RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-216	ENST00000494503	SBF2	Q86WG5	1849 aa		13.76	□□□□□ -0.21
UBR4-216	ENST00000494503	C11orf95	C9JLR9	678 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-216	ENST00000494503	CPSF1	Q10570	1443 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-216	ENST00000494503	DCAF8L1	A6NGE4	600 aa		13.74	□□□□□ -0.21
UBR4-216	ENST00000494503	KCNH5	Q8NCM2	988 aa		13.74	□□□□□ -0.21
UBR4-216	ENST00000494503	KTN1	Q86UP2	1357 aa	Known RBP	13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	TTC21B	Q7Z4L5	1316 aa		13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	WDR17	Q8IZU2	1322 aa		13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	ZNF692	Q9BU19	519 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	SPON1	Q9HCB6	807 aa		13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	AXIN2	Q9Y2T1	843 aa		13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	COL18A1	P39060	1754 aa		13.73	□□□□□ -0.21
UBR4-216	ENST00000494503	TMC1	Q8TDI8	760 aa		13.72	□□□□□ -0.21
UBR4-216	ENST00000494503	PEAK1	Q9H792	1746 aa		13.72	□□□□□ -0.21
UBR4-216	ENST00000494503	TTC21A	Q8NDW8	1320 aa		13.7	□□□□□ -0.22
UBR4-216	ENST00000494503	KCNQ2	O43526	872 aa		13.7	□□□□□ -0.22
UBR4-216	ENST00000494503	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.7	□□□□□ -0.22
UBR4-216	ENST00000494503	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.7	□□□□□ -0.22
UBR4-216	ENST00000494503	RGPD4	Q7Z3J3	1758 aa		13.7	□□□□□ -0.22
UBR4-216	ENST00000494503	EXOC5	O00471	708 aa		13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	PTF1A	Q7RTS3	328 aa		13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	ARHGEF25	Q86VW2	580 aa		13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	MARCH10	Q8NA82	808 aa	Predicted RBP	13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	CARD11	Q9BXL7	1154 aa		13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	MON2	Q7Z3U7	1717 aa		13.69	□□□□□ -0.22
UBR4-216	ENST00000494503	LTN1	O94822	1766 aa		13.68	□□□□□ -0.22
UBR4-216	ENST00000494503	YY1	P25490	414 aa		13.68	□□□□□ -0.22
UBR4-216	ENST00000494503	CARD10	Q9BWT7	1032 aa		13.68	□□□□□ -0.22
UBR4-216	ENST00000494503	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.68	□□□□□ -0.22
UBR4-216	ENST00000494503	NLRP2	Q9NX02	1062 aa		13.68	□□□□□ -0.22
UBR4-216	ENST00000494503	PLSCR1	O15162	318 aa		13.67	□□□□□ -0.22
UBR4-216	ENST00000494503	ZBTB7A	O95365	584 aa		13.67	□□□□□ -0.22
UBR4-216	ENST00000494503	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.67	□□□□□ -0.22
UBR4-216	ENST00000494503	NFAT5	O94916	1531 aa		13.66	□□□□□ -0.22
UBR4-216	ENST00000494503	NME9	Q86XW9	330 aa		13.66	□□□□□ -0.22
UBR4-216	ENST00000494503	ACSBG1	Q96GR2	724 aa		13.66	□□□□□ -0.22
UBR4-216	ENST00000494503	STK32B	Q9NY57	414 aa		13.66	□□□□□ -0.22
UBR4-216	ENST00000494503	CCDC7	Q96M83	1385 aa		13.66	□□□□□ -0.22
UBR4-216	ENST00000494503	TONSL	Q96HA7	1378 aa		13.65	□□□□□ -0.22
UBR4-216	ENST00000494503	TNS2	Q63HR2	1409 aa		13.64	□□□□□ -0.23
UBR4-216	ENST00000494503	NINL	Q9Y2I6	1382 aa		13.64	□□□□□ -0.23
UBR4-216	ENST00000494503	TXNRD1	Q16881	649 aa		13.64	□□□□□ -0.23
UBR4-216	ENST00000494503	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.64	□□□□□ -0.23
UBR4-216	ENST00000494503	LTV1	Q96GA3	475 aa	Predicted RBP	13.63	□□□□□ -0.23
UBR4-216	ENST00000494503	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.63	□□□□□ -0.23
UBR4-216	ENST00000494503	CASZ1	Q86V15	1759 aa		13.63	□□□□□ -0.23
UBR4-216	ENST00000494503	ANKRD24	Q8TF21	1146 aa		13.62	□□□□□ -0.23
UBR4-216	ENST00000494503	SLC12A5	Q9H2X9	1139 aa		13.62	□□□□□ -0.23
UBR4-216	ENST00000494503	MYOM1	P52179	1685 aa		13.62	□□□□□ -0.23
UBR4-216	ENST00000494503	NHS	Q6T4R5	1651 aa		13.62	□□□□□ -0.23
UBR4-216	ENST00000494503	ERBB3	P21860	1342 aa		13.62	□□□□□ -0.23
UBR4-216	ENST00000494503	ABCC6	O95255	1503 aa		13.61	□□□□□ -0.23
UBR4-216	ENST00000494503	IL2RB	P14784	551 aa		13.61	□□□□□ -0.23
UBR4-216	ENST00000494503	TERF2IP	Q9NYB0	399 aa		13.61	□□□□□ -0.23
UBR4-216	ENST00000494503	PROM2	Q8N271	834 aa		13.6	□□□□□ -0.23
UBR4-216	ENST00000494503	BTAF1	O14981	1849 aa		13.6	□□□□□ -0.23
UBR4-216	ENST00000494503	SBNO2	Q9Y2G9	1366 aa		13.59	□□□□□ -0.23
UBR4-216	ENST00000494503	BCL9	O00512	1426 aa		13.59	□□□□□ -0.23
UBR4-216	ENST00000494503	EDC4	Q6P2E9	1401 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-216	ENST00000494503	SLC15A2	Q16348	729 aa		13.59	□□□□□ -0.23
UBR4-216	ENST00000494503	DDX54	Q8TDD1	881 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-216	ENST00000494503	CD163L1	Q9NR16	1453 aa		13.59	□□□□□ -0.23
UBR4-216	ENST00000494503		A0A1W2PP64	1363 aa		13.58	□□□□□ -0.23
UBR4-216	ENST00000494503	USP31	Q70CQ4	1352 aa		13.58	□□□□□ -0.23
UBR4-216	ENST00000494503	KLHL34	Q8N239	644 aa		13.58	□□□□□ -0.24
UBR4-216	ENST00000494503	SYTL4	Q96C24	671 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-216	ENST00000494503	USP54	Q70EL1	1684 aa		13.58	□□□□□ -0.24
UBR4-216	ENST00000494503	AMPH	P49418	695 aa		13.56	□□□□□ -0.24
UBR4-216	ENST00000494503	COG3	Q96JB2	828 aa		13.56	□□□□□ -0.24
UBR4-216	ENST00000494503	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-216	ENST00000494503	MTFR1L	Q9H019	292 aa		13.56	□□□□□ -0.24
UBR4-216	ENST00000494503	FAM208A	Q9UK61	1670 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-216	ENST00000494503	PTGER2	P43116	358 aa		13.54	□□□□□ -0.24
UBR4-216	ENST00000494503	RGPD2	P0DJD1	1756 aa		13.53	□□□□□ -0.24
UBR4-216	ENST00000494503	ST20-MTHFS	A0A0A6YYL1	179 aa		13.53	□□□□□ -0.24
UBR4-216	ENST00000494503	IP6K1	Q92551	441 aa		13.53	□□□□□ -0.24
UBR4-216	ENST00000494503	DOT1L	Q8TEK3	1739 aa		13.53	□□□□□ -0.24
UBR4-216	ENST00000494503	PELP1	Q8IZL8	1130 aa	Known RBP	13.52	□□□□□ -0.25
UBR4-216	ENST00000494503	ARX	Q96QS3	562 aa		13.52	□□□□□ -0.25
UBR4-216	ENST00000494503	SYT17	Q9BSW7	474 aa		13.52	□□□□□ -0.25
UBR4-216	ENST00000494503	MSH5	O43196	834 aa		13.51	□□□□□ -0.25
UBR4-216	ENST00000494503	FBLN1	P23142	703 aa		13.51	□□□□□ -0.25
UBR4-216	ENST00000494503	ZNF827	Q17R98	1081 aa		13.51	□□□□□ -0.25
UBR4-216	ENST00000494503	PAPPA	Q13219	1627 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	MAP3K19	Q56UN5	1328 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	HOXC9	P31274	260 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	KCNQ4	P56696	695 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	TFCP2L1	Q9NZI6	479 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	CHD4	Q14839	1912 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	UTRN	P46939	3433 aa		13.5	□□□□□ -0.25
UBR4-216	ENST00000494503	SMG6	Q86US8	1419 aa	Known RBP	13.49	□□□□□ -0.25
UBR4-216	ENST00000494503	POLD1	P28340	1107 aa		13.49	□□□□□ -0.25
UBR4-216	ENST00000494503	PRIM1	P49642	420 aa	Known RBP	13.49	□□□□□ -0.25
UBR4-216	ENST00000494503	RRS1	Q15050	365 aa	Known RBP	13.49	□□□□□ -0.25
UBR4-216	ENST00000494503	LRRC4B	Q9NT99	713 aa		13.49	□□□□□ -0.25
UBR4-216	ENST00000494503	GPR162	Q16538	588 aa		13.48	□□□□□ -0.25
UBR4-216	ENST00000494503	SLC27A3	Q5K4L6	730 aa		13.48	□□□□□ -0.25
UBR4-216	ENST00000494503	USHBP1	Q8N6Y0	703 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms