RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 PNMA3Q9UL41 463 aa8.77□□□□□ -1.01
BRCA1-224ENST00000497488 DNAJC2Q99543 621 aaKnown RBP8.76□□□□□ -1.01
BRCA1-224ENST00000497488 BRPF3Q9ULD4 1205 aa8.76□□□□□ -1.01
BRCA1-224ENST00000497488 TMA7Q9Y2S6 64 aaKnown RBP8.76□□□□□ -1.01
BRCA1-224ENST00000497488 C21orf2O43822 256 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 COL9A1P20849 921 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 ECM1Q16610 540 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 CERS3Q8IU89 383 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 CXXC1Q9P0U4 656 aaPredicted RBP8.75□□□□□ -1.01
BRCA1-224ENST00000497488 LHX6Q9UPM6 363 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 ERBB3P21860 1342 aa8.75□□□□□ -1.01
BRCA1-224ENST00000497488 PRMT3O60678 531 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 OCLNQ16625 522 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 VARS2Q5ST30 1063 aaKnown RBP8.74□□□□□ -1.01
BRCA1-224ENST00000497488 LDLRAD1Q5T700 205 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 RGL4Q8IZJ4 473 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 OGFOD1Q8N543 542 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 TINF2Q9BSI4 451 aa8.74□□□□□ -1.01
BRCA1-224ENST00000497488 NOL8Q76FK4 1167 aaKnown RBP8.73□□□□□ -1.01
BRCA1-224ENST00000497488 CDAN1Q8IWY9 1227 aa8.73□□□□□ -1.01
BRCA1-224ENST00000497488 MARCH6O60337 910 aa8.72□□□□□ -1.01
BRCA1-224ENST00000497488 SLC10A3P09131 477 aa8.72□□□□□ -1.01
BRCA1-224ENST00000497488 ARHGAP4P98171 946 aa8.72□□□□□ -1.01
BRCA1-224ENST00000497488 SLFNL1Q499Z3 407 aa8.72□□□□□ -1.01
BRCA1-224ENST00000497488 METTL16Q86W50 562 aaKnown RBP8.72□□□□□ -1.01
BRCA1-224ENST00000497488 SLC43A3Q8NBI5 491 aa8.72□□□□□ -1.01
BRCA1-224ENST00000497488 ZNF594Q96JF6 807 aaPredicted RBP8.72□□□□□ -1.01
BRCA1-224ENST00000497488 TLDC2A0PJX2 215 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 CLDN10P78369 228 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 KCNH2Q12809 1159 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 NT5DC4Q86YG4 428 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 PLPP7Q8NBV4 271 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 SYMPKQ92797 1274 aaKnown RBP8.71□□□□□ -1.02
BRCA1-224ENST00000497488 CEP126Q9P2H0 1117 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 PRKAG2Q9UGJ0 569 aa8.71□□□□□ -1.02
BRCA1-224ENST00000497488 P4HBP07237 508 aaKnown RBP8.7□□□□□ -1.02
BRCA1-224ENST00000497488 PACS2Q86VP3 889 aa8.7□□□□□ -1.02
BRCA1-224ENST00000497488 PHTF2Q8N3S3 785 aa8.7□□□□□ -1.02
BRCA1-224ENST00000497488 GTF3C2Q8WUA4 911 aaPredicted RBP8.7□□□□□ -1.02
BRCA1-224ENST00000497488 DHX38Q92620 1227 aaKnown RBP8.7□□□□□ -1.02
BRCA1-224ENST00000497488 PRIMPOLQ96LW4 560 aa8.7□□□□□ -1.02
BRCA1-224ENST00000497488 DNAAF2Q9NVR5 837 aaKnown RBP8.7□□□□□ -1.02
BRCA1-224ENST00000497488 FKBPLQ9UIM3 349 aa8.7□□□□□ -1.02
BRCA1-224ENST00000497488 DKK1O94907 266 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 EML3Q32P44 896 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 GRIPAP1Q4V328 841 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 DESI1Q6ICB0 168 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 TRIM50Q86XT4 487 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 ARMC5Q96C12 935 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 NLRP2Q9NX02 1062 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.69□□□□□ -1.02
BRCA1-224ENST00000497488 DNMT3AQ9Y6K1 912 aaPredicted RBP8.69□□□□□ -1.02
BRCA1-224ENST00000497488 SBNO2Q9Y2G9 1366 aa8.69□□□□□ -1.02
BRCA1-224ENST00000497488 TRIM6-TRIM34B2RNG4 842 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 ATP2B1P20020 1258 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 ATP1A2P50993 1020 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 FKBP4Q02790 459 aaKnown RBP eCLIP8.68□□□□□ -1.02
BRCA1-224ENST00000497488 SF3B2Q13435 895 aaKnown RBP8.68□□□□□ -1.02
BRCA1-224ENST00000497488 CCDC144BQ3MJ40 725 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 LARGE2Q8N3Y3 721 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 TGIF2Q9GZN2 237 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 CHIC2Q9UKJ5 165 aa8.68□□□□□ -1.02
BRCA1-224ENST00000497488 SMAPO00193 183 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 FUT2Q10981 343 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 MAP7D1Q3KQU3 841 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 SDE2Q6IQ49 451 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 LYPD8Q6UX82 237 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 SIX5Q8N196 739 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 MICAL1Q8TDZ2 1067 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 KRTAP3-3Q9BYR6 98 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 KRTAP3-2Q9BYR7 98 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 SEPT3Q9UH03 358 aa8.67□□□□□ -1.02
BRCA1-224ENST00000497488 RAB11FIP3O75154 756 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 GTF2F1P35269 517 aaKnown RBP eCLIP8.66□□□□□ -1.024e-8■■■□□ 16.5
BRCA1-224ENST00000497488 EGFLAMQ63HQ2 1017 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 POTEEQ6S8J3 1075 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 RETREG3Q86VR2 466 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 ZNF687Q8N1G0 1237 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 TMEM87AQ8NBN3 555 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 ZNF592Q92610 1267 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 CCSER2Q9H7U1 834 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 TBX22Q9Y458 520 aa8.66□□□□□ -1.02
BRCA1-224ENST00000497488 FMNL1O95466 1100 aaPredicted RBP8.65□□□□□ -1.02
BRCA1-224ENST00000497488 SEC13P55735 322 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 TRAF7Q6Q0C0 670 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 CAPN10Q9HC96 672 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 METTL5Q9NRN9 209 aaKnown RBP8.65□□□□□ -1.02
BRCA1-224ENST00000497488 PCDH10Q9P2E7 1040 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 IQSEC3Q9UPP2 1182 aaPredicted RBP8.65□□□□□ -1.02
BRCA1-224ENST00000497488 KIAA1024Q9UPX6 916 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 NOD1Q9Y239 953 aa8.65□□□□□ -1.02
BRCA1-224ENST00000497488 ZBTB7BO15156 539 aaPredicted RBP8.64□□□□□ -1.03
BRCA1-224ENST00000497488 MCCD1P59942 119 aaPredicted RBP8.64□□□□□ -1.03
BRCA1-224ENST00000497488 FANCCQ00597 558 aa8.64□□□□□ -1.03
BRCA1-224ENST00000497488 MTMR3Q13615 1198 aa8.64□□□□□ -1.03
BRCA1-224ENST00000497488 GPATCH3Q96I76 525 aa8.64□□□□□ -1.03
BRCA1-224ENST00000497488 RBCK1Q9BYM8 510 aa8.64□□□□□ -1.03
BRCA1-224ENST00000497488 TMC7Q7Z402 723 aa8.63□□□□□ -1.03
BRCA1-224ENST00000497488 FAM9AQ8IZU1 332 aaPredicted RBP8.63□□□□□ -1.03
BRCA1-224ENST00000497488 RNF34Q969K3 372 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms