RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 TOM1L2Q6ZVM7 507 aa16.84■□□□□ 0.29
MED28-203ENST00000503945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.84■□□□□ 0.29
MED28-203ENST00000503945 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
MED28-203ENST00000503945 TERF2IPQ9NYB0 399 aa16.84■□□□□ 0.29
MED28-203ENST00000503945 ST20-MTHFSA0A0A6YYL1 179 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 C11orf95C9JLR9 678 aaPredicted RBP16.83■□□□□ 0.28
MED28-203ENST00000503945 SOX12O15370 315 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 SLIT3O75094 1523 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 DDB1Q16531 1140 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 PTF1AQ7RTS3 328 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 RGPD5Q99666 1765 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 PCGF6Q9BYE7 350 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 PEAK1Q9H792 1746 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 SBNO2Q9Y2G9 1366 aa16.83■□□□□ 0.28
MED28-203ENST00000503945 PLSCR1O15162 318 aa16.82■□□□□ 0.28
MED28-203ENST00000503945 ARHGEF25Q86VW2 580 aa16.82■□□□□ 0.28
MED28-203ENST00000503945 KCNQ2O43526 872 aa16.81■□□□□ 0.28
MED28-203ENST00000503945 SPON1Q9HCB6 807 aa16.81■□□□□ 0.28
MED28-203ENST00000503945 PIK3C2AO00443 1686 aa16.81■□□□□ 0.28
MED28-203ENST00000503945 OVOS2A0A0G2JMS6 1433 aa16.8■□□□□ 0.28
MED28-203ENST00000503945 OVOS2A0A0J9YW53 1432 aa16.8■□□□□ 0.28
MED28-203ENST00000503945 CPSF1Q10570 1443 aaKnown RBP16.8■□□□□ 0.28
MED28-203ENST00000503945 OVOS2Q6IE36 1432 aa16.8■□□□□ 0.28
MED28-203ENST00000503945 MARCH10Q8NA82 808 aaPredicted RBP16.8■□□□□ 0.28
MED28-203ENST00000503945 TIMELESSQ9UNS1 1208 aa16.8■□□□□ 0.28
MED28-203ENST00000503945 WDR17Q8IZU2 1322 aa16.79■□□□□ 0.28
MED28-203ENST00000503945 CSB-PGBD3P0DP91 1061 aa16.79■□□□□ 0.28
MED28-203ENST00000503945 PROM2Q8N271 834 aa16.79■□□□□ 0.28
MED28-203ENST00000503945 BCL11BQ9C0K0 894 aaPredicted RBP16.79■□□□□ 0.28
MED28-203ENST00000503945 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
MED28-203ENST00000503945 PPP1R1BQ9UD71 204 aaPredicted RBP16.78■□□□□ 0.28
MED28-203ENST00000503945 TESK2Q96S53 571 aa16.77■□□□□ 0.28
MED28-203ENST00000503945 WNK3Q9BYP7 1800 aa16.77■□□□□ 0.27
MED28-203ENST00000503945 AKAP12Q02952 1782 aa16.77■□□□□ 0.27
MED28-203ENST00000503945 NME9Q86XW9 330 aa16.76■□□□□ 0.27
MED28-203ENST00000503945 CDCA7Q9BWT1 371 aaPredicted RBP16.76■□□□□ 0.27
MED28-203ENST00000503945 CARD10Q9BWT7 1032 aa16.76■□□□□ 0.27
MED28-203ENST00000503945 ANO8Q9HCE9 1232 aaPredicted RBP16.76■□□□□ 0.27
MED28-203ENST00000503945 RGPD3A6NKT7 1758 aaPredicted RBP16.75■□□□□ 0.27
MED28-203ENST00000503945 RGPD4Q7Z3J3 1758 aa16.75■□□□□ 0.27
MED28-203ENST00000503945 YY1P25490 414 aa16.75■□□□□ 0.27
MED28-203ENST00000503945 TMF1P82094 1093 aa16.75■□□□□ 0.27
MED28-203ENST00000503945 PDGFDQ9GZP0 370 aaPredicted RBP16.75■□□□□ 0.27
MED28-203ENST00000503945 EXOC5O00471 708 aa16.74■□□□□ 0.27
MED28-203ENST00000503945 CDCA8Q53HL2 280 aa16.73■□□□□ 0.27
MED28-203ENST00000503945 USP31Q70CQ4 1352 aa16.73■□□□□ 0.27
MED28-203ENST00000503945 CLSPNQ9HAW4 1339 aa16.72■□□□□ 0.27
MED28-203ENST00000503945 BCL9O00512 1426 aa16.72■□□□□ 0.27
MED28-203ENST00000503945 CASZ1Q86V15 1759 aa16.71■□□□□ 0.27
MED28-203ENST00000503945 KAT6BQ8WYB5 2073 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 NINLQ9Y2I6 1382 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 ZBTB7AO95365 584 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 TXNRD1Q16881 649 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 COG3Q96JB2 828 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 NFAT5O94916 1531 aa16.7■□□□□ 0.26
MED28-203ENST00000503945 DCAF8L1A6NGE4 600 aa16.69■□□□□ 0.26
MED28-203ENST00000503945 NLRP2Q9NX02 1062 aa16.69■□□□□ 0.26
MED28-203ENST00000503945 ATF5Q9Y2D1 282 aaPredicted RBP16.69■□□□□ 0.26
MED28-203ENST00000503945 EDC4Q6P2E9 1401 aaKnown RBP16.69■□□□□ 0.26
MED28-203ENST00000503945 A0A1W2PP64 1363 aa16.68■□□□□ 0.26
MED28-203ENST00000503945 STK32BQ9NY57 414 aa16.68■□□□□ 0.26
MED28-203ENST00000503945 CD163L1Q9NR16 1453 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 USP47Q96K76 1375 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 CCDC7Q96M83 1385 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 PTGER2P43116 358 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 SLC15A2Q16348 729 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 MON2Q7Z3U7 1717 aa16.67■□□□□ 0.26
MED28-203ENST00000503945 CCER1Q8TC90 406 aaPredicted RBP16.66■□□□□ 0.26
MED28-203ENST00000503945 IP6K1Q92551 441 aa16.66■□□□□ 0.26
MED28-203ENST00000503945 ACSBG1Q96GR2 724 aa16.66■□□□□ 0.26
MED28-203ENST00000503945 ANKRD24Q8TF21 1146 aa16.65■□□□□ 0.26
MED28-203ENST00000503945 AMPHP49418 695 aa16.64■□□□□ 0.25
MED28-203ENST00000503945 LTN1O94822 1766 aa16.64■□□□□ 0.25
MED28-203ENST00000503945 FYB1O15117 783 aa16.63■□□□□ 0.25
MED28-203ENST00000503945 IL2RBP14784 551 aa16.63■□□□□ 0.25
MED28-203ENST00000503945 LTV1Q96GA3 475 aaPredicted RBP16.63■□□□□ 0.25
MED28-203ENST00000503945 ERBB3P21860 1342 aa16.63■□□□□ 0.25
MED28-203ENST00000503945 MYOM1P52179 1685 aa16.62■□□□□ 0.25
MED28-203ENST00000503945 TNS2Q63HR2 1409 aa16.62■□□□□ 0.25
MED28-203ENST00000503945 ABCC6O95255 1503 aa16.62■□□□□ 0.25
MED28-203ENST00000503945 FBLN1P23142 703 aa16.61■□□□□ 0.25
MED28-203ENST00000503945 USP54Q70EL1 1684 aa16.61■□□□□ 0.25
MED28-203ENST00000503945 ANKRD36BQ8N2N9 1353 aa16.61■□□□□ 0.25
MED28-203ENST00000503945 NHSQ6T4R5 1651 aa16.6■□□□□ 0.25
MED28-203ENST00000503945 SGIP1Q9BQI5 828 aa16.6■□□□□ 0.25
MED28-203ENST00000503945 SYT17Q9BSW7 474 aa16.6■□□□□ 0.25
MED28-203ENST00000503945 FHDC1Q9C0D6 1143 aaPredicted RBP16.6■□□□□ 0.25
MED28-203ENST00000503945 MTFR1LQ9H019 292 aa16.6■□□□□ 0.25
MED28-203ENST00000503945 GGNBP2Q9H3C7 697 aa16.6■□□□□ 0.25
MED28-203ENST00000503945 BTAF1O14981 1849 aa16.59■□□□□ 0.25
MED28-203ENST00000503945 HOXC9P31274 260 aa16.58■□□□□ 0.24
MED28-203ENST00000503945 MAP3K19Q56UN5 1328 aa16.58■□□□□ 0.24
MED28-203ENST00000503945 POLR3GLQ9BT43 218 aa16.57■□□□□ 0.24
MED28-203ENST00000503945 LRRC4BQ9NT99 713 aa16.57■□□□□ 0.24
MED28-203ENST00000503945 EIF4G2P78344 907 aaKnown RBP eCLIP16.56■□□□□ 0.24
MED28-203ENST00000503945 RRS1Q15050 365 aaKnown RBP16.56■□□□□ 0.24
MED28-203ENST00000503945 DDX54Q8TDD1 881 aaKnown RBP16.56■□□□□ 0.24
MED28-203ENST00000503945 ZNF827Q17R98 1081 aa16.55■□□□□ 0.24
MED28-203ENST00000503945 ARXQ96QS3 562 aa16.55■□□□□ 0.24
MED28-203ENST00000503945 CARD14Q9BXL6 1004 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms