□□□□□ -0.2
CLCN3-205ENST00000506924 TATDN2Q93075 761 aa13.8□□□□□ -0.2
CLCN3-205ENST00000506924 TBX22Q9Y458 520 aa13.8□□□□□ -0.2
CLCN3-205ENST00000506924 RPGRIP1LQ68CZ1 1315 aa13.8□□□□□ -0.2
CLCN3-205ENST00000506924 ADGRF5Q8IZF2 1346 aa13.8□□□□□ -0.2
CLCN3-205ENST00000506924 NRXN3Q9Y4C0 1643 aa13.79□□□□□ -0.2
CLCN3-205ENST00000506924 KCNA6P17658 529 aa13.79□□□□□ -0.2
CLCN3-205ENST00000506924 EYA1Q99502 592 aa13.79□□□□□ -0.2
CLCN3-205ENST00000506924 KIAA1468Q9P260 1216 aa13.79□□□□□ -0.2
CLCN3-205ENST00000506924 CPS1P31327 1500 aa13.79□□□□□ -0.2
CLCN3-205ENST00000506924 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.78□□□□□ -0.2
CLCN3-205ENST00000506924 PDE4DQ08499 809 aa13.78□□□□□ -0.2
CLCN3-205ENST00000506924 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
CLCN3-205ENST00000506924 PLSCR2Q9NRY7 297 aa13.78□□□□□ -0.2
CLCN3-205ENST00000506924 METP08581 1390 aa13.77□□□□□ -0.21
CLCN3-205ENST00000506924 DHX57Q6P158 1386 aaKnown RBP13.77□□□□□ -0.21
CLCN3-205ENST00000506924 LAPTM4BQ86VI4 370 aa13.77□□□□□ -0.21
CLCN3-205ENST00000506924 PROSER2Q86WR7 435 aaPredicted RBP13.77□□□□□ -0.21
CLCN3-205ENST00000506924 LRRC7Q96NW7 1537 aa13.77□□□□□ -0.21
CLCN3-205ENST00000506924 SIN3AQ96ST3 1273 aa13.77□□□□□ -0.21
CLCN3-205ENST00000506924 SETBP1Q9Y6X0 1596 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 BHMG1C9JSJ3 638 aaPredicted RBP13.76□□□□□ -0.21
CLCN3-205ENST00000506924 NEUROD1Q13562 356 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 ADGRD1Q6QNK2 874 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 NUDT18Q6ZVK8 323 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 FBXO41Q8TF61 875 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 PNMA3Q9UL41 463 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 CHD2O14647 1828 aaKnown RBP13.76□□□□□ -0.21
CLCN3-205ENST00000506924 IFT172Q9UG01 1749 aa13.76□□□□□ -0.21
CLCN3-205ENST00000506924 PTPRUQ92729 1446 aa13.75□□□□□ -0.21
CLCN3-205ENST00000506924 UBAP1LF5GYI3 381 aa13.75□□□□□ -0.21
CLCN3-205ENST00000506924 DCAF11Q8TEB1 546 aa13.75□□□□□ -0.21
CLCN3-205ENST00000506924 AMOTL2Q9Y2J4 779 aa13.75□□□□□ -0.21
CLCN3-205ENST00000506924 DIP2AQ14689 1571 aa13.75□□□□□ -0.21
CLCN3-205ENST00000506924 TMEM94Q12767 1356 aa13.73□□□□□ -0.21
CLCN3-205ENST00000506924 ALKQ9UM73 1620 aa13.73□□□□□ -0.21
CLCN3-205ENST00000506924 CLCN1P35523 988 aa13.73□□□□□ -0.21
CLCN3-205ENST00000506924 BRPF1P55201 1214 aaPredicted RBP13.73□□□□□ -0.21
CLCN3-205ENST00000506924 XIRP1Q702N8 1843 aaKnown RBP13.73□□□□□ -0.21
CLCN3-205ENST00000506924 NWD1Q149M9 1564 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 DNAJB2P25686 324 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 FAM161AQ3B820 660 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 PHOX2BQ99453 314 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 KRTAP3-3Q9BYR6 98 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 KRTAP3-2Q9BYR7 98 aa13.72□□□□□ -0.21
CLCN3-205ENST00000506924 HRO43593 1189 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 FAM98CQ17RN3 349 aaKnown RBP13.71□□□□□ -0.21
CLCN3-205ENST00000506924 TMEM132EQ6IEE7 984 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 TMUB1Q9BVT8 246 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 PCDH10Q9P2E7 1040 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 IQSEC2Q5JU85 1478 aa13.71□□□□□ -0.21
CLCN3-205ENST00000506924 SETD1AO15047 1707 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms