RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 GJD4Q96KN9 370 aaPredicted RBP34.45■■■■□ 3.11
LSM6-202ENST00000502781 COL5A2P05997 1499 aaPredicted RBP34.43■■■■□ 3.1
LSM6-202ENST00000502781 MAP3K19Q56UN5 1328 aa34.42■■■■□ 3.1
LSM6-202ENST00000502781 ANKRD26Q9UPS8 1709 aa34.41■■■■□ 3.1
LSM6-202ENST00000502781 CDK12Q9NYV4 1490 aaPredicted RBP34.39■■■■□ 3.1
LSM6-202ENST00000502781 NPC1L1Q9UHC9 1359 aa34.39■■■■□ 3.1
LSM6-202ENST00000502781 STRN4Q9NRL3 753 aa34.39■■■■□ 3.1
LSM6-202ENST00000502781 LTN1O94822 1766 aa34.39■■■■□ 3.1
LSM6-202ENST00000502781 GLI3P10071 1580 aa34.39■■■■□ 3.1
LSM6-202ENST00000502781 SPATA31A5Q5VU36 1347 aa34.38■■■■□ 3.09
LSM6-202ENST00000502781 SPATA31A7Q8IWB4 1347 aa34.38■■■■□ 3.09
LSM6-202ENST00000502781 IP6K1Q92551 441 aa34.37■■■■□ 3.09
LSM6-202ENST00000502781 EVA1CP58658 441 aa34.36■■■■□ 3.09
LSM6-202ENST00000502781 RRS1Q15050 365 aaKnown RBP34.36■■■■□ 3.09
LSM6-202ENST00000502781 LARP1Q6PKG0 1096 aaKnown RBP34.36■■■■□ 3.09
LSM6-202ENST00000502781 RTL1A6NKG5 1358 aa34.35■■■■□ 3.09
LSM6-202ENST00000502781 BLMP54132 1417 aaPredicted RBP34.35■■■■□ 3.09
LSM6-202ENST00000502781 KIF24Q5T7B8 1368 aa34.34■■■■□ 3.09
LSM6-202ENST00000502781 SPATA31A1Q5TZJ5 1347 aa34.34■■■■□ 3.09
LSM6-202ENST00000502781 HOXC9P31274 260 aa34.33■■■■□ 3.09
LSM6-202ENST00000502781 CCDC9Q9Y3X0 531 aaKnown RBP34.33■■■■□ 3.09
LSM6-202ENST00000502781 WDR17Q8IZU2 1322 aa34.33■■■■□ 3.09
LSM6-202ENST00000502781 ERBB3P21860 1342 aa34.32■■■■□ 3.08
LSM6-202ENST00000502781 ONECUT3O60422 494 aaPredicted RBP34.31■■■■□ 3.08
LSM6-202ENST00000502781 AMPHP49418 695 aa34.31■■■■□ 3.08
LSM6-202ENST00000502781 MORC1Q86VD1 984 aa34.31■■■■□ 3.08
LSM6-202ENST00000502781 RGS12O14924 1447 aa34.31■■■■□ 3.08
LSM6-202ENST00000502781 CRB1P82279 1406 aa34.31■■■■□ 3.08
LSM6-202ENST00000502781 RGPD5Q99666 1765 aa34.3■■■■□ 3.08
LSM6-202ENST00000502781 EMILIN1Q9Y6C2 1016 aa34.29■■■■□ 3.08
LSM6-202ENST00000502781 POLKQ9UBT6 870 aa34.28■■■■□ 3.08
LSM6-202ENST00000502781 FLT4P35916 1363 aa34.27■■■■□ 3.08
LSM6-202ENST00000502781 TNNT2P45379 298 aaPredicted RBP34.26■■■■□ 3.08
LSM6-202ENST00000502781 CC2D1BQ5T0F9 858 aaKnown RBP34.26■■■■□ 3.08
LSM6-202ENST00000502781 PEAK1Q9H792 1746 aa34.26■■■■□ 3.08
LSM6-202ENST00000502781 ANKRD24Q8TF21 1146 aa34.24■■■■□ 3.07
LSM6-202ENST00000502781 TOM1L2Q6ZVM7 507 aa34.23■■■■□ 3.07
LSM6-202ENST00000502781 THRAP3Q9Y2W1 955 aaKnown RBP34.23■■■■□ 3.07
LSM6-202ENST00000502781 SMG6Q86US8 1419 aaKnown RBP34.23■■■■□ 3.07
LSM6-202ENST00000502781 INSRP06213 1382 aa34.23■■■■□ 3.07
LSM6-202ENST00000502781 BARGINQ6ZT62 677 aa34.23■■■■□ 3.07
LSM6-202ENST00000502781 TCP11L2Q8N4U5 519 aa34.23■■■■□ 3.07
LSM6-202ENST00000502781 CARD10Q9BWT7 1032 aa34.23■■■■□ 3.07
LSM6-202ENST00000502781 CSB-PGBD3P0DP91 1061 aa34.22■■■■□ 3.07
LSM6-202ENST00000502781 DDX10Q13206 875 aaKnown RBP34.22■■■■□ 3.07
LSM6-202ENST00000502781 FAM98CQ17RN3 349 aaKnown RBP34.22■■■■□ 3.07
LSM6-202ENST00000502781 HSP90AB2PQ58FF8 381 aa34.22■■■■□ 3.07
LSM6-202ENST00000502781 MAP2P11137 1827 aaKnown RBP34.21■■■■□ 3.07
LSM6-202ENST00000502781 ZNF316A6NFI3 1004 aaPredicted RBP34.21■■■■□ 3.07
LSM6-202ENST00000502781 USP35Q9P2H5 1018 aa34.21■■■■□ 3.07
LSM6-202ENST00000502781 SEPT12Q8IYM1 358 aa34.18■■■■□ 3.06
LSM6-202ENST00000502781 THSD7AQ9UPZ6 1657 aa34.17■■■■□ 3.06
LSM6-202ENST00000502781 PPM1GO15355 546 aaPredicted RBP34.15■■■■□ 3.06
LSM6-202ENST00000502781 LTV1Q96GA3 475 aaPredicted RBP34.15■■■■□ 3.06
LSM6-202ENST00000502781 NLRP2Q9NX02 1062 aa34.14■■■■□ 3.06
LSM6-202ENST00000502781 FAM208AQ9UK61 1670 aaKnown RBP34.12■■■■□ 3.05
LSM6-202ENST00000502781 DISP2A7MBM2 1401 aa34.11■■■■□ 3.05
LSM6-202ENST00000502781 CNGB1Q14028 1251 aaPredicted RBP34.09■■■■□ 3.05
LSM6-202ENST00000502781 CDCA7Q9BWT1 371 aaPredicted RBP34.08■■■■□ 3.05
LSM6-202ENST00000502781 MTHFSP49914 203 aa34.07■■■■□ 3.04
LSM6-202ENST00000502781 NBPF6Q5VWK0 638 aa34.07■■■■□ 3.04
LSM6-202ENST00000502781 NBPF4Q96M43 638 aa34.07■■■■□ 3.04
LSM6-202ENST00000502781 A0A0G2JS52 829 aa34.06■■■■□ 3.04
LSM6-202ENST00000502781 MYT1Q01538 1121 aa34.06■■■■□ 3.04
LSM6-202ENST00000502781 PARD3Q8TEW0 1356 aa34.05■■■■□ 3.04
LSM6-202ENST00000502781 EIF4A2Q14240 407 aaKnown RBP34.04■■■■□ 3.04
LSM6-202ENST00000502781 BRWD3Q6RI45 1802 aa34.04■■■■□ 3.04
LSM6-202ENST00000502781 NCAPD2Q15021 1401 aa34.02■■■■□ 3.04
LSM6-202ENST00000502781 PARP4Q9UKK3 1724 aaKnown RBP34.02■■■■□ 3.04
LSM6-202ENST00000502781 KRT27Q7Z3Y8 459 aa34.02■■■■□ 3.04
LSM6-202ENST00000502781 WNK3Q9BYP7 1800 aa34.02■■■■□ 3.04
LSM6-202ENST00000502781 RGPD2P0DJD1 1756 aa34■■■■□ 3.03
LSM6-202ENST00000502781 IL2RBP14784 551 aa33.99■■■■□ 3.03
LSM6-202ENST00000502781 SOCS7O14512 581 aa33.98■■■■□ 3.03
LSM6-202ENST00000502781 PPP2R1AP30153 589 aa33.98■■■■□ 3.03
LSM6-202ENST00000502781 EYA1Q99502 592 aa33.98■■■■□ 3.03
LSM6-202ENST00000502781 LRRC37A3O60309 1634 aa33.96■■■■□ 3.03
LSM6-202ENST00000502781 DDB1Q16531 1140 aa33.96■■■■□ 3.03
LSM6-202ENST00000502781 USHBP1Q8N6Y0 703 aa33.96■■■■□ 3.03
LSM6-202ENST00000502781 IL13P35225 146 aa33.95■■■■□ 3.02
LSM6-202ENST00000502781 IGSF1Q8N6C5 1336 aa33.94■■■■□ 3.02
LSM6-202ENST00000502781 RALBP1Q15311 655 aa33.93■■■■□ 3.02
LSM6-202ENST00000502781 COL3A1P02461 1466 aaPredicted RBP33.92■■■■□ 3.02
LSM6-202ENST00000502781 PDE3BQ13370 1112 aa33.92■■■■□ 3.02
LSM6-202ENST00000502781 MEGF6O75095 1541 aa33.92■■■■□ 3.02
LSM6-202ENST00000502781 TNS2Q63HR2 1409 aa33.92■■■■□ 3.02
LSM6-202ENST00000502781 EXOC5O00471 708 aa33.9■■■■□ 3.02
LSM6-202ENST00000502781 OVOS2A0A0G2JMS6 1433 aa33.89■■■■□ 3.02
LSM6-202ENST00000502781 RAPGEF4Q8WZA2 1011 aa33.87■■■■□ 3.01
LSM6-202ENST00000502781 DIAPH1O60610 1272 aaKnown RBP33.86■■■■□ 3.01
LSM6-202ENST00000502781 FAM182BQ5T319 152 aa33.86■■■■□ 3.01
LSM6-202ENST00000502781 RGPD1P0DJD0 1748 aa33.86■■■■□ 3.01
LSM6-202ENST00000502781 UPF1Q92900 1129 aaKnown RBP eCLIP33.85■■■■□ 3.01
LSM6-202ENST00000502781 MARCH10Q8NA82 808 aaPredicted RBP33.85■■■■□ 3.01
LSM6-202ENST00000502781 TATP17735 454 aaPredicted RBP33.84■■■■□ 3.01
LSM6-202ENST00000502781 PRKRIP1Q9H875 184 aaPredicted RBP33.84■■■■□ 3.01
LSM6-202ENST00000502781 FAM196AQ6ZSG2 479 aa33.83■■■■□ 3.01
LSM6-202ENST00000502781 CFAP53Q96M91 514 aa33.83■■■■□ 3.01
LSM6-202ENST00000502781 EP400Q96L91 3159 aa33.83■■■■□ 3.01
LSM6-202ENST00000502781 KDRP35968 1356 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 151.1 ms