RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 CCDC61Q9Y6R9 512 aa13.34□□□□□ -0.27
CCDC171-209ENST00000498725 USP19O94966 1318 aa13.34□□□□□ -0.27
CCDC171-209ENST00000498725 PPIP5K1Q6PFW1 1433 aa13.33□□□□□ -0.28
CCDC171-209ENST00000498725 DDB1Q16531 1140 aa13.33□□□□□ -0.28
CCDC171-209ENST00000498725 TOM1L2Q6ZVM7 507 aa13.33□□□□□ -0.28
CCDC171-209ENST00000498725 PLEKHG3A1L390 1219 aa13.32□□□□□ -0.28
CCDC171-209ENST00000498725 QRICH2Q9H0J4 1663 aa13.31□□□□□ -0.28
CCDC171-209ENST00000498725 CHD4Q14839 1912 aa13.31□□□□□ -0.28
CCDC171-209ENST00000498725 NLRP6P59044 892 aa13.31□□□□□ -0.28
CCDC171-209ENST00000498725 CABP2Q9NPB3 220 aa13.31□□□□□ -0.28
CCDC171-209ENST00000498725 COL18A1P39060 1754 aa13.3□□□□□ -0.28
CCDC171-209ENST00000498725 PLSCR1O15162 318 aa13.3□□□□□ -0.28
CCDC171-209ENST00000498725 SOX12O15370 315 aa13.3□□□□□ -0.28
CCDC171-209ENST00000498725 ZNF784Q8NCA9 323 aaPredicted RBP13.3□□□□□ -0.28
CCDC171-209ENST00000498725 PIK3C2AO00443 1686 aa13.29□□□□□ -0.28
CCDC171-209ENST00000498725 C11orf95C9JLR9 678 aaPredicted RBP13.29□□□□□ -0.28
CCDC171-209ENST00000498725 PROM2Q8N271 834 aa13.29□□□□□ -0.28
CCDC171-209ENST00000498725 MARCH10Q8NA82 808 aaPredicted RBP13.29□□□□□ -0.28
CCDC171-209ENST00000498725 KIAA1210Q9ULL0 1709 aa13.29□□□□□ -0.28
CCDC171-209ENST00000498725 SENP3-EIF4A1A0A087X0R7 540 aa13.28□□□□□ -0.28
CCDC171-209ENST00000498725 NBPF1Q3BBV0 1214 aa13.28□□□□□ -0.28
CCDC171-209ENST00000498725 FHDC1Q9C0D6 1143 aaPredicted RBP13.28□□□□□ -0.28
CCDC171-209ENST00000498725 STK32BQ9NY57 414 aa13.28□□□□□ -0.28
CCDC171-209ENST00000498725 CSB-PGBD3P0DP91 1061 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 PTGER2P43116 358 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 STAC3Q96MF2 364 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 AXIN2Q9Y2T1 843 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 AATKQ6ZMQ8 1374 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 SLIT3O75094 1523 aa13.27□□□□□ -0.29
CCDC171-209ENST00000498725 TXNRD1Q16881 649 aa13.26□□□□□ -0.29
CCDC171-209ENST00000498725 CABP1Q9NZU7 370 aa13.26□□□□□ -0.29
CCDC171-209ENST00000498725 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
CCDC171-209ENST00000498725 USP6P35125 1406 aa13.25□□□□□ -0.29
CCDC171-209ENST00000498725 WDR17Q8IZU2 1322 aa13.25□□□□□ -0.29
CCDC171-209ENST00000498725 SLC15A2Q16348 729 aa13.25□□□□□ -0.29
CCDC171-209ENST00000498725 SYT17Q9BSW7 474 aa13.25□□□□□ -0.29
CCDC171-209ENST00000498725 CENPJQ9HC77 1338 aaPredicted RBP13.24□□□□□ -0.29
CCDC171-209ENST00000498725 C1QBPQ07021 282 aaKnown RBP13.24□□□□□ -0.29
CCDC171-209ENST00000498725 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
CCDC171-209ENST00000498725 KLHL34Q8N239 644 aa13.23□□□□□ -0.29
CCDC171-209ENST00000498725 NHSQ6T4R5 1651 aa13.23□□□□□ -0.29
CCDC171-209ENST00000498725 CPSF1Q10570 1443 aaKnown RBP13.22□□□□□ -0.29
CCDC171-209ENST00000498725 EXOC5O00471 708 aa13.22□□□□□ -0.29
CCDC171-209ENST00000498725 MTFR1LQ9H019 292 aa13.22□□□□□ -0.29
CCDC171-209ENST00000498725 BTAF1O14981 1849 aa13.22□□□□□ -0.29
CCDC171-209ENST00000498725 PELP1Q8IZL8 1130 aaKnown RBP13.21□□□□□ -0.29
CCDC171-209ENST00000498725 BRD4O60885 1362 aaPredicted RBP13.2□□□□□ -0.3
CCDC171-209ENST00000498725 C1QTNF8P60827 252 aa13.2□□□□□ -0.3
CCDC171-209ENST00000498725 ARXQ96QS3 562 aa13.2□□□□□ -0.3
CCDC171-209ENST00000498725 CDCA7Q9BWT1 371 aaPredicted RBP13.2□□□□□ -0.3
CCDC171-209ENST00000498725 CARD10Q9BWT7 1032 aa13.2□□□□□ -0.3
CCDC171-209ENST00000498725 GPR162Q16538 588 aa13.19□□□□□ -0.3
CCDC171-209ENST00000498725 ARHGEF25Q86VW2 580 aa13.19□□□□□ -0.3
CCDC171-209ENST00000498725 LTN1O94822 1766 aa13.19□□□□□ -0.3
CCDC171-209ENST00000498725 TTC21BQ7Z4L5 1316 aa13.18□□□□□ -0.3
CCDC171-209ENST00000498725 TRPM1Q7Z4N2 1603 aa13.18□□□□□ -0.3
CCDC171-209ENST00000498725 SGIP1Q9BQI5 828 aa13.18□□□□□ -0.3
CCDC171-209ENST00000498725 PAPPAQ13219 1627 aa13.17□□□□□ -0.3
CCDC171-209ENST00000498725 BCL9O00512 1426 aa13.17□□□□□ -0.3
CCDC171-209ENST00000498725 TNS2Q63HR2 1409 aa13.17□□□□□ -0.3
CCDC171-209ENST00000498725 KCNH5Q8NCM2 988 aa13.17□□□□□ -0.3
CCDC171-209ENST00000498725 TUBGCP6Q96RT7 1819 aa13.17□□□□□ -0.3
CCDC171-209ENST00000498725 EVC2Q86UK5 1308 aa13.16□□□□□ -0.3
CCDC171-209ENST00000498725 ZNF827Q17R98 1081 aa13.16□□□□□ -0.3
CCDC171-209ENST00000498725 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
CCDC171-209ENST00000498725 NFAT5O94916 1531 aa13.16□□□□□ -0.3
CCDC171-209ENST00000498725 CCDC7Q96M83 1385 aa13.16□□□□□ -0.3
CCDC171-209ENST00000498725 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC171-209ENST00000498725 KTN1Q86UP2 1357 aaKnown RBP13.14□□□□□ -0.31
CCDC171-209ENST00000498725 ABCC6O95255 1503 aa13.13□□□□□ -0.31
CCDC171-209ENST00000498725 MON2Q7Z3U7 1717 aa13.13□□□□□ -0.31
CCDC171-209ENST00000498725 GIGYF1O75420 1035 aaPredicted RBP13.13□□□□□ -0.31
CCDC171-209ENST00000498725 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
CCDC171-209ENST00000498725 LRRC4BQ9NT99 713 aa13.13□□□□□ -0.31
CCDC171-209ENST00000498725 QSER1Q2KHR3 1735 aa13.13□□□□□ -0.31
CCDC171-209ENST00000498725 TTC21AQ8NDW8 1320 aa13.13□□□□□ -0.31
CCDC171-209ENST00000498725 KCNQ4P56696 695 aa13.12□□□□□ -0.31
CCDC171-209ENST00000498725 NCBP3Q53F19 620 aaKnown RBP13.12□□□□□ -0.31
CCDC171-209ENST00000498725 IL2RBP14784 551 aa13.11□□□□□ -0.31
CCDC171-209ENST00000498725 DOT1LQ8TEK3 1739 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 SHANK3Q9BYB0 1731 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 POLD1P28340 1107 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 NLGN2Q8NFZ4 835 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 DDX54Q8TDD1 881 aaKnown RBP13.1□□□□□ -0.31
CCDC171-209ENST00000498725 ANKRD24Q8TF21 1146 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 UTRNP46939 3433 aa13.1□□□□□ -0.31
CCDC171-209ENST00000498725 MAP3K5Q99683 1374 aa13.09□□□□□ -0.31
CCDC171-209ENST00000498725 NME9Q86XW9 330 aa13.09□□□□□ -0.31
CCDC171-209ENST00000498725 SYTL4Q96C24 671 aaPredicted RBP13.09□□□□□ -0.31
CCDC171-209ENST00000498725 RGPD2P0DJD1 1756 aa13.09□□□□□ -0.31
CCDC171-209ENST00000498725 ERBB3P21860 1342 aa13.09□□□□□ -0.31
CCDC171-209ENST00000498725 COL24A1Q17RW2 1714 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 IFFO2Q5TF58 517 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 L3MBTL2Q969R5 705 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 AKT1S1Q96B36 256 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 LTV1Q96GA3 475 aaPredicted RBP13.08□□□□□ -0.32
CCDC171-209ENST00000498725 TFCP2L1Q9NZI6 479 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 PNPLA7Q6ZV29 1317 aa13.08□□□□□ -0.32
CCDC171-209ENST00000498725 USP54Q70EL1 1684 aa13.07□□□□□ -0.32
CCDC171-209ENST00000498725 ROCK2O75116 1388 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms