RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 USP54Q70EL1 1684 aa21.99■■□□□ 1.11
LIME1-209ENST00000494776 LMO7Q8WWI1 1683 aa21.99■■□□□ 1.11
LIME1-209ENST00000494776 SPATA31A1Q5TZJ5 1347 aa21.99■■□□□ 1.11
LIME1-209ENST00000494776 AXIN2Q9Y2T1 843 aa21.98■■□□□ 1.11
LIME1-209ENST00000494776 COL5A2P05997 1499 aaPredicted RBP21.97■■□□□ 1.11
LIME1-209ENST00000494776 ONECUT3O60422 494 aaPredicted RBP21.97■■□□□ 1.11
LIME1-209ENST00000494776 CSB-PGBD3P0DP91 1061 aa21.97■■□□□ 1.11
LIME1-209ENST00000494776 TOM1L2Q6ZVM7 507 aa21.96■■□□□ 1.11
LIME1-209ENST00000494776 PANK3Q9H999 370 aa21.96■■□□□ 1.11
LIME1-209ENST00000494776 TCP11L2Q8N4U5 519 aa21.95■■□□□ 1.1
LIME1-209ENST00000494776 CGNL1Q0VF96 1302 aa21.95■■□□□ 1.1
LIME1-209ENST00000494776 KIF7Q2M1P5 1343 aa21.94■■□□□ 1.1
LIME1-209ENST00000494776 CRB1P82279 1406 aa21.93■■□□□ 1.1
LIME1-209ENST00000494776 COL18A1P39060 1754 aa21.92■■□□□ 1.1
LIME1-209ENST00000494776 WDR17Q8IZU2 1322 aa21.92■■□□□ 1.1
LIME1-209ENST00000494776 AMPHP49418 695 aa21.92■■□□□ 1.1
LIME1-209ENST00000494776 KRT27Q7Z3Y8 459 aa21.92■■□□□ 1.1
LIME1-209ENST00000494776 THRAP3Q9Y2W1 955 aaKnown RBP21.92■■□□□ 1.1
LIME1-209ENST00000494776 KIF20BQ96Q89 1820 aa21.92■■□□□ 1.1
LIME1-209ENST00000494776 FBLN1P23142 703 aa21.91■■□□□ 1.1
LIME1-209ENST00000494776 BARGINQ6ZT62 677 aa21.91■■□□□ 1.1
LIME1-209ENST00000494776 ABCC6O95255 1503 aa21.9■■□□□ 1.1
LIME1-209ENST00000494776 LTN1O94822 1766 aa21.9■■□□□ 1.1
LIME1-209ENST00000494776 MAP3K19Q56UN5 1328 aa21.89■■□□□ 1.1
LIME1-209ENST00000494776 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.09
LIME1-209ENST00000494776 IP6K1Q92551 441 aa21.89■■□□□ 1.09
LIME1-209ENST00000494776 KNSTRNQ9Y448 316 aa21.88■■□□□ 1.09
LIME1-209ENST00000494776 RGPD5Q99666 1765 aa21.88■■□□□ 1.09
LIME1-209ENST00000494776 ANKRD24Q8TF21 1146 aa21.87■■□□□ 1.09
LIME1-209ENST00000494776 LTV1Q96GA3 475 aaPredicted RBP21.87■■□□□ 1.09
LIME1-209ENST00000494776 NLRP2Q9NX02 1062 aa21.87■■□□□ 1.09
LIME1-209ENST00000494776 BRWD3Q6RI45 1802 aa21.86■■□□□ 1.09
LIME1-209ENST00000494776 CARD10Q9BWT7 1032 aa21.86■■□□□ 1.09
LIME1-209ENST00000494776 ERBB3P21860 1342 aa21.85■■□□□ 1.09
LIME1-209ENST00000494776 HOXC9P31274 260 aa21.85■■□□□ 1.09
LIME1-209ENST00000494776 PDE3BQ13370 1112 aa21.85■■□□□ 1.09
LIME1-209ENST00000494776 BLMP54132 1417 aaPredicted RBP21.85■■□□□ 1.09
LIME1-209ENST00000494776 CCDC7Q96M83 1385 aa21.85■■□□□ 1.09
LIME1-209ENST00000494776 THSD7AQ9UPZ6 1657 aa21.84■■□□□ 1.09
LIME1-209ENST00000494776 WASHC2AQ641Q2 1341 aa21.82■■□□□ 1.08
LIME1-209ENST00000494776 PPM1GO15355 546 aaPredicted RBP21.82■■□□□ 1.08
LIME1-209ENST00000494776 TNNT2P45379 298 aaPredicted RBP21.82■■□□□ 1.08
LIME1-209ENST00000494776 RTL1A6NKG5 1358 aa21.82■■□□□ 1.08
LIME1-209ENST00000494776 FAM182BQ5T319 152 aa21.81■■□□□ 1.08
LIME1-209ENST00000494776 CCDC125Q86Z20 511 aa21.81■■□□□ 1.08
LIME1-209ENST00000494776 CDCA7Q9BWT1 371 aaPredicted RBP21.81■■□□□ 1.08
LIME1-209ENST00000494776 NSD2O96028 1365 aa21.8■■□□□ 1.08
LIME1-209ENST00000494776 SF3B2Q13435 895 aaKnown RBP21.79■■□□□ 1.08
LIME1-209ENST00000494776 DDB1Q16531 1140 aa21.79■■□□□ 1.08
LIME1-209ENST00000494776 MORC1Q86VD1 984 aa21.79■■□□□ 1.08
LIME1-209ENST00000494776 EMILIN1Q9Y6C2 1016 aa21.79■■□□□ 1.08
LIME1-209ENST00000494776 FLT4P35916 1363 aa21.78■■□□□ 1.08
LIME1-209ENST00000494776 SMG6Q86US8 1419 aaKnown RBP21.78■■□□□ 1.08
LIME1-209ENST00000494776 KIF24Q5T7B8 1368 aa21.77■■□□□ 1.08
LIME1-209ENST00000494776 ZEB1P37275 1124 aaPredicted RBP21.77■■□□□ 1.08
LIME1-209ENST00000494776 HSP90AB2PQ58FF8 381 aa21.76■■□□□ 1.07
LIME1-209ENST00000494776 FAM196AQ6ZSG2 479 aa21.76■■□□□ 1.07
LIME1-209ENST00000494776 EXOC5O00471 708 aa21.75■■□□□ 1.07
LIME1-209ENST00000494776 IL2RBP14784 551 aa21.75■■□□□ 1.07
LIME1-209ENST00000494776 ANKRD26Q9UPS8 1709 aa21.75■■□□□ 1.07
LIME1-209ENST00000494776 INSRP06213 1382 aa21.74■■□□□ 1.07
LIME1-209ENST00000494776 POLKQ9UBT6 870 aa21.74■■□□□ 1.07
LIME1-209ENST00000494776 PARP4Q9UKK3 1724 aaKnown RBP21.74■■□□□ 1.07
LIME1-209ENST00000494776 AMER1Q5JTC6 1135 aaPredicted RBP21.73■■□□□ 1.07
LIME1-209ENST00000494776 PER1O15534 1290 aaPredicted RBP21.72■■□□□ 1.07
LIME1-209ENST00000494776 CNGB1Q14028 1251 aaPredicted RBP21.72■■□□□ 1.07
LIME1-209ENST00000494776 CC2D1BQ5T0F9 858 aaKnown RBP21.72■■□□□ 1.07
LIME1-209ENST00000494776 FAM208AQ9UK61 1670 aaKnown RBP21.72■■□□□ 1.07
LIME1-209ENST00000494776 DISP2A7MBM2 1401 aa21.72■■□□□ 1.07
LIME1-209ENST00000494776 PEAK1Q9H792 1746 aa21.71■■□□□ 1.07
LIME1-209ENST00000494776 LRRC37A3O60309 1634 aa21.7■■□□□ 1.06
LIME1-209ENST00000494776 EP400Q96L91 3159 aa21.7■■□□□ 1.06
LIME1-209ENST00000494776 NBPF6Q5VWK0 638 aa21.7■■□□□ 1.06
LIME1-209ENST00000494776 NBPF4Q96M43 638 aa21.7■■□□□ 1.06
LIME1-209ENST00000494776 WNK3Q9BYP7 1800 aa21.7■■□□□ 1.06
LIME1-209ENST00000494776 MAP2P11137 1827 aaKnown RBP21.69■■□□□ 1.06
LIME1-209ENST00000494776 TRIM37O94972 964 aa21.69■■□□□ 1.06
LIME1-209ENST00000494776 USHBP1Q8N6Y0 703 aa21.68■■□□□ 1.06
LIME1-209ENST00000494776 OVOS2A0A0G2JMS6 1433 aa21.67■■□□□ 1.06
LIME1-209ENST00000494776 BAG6P46379 1132 aa21.67■■□□□ 1.06
LIME1-209ENST00000494776 MARCH10Q8NA82 808 aaPredicted RBP21.66■■□□□ 1.06
LIME1-209ENST00000494776 TNS2Q63HR2 1409 aa21.65■■□□□ 1.06
LIME1-209ENST00000494776 DEFB132Q7Z7B7 95 aa21.65■■□□□ 1.06
LIME1-209ENST00000494776 RAPGEF4Q8WZA2 1011 aa21.65■■□□□ 1.06
LIME1-209ENST00000494776 RGPD2P0DJD1 1756 aa21.64■■□□□ 1.06
LIME1-209ENST00000494776 NPC1L1Q9UHC9 1359 aa21.62■■□□□ 1.05
LIME1-209ENST00000494776 APBA3O96018 575 aa21.62■■□□□ 1.05
LIME1-209ENST00000494776 TATP17735 454 aaPredicted RBP21.62■■□□□ 1.05
LIME1-209ENST00000494776 EIF4A2Q14240 407 aaKnown RBP21.62■■□□□ 1.05
LIME1-209ENST00000494776 DDX54Q8TDD1 881 aaKnown RBP21.62■■□□□ 1.05
LIME1-209ENST00000494776 RGPD1P0DJD0 1748 aa21.62■■□□□ 1.05
LIME1-209ENST00000494776 ZCRB1Q8TBF4 217 aaKnown RBP21.61■■□□□ 1.05
LIME1-209ENST00000494776 EYA1Q99502 592 aa21.6■■□□□ 1.05
LIME1-209ENST00000494776 MTHFSP49914 203 aa21.59■■□□□ 1.05
LIME1-209ENST00000494776 EN1Q05925 392 aaPredicted RBP21.59■■□□□ 1.05
LIME1-209ENST00000494776 MEGF6O75095 1541 aa21.59■■□□□ 1.05
LIME1-209ENST00000494776 BCL9O00512 1426 aa21.56■■□□□ 1.04
LIME1-209ENST00000494776 ACSBG1Q96GR2 724 aa21.56■■□□□ 1.04
LIME1-209ENST00000494776 BCL11BQ9C0K0 894 aaPredicted RBP21.56■■□□□ 1.04
LIME1-209ENST00000494776 TNS1Q9HBL0 1735 aaKnown RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms