RNA–Protein interactions for RNA: ENST00000494083.1

CDC42EP3-205, Transcript of CDC42 effector protein 3, humanhuman

TSL 2

Gene CDC42EP3, Length 3,726 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3-205ENST00000494083 SNRKQ9NRH2 765 aa4.65□□□□□ -1.66
CDC42EP3-205ENST00000494083 LCE2AQ5TA79 106 aaPredicted RBP4.65□□□□□ -1.67
CDC42EP3-205ENST00000494083 C6orf118Q5T5N4 469 aa4.64□□□□□ -1.67
CDC42EP3-205ENST00000494083 CBLBQ13191 982 aa4.64□□□□□ -1.67
CDC42EP3-205ENST00000494083 FBXO45P0C2W1 286 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 MRPL14Q6P1L8 145 aaKnown RBP4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 PDXDC2PQ6P474 469 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 SLC10A4Q96EP9 437 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 TRMT44Q8IYL2 757 aaKnown RBP4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 NFX1Q12986 1120 aaKnown RBP4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 INTS6LQ5JSJ4 861 aaKnown RBP4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 ZBTB33Q86T24 672 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 MPNDQ8N594 471 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 ARMC2Q8NEN0 867 aa4.63□□□□□ -1.67
CDC42EP3-205ENST00000494083 PPP1R26Q5T8A7 1209 aaPredicted RBP4.62□□□□□ -1.67
CDC42EP3-205ENST00000494083 KCTD15Q96SI1 283 aaPredicted RBP4.62□□□□□ -1.67
CDC42EP3-205ENST00000494083 TMPRSS4Q9NRS4 437 aa4.62□□□□□ -1.67
CDC42EP3-205ENST00000494083 CCDC116Q8IYX3 515 aa4.62□□□□□ -1.67
CDC42EP3-205ENST00000494083 NR5A1Q13285 461 aa4.62□□□□□ -1.67
CDC42EP3-205ENST00000494083 LINC00528Q8N1L1 170 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 MEIOBQ8N635 442 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 MAP4K5Q9Y4K4 846 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 AGBL1Q96MI9 1066 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 TBC1D2BQ9UPU7 963 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 PRDM2Q13029 1718 aa4.61□□□□□ -1.67
CDC42EP3-205ENST00000494083 GPKOWQ92917 476 aaPredicted RBP eCLIP4.6□□□□□ -1.67
CDC42EP3-205ENST00000494083 ZNF784Q8NCA9 323 aaPredicted RBP4.6□□□□□ -1.67
CDC42EP3-205ENST00000494083 PEG3Q9GZU2 1588 aa4.6□□□□□ -1.67
CDC42EP3-205ENST00000494083 DNMT3LQ9UJW3 386 aa4.6□□□□□ -1.67
CDC42EP3-205ENST00000494083 BMP2P12643 396 aa4.59□□□□□ -1.67
CDC42EP3-205ENST00000494083 TMEM259Q4ZIN3 620 aa4.59□□□□□ -1.67
CDC42EP3-205ENST00000494083 PTK2Q05397 1052 aa4.59□□□□□ -1.67
CDC42EP3-205ENST00000494083 ERBB4Q15303 1308 aa4.59□□□□□ -1.67
CDC42EP3-205ENST00000494083 ERVH48-1M5A8F1 160 aa4.59□□□□□ -1.68
CDC42EP3-205ENST00000494083 RELBQ01201 579 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 KDF1Q8NAX2 398 aaPredicted RBP4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 SENP2Q9HC62 589 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 ADD1P35611 737 aaKnown RBP4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 TREML4Q6UXN2 200 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 BAZ1AQ9NRL2 1556 aaPredicted RBP4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 WFS1O76024 890 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 SCTRP47872 440 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 NBPF20Q3BBV1 942 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 ZNF395Q9H8N7 513 aaPredicted RBP4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 CYLDQ9NQC7 956 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 PCDHB9Q9Y5E1 797 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 EMILIN1Q9Y6C2 1016 aa4.58□□□□□ -1.68
CDC42EP3-205ENST00000494083 ZC3H4Q9UPT8 1303 aaKnown RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 ZBBXA8MT70 800 aa4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 TERTO14746 1132 aaKnown RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 DZIP3Q86Y13 1208 aaKnown RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 RB1CC1Q8TDY2 1594 aa4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 FIGNL2A6NMB9 653 aa4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 LILRA1O75019 489 aa4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 GIGYF1O75420 1035 aaPredicted RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 INSM2Q96T92 566 aaPredicted RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 MAN1A2O60476 641 aa4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 CTSOP43234 321 aaPredicted RBP4.57□□□□□ -1.68
CDC42EP3-205ENST00000494083 SCARF1Q14162 830 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 Q6ZVU0 165 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 GDPD2Q9HCC8 539 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 GPSM3Q9Y4H4 160 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 KIFC2Q96AC6 838 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 IRF5Q13568 498 aa4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 NXF1Q9UBU9 619 aaKnown RBP4.56□□□□□ -1.68
CDC42EP3-205ENST00000494083 SOS2Q07890 1332 aaPredicted RBP4.55□□□□□ -1.68
CDC42EP3-205ENST00000494083 ESPNB1AK53 854 aa4.55□□□□□ -1.68
CDC42EP3-205ENST00000494083 MCM6Q14566 821 aa4.55□□□□□ -1.68
CDC42EP3-205ENST00000494083 STAU1O95793 577 aaKnown RBP4.55□□□□□ -1.68
CDC42EP3-205ENST00000494083 NDUFB9Q9Y6M9 179 aa4.55□□□□□ -1.68
CDC42EP3-205ENST00000494083 TTLL8A6PVC2 850 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 TSGA10IPQ3SY00 556 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 VAC14Q08AM6 782 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 POM121Q96HA1 1249 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 TSEN34Q9BSV6 310 aaKnown RBP4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 SPINT1O43278 529 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 BANK1Q8NDB2 785 aa4.54□□□□□ -1.68
CDC42EP3-205ENST00000494083 UPP2O95045 317 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 NR1H3Q13133 447 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 CDCA7Q9BWT1 371 aaPredicted RBP4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 PGPEP1Q9NXJ5 209 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 SHROOM4Q9ULL8 1493 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 GMPRP36959 345 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 RAB6BQ9NRW1 208 aa4.53□□□□□ -1.68
CDC42EP3-205ENST00000494083 H3BM21 787 aa4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 ABL2P42684 1182 aa4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 PTSQ03393 145 aa4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 FOXD4L5Q5VV16 416 aaPredicted RBP4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 CDV3Q9UKY7 258 aaKnown RBP4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 ADH1AP07327 375 aa4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 POLMQ9NP87 494 aaPredicted RBP4.52□□□□□ -1.69
CDC42EP3-205ENST00000494083 SENP3-EIF4A1A0A087X0R7 540 aa4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 DHX9Q08211 1270 aaKnown RBP4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 PNMA1Q8ND90 353 aa4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 RNF217Q8TC41 542 aa4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 CCDC85AQ96PX6 553 aaPredicted RBP4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 PCDHB11Q9Y5F2 797 aa4.51□□□□□ -1.69
CDC42EP3-205ENST00000494083 ARHGEF10LQ9HCE6 1279 aa4.5□□□□□ -1.69
CDC42EP3-205ENST00000494083 PPFIA3O75145 1194 aa4.5□□□□□ -1.69
CDC42EP3-205ENST00000494083 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms