RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 AATKQ6ZMQ8 1374 aa16.47■□□□□ 0.23
COL6A3-213ENST00000493475 TTC21AQ8NDW8 1320 aa16.46■□□□□ 0.23
COL6A3-213ENST00000493475 EZH2Q15910 746 aaKnown RBP16.46■□□□□ 0.23
COL6A3-213ENST00000493475 COL5A2P05997 1499 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-213ENST00000493475 KCNA4P22459 653 aa16.45■□□□□ 0.22
COL6A3-213ENST00000493475 TRPM1Q7Z4N2 1603 aa16.45■□□□□ 0.22
COL6A3-213ENST00000493475 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 CSB-PGBD3P0DP91 1061 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 DDB1Q16531 1140 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 CAMKK2Q96RR4 588 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 OVOS2A0A0G2JMS6 1433 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 OVOS2A0A0J9YW53 1432 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 OVOS2Q6IE36 1432 aa16.44■□□□□ 0.22
COL6A3-213ENST00000493475 SIN3AQ96ST3 1273 aa16.43■□□□□ 0.22
COL6A3-213ENST00000493475 SLIT3O75094 1523 aa16.43■□□□□ 0.22
COL6A3-213ENST00000493475 TNS1Q9HBL0 1735 aaKnown RBP16.42■□□□□ 0.22
COL6A3-213ENST00000493475 KTN1Q86UP2 1357 aaKnown RBP16.42■□□□□ 0.22
COL6A3-213ENST00000493475 TTC21BQ7Z4L5 1316 aa16.42■□□□□ 0.22
COL6A3-213ENST00000493475 WDR17Q8IZU2 1322 aa16.42■□□□□ 0.22
COL6A3-213ENST00000493475 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
COL6A3-213ENST00000493475 CARD11Q9BXL7 1154 aa16.41■□□□□ 0.22
COL6A3-213ENST00000493475 TONSLQ96HA7 1378 aa16.4■□□□□ 0.22
COL6A3-213ENST00000493475 CPSF1Q10570 1443 aaKnown RBP16.4■□□□□ 0.22
COL6A3-213ENST00000493475 HDGFL2Q7Z4V5 671 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-213ENST00000493475 SBNO2Q9Y2G9 1366 aa16.39■□□□□ 0.21
COL6A3-213ENST00000493475 PARP4Q9UKK3 1724 aaKnown RBP16.39■□□□□ 0.21
COL6A3-213ENST00000493475 SOX12O15370 315 aa16.39■□□□□ 0.21
COL6A3-213ENST00000493475 ARHGEF25Q86VW2 580 aa16.38■□□□□ 0.21
COL6A3-213ENST00000493475 ABCB7O75027 752 aa16.37■□□□□ 0.21
COL6A3-213ENST00000493475 TMC1Q8TDI8 760 aa16.37■□□□□ 0.21
COL6A3-213ENST00000493475 CARD10Q9BWT7 1032 aa16.37■□□□□ 0.21
COL6A3-213ENST00000493475 TERF2IPQ9NYB0 399 aa16.37■□□□□ 0.21
COL6A3-213ENST00000493475 PPP1R1BQ9UD71 204 aaPredicted RBP16.37■□□□□ 0.21
COL6A3-213ENST00000493475 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
COL6A3-213ENST00000493475 EXOC5O00471 708 aa16.36■□□□□ 0.21
COL6A3-213ENST00000493475 PIK3C2AO00443 1686 aa16.36■□□□□ 0.21
COL6A3-213ENST00000493475 ABCC6O95255 1503 aa16.35■□□□□ 0.21
COL6A3-213ENST00000493475 PLSCR1O15162 318 aa16.35■□□□□ 0.21
COL6A3-213ENST00000493475 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-213ENST00000493475 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL6A3-213ENST00000493475 SPON1Q9HCB6 807 aa16.34■□□□□ 0.21
COL6A3-213ENST00000493475 PUS7Q96PZ0 661 aaKnown RBP16.33■□□□□ 0.2
COL6A3-213ENST00000493475 AKAP12Q02952 1782 aa16.32■□□□□ 0.2
COL6A3-213ENST00000493475 RREB1Q92766 1687 aa16.32■□□□□ 0.2
COL6A3-213ENST00000493475 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
COL6A3-213ENST00000493475 AXIN2Q9Y2T1 843 aa16.32■□□□□ 0.2
COL6A3-213ENST00000493475 LRRC37A3O60309 1634 aa16.31■□□□□ 0.2
COL6A3-213ENST00000493475 BCL9O00512 1426 aa16.31■□□□□ 0.2
COL6A3-213ENST00000493475 NINLQ9Y2I6 1382 aa16.31■□□□□ 0.2
COL6A3-213ENST00000493475 EDC4Q6P2E9 1401 aaKnown RBP16.3■□□□□ 0.2
COL6A3-213ENST00000493475 USP31Q70CQ4 1352 aa16.3■□□□□ 0.2
COL6A3-213ENST00000493475 NLRP2Q9NX02 1062 aa16.3■□□□□ 0.2
COL6A3-213ENST00000493475 RGPD3A6NKT7 1758 aaPredicted RBP16.29■□□□□ 0.2
COL6A3-213ENST00000493475 RGPD4Q7Z3J3 1758 aa16.29■□□□□ 0.2
COL6A3-213ENST00000493475 NUP188Q5SRE5 1749 aa16.28■□□□□ 0.2
COL6A3-213ENST00000493475 KCNQ2O43526 872 aa16.28■□□□□ 0.2
COL6A3-213ENST00000493475 NFAT5O94916 1531 aa16.28■□□□□ 0.2
COL6A3-213ENST00000493475 COL18A1P39060 1754 aa16.28■□□□□ 0.2
COL6A3-213ENST00000493475 ERBB3P21860 1342 aa16.27■□□□□ 0.2
COL6A3-213ENST00000493475 IL2RBP14784 551 aa16.27■□□□□ 0.2
COL6A3-213ENST00000493475 MARCH10Q8NA82 808 aaPredicted RBP16.27■□□□□ 0.2
COL6A3-213ENST00000493475 STK32BQ9NY57 414 aa16.27■□□□□ 0.2
COL6A3-213ENST00000493475 MON2Q7Z3U7 1717 aa16.27■□□□□ 0.19
COL6A3-213ENST00000493475 TNS2Q63HR2 1409 aa16.27■□□□□ 0.19
COL6A3-213ENST00000493475 PEAK1Q9H792 1746 aa16.26■□□□□ 0.19
COL6A3-213ENST00000493475 NME9Q86XW9 330 aa16.26■□□□□ 0.19
COL6A3-213ENST00000493475 WNK3Q9BYP7 1800 aa16.25■□□□□ 0.19
COL6A3-213ENST00000493475 SLC12A5Q9H2X9 1139 aa16.25■□□□□ 0.19
COL6A3-213ENST00000493475 ANKRD24Q8TF21 1146 aa16.24■□□□□ 0.19
COL6A3-213ENST00000493475 COG3Q96JB2 828 aa16.24■□□□□ 0.19
COL6A3-213ENST00000493475 CDCA8Q53HL2 280 aa16.23■□□□□ 0.19
COL6A3-213ENST00000493475 A0A1W2PP64 1363 aa16.23■□□□□ 0.19
COL6A3-213ENST00000493475 TXNRD1Q16881 649 aa16.22■□□□□ 0.19
COL6A3-213ENST00000493475 USP54Q70EL1 1684 aa16.21■□□□□ 0.19
COL6A3-213ENST00000493475 CD163L1Q9NR16 1453 aa16.21■□□□□ 0.19
COL6A3-213ENST00000493475 AMPHP49418 695 aa16.2■□□□□ 0.18
COL6A3-213ENST00000493475 TMF1P82094 1093 aa16.2■□□□□ 0.18
COL6A3-213ENST00000493475 IP6K1Q92551 441 aa16.2■□□□□ 0.18
COL6A3-213ENST00000493475 SBF2Q86WG5 1849 aa16.19■□□□□ 0.18
COL6A3-213ENST00000493475 ST20-MTHFSA0A0A6YYL1 179 aa16.19■□□□□ 0.18
COL6A3-213ENST00000493475 SLC15A2Q16348 729 aa16.19■□□□□ 0.18
COL6A3-213ENST00000493475 RGPD5Q99666 1765 aa16.18■□□□□ 0.18
COL6A3-213ENST00000493475 HMGB2P26583 209 aaKnown RBP16.18■□□□□ 0.18
COL6A3-213ENST00000493475 ANO8Q9HCE9 1232 aaPredicted RBP16.18■□□□□ 0.18
COL6A3-213ENST00000493475 SMG6Q86US8 1419 aaKnown RBP16.18■□□□□ 0.18
COL6A3-213ENST00000493475 YY1P25490 414 aa16.17■□□□□ 0.18
COL6A3-213ENST00000493475 ACSBG1Q96GR2 724 aa16.17■□□□□ 0.18
COL6A3-213ENST00000493475 LTN1O94822 1766 aa16.17■□□□□ 0.18
COL6A3-213ENST00000493475 ANKRD36BQ8N2N9 1353 aa16.16■□□□□ 0.18
COL6A3-213ENST00000493475 TRIM26Q12899 539 aaPredicted RBP16.16■□□□□ 0.18
COL6A3-213ENST00000493475 LTV1Q96GA3 475 aaPredicted RBP16.16■□□□□ 0.18
COL6A3-213ENST00000493475 MTFR1LQ9H019 292 aa16.16■□□□□ 0.18
COL6A3-213ENST00000493475 NHSQ6T4R5 1651 aa16.15■□□□□ 0.18
COL6A3-213ENST00000493475 FAM208AQ9UK61 1670 aaKnown RBP16.15■□□□□ 0.18
COL6A3-213ENST00000493475 ZBTB7AO95365 584 aa16.15■□□□□ 0.18
COL6A3-213ENST00000493475 PTF1AQ7RTS3 328 aa16.15■□□□□ 0.18
COL6A3-213ENST00000493475 PROM2Q8N271 834 aa16.15■□□□□ 0.18
COL6A3-213ENST00000493475 DDX54Q8TDD1 881 aaKnown RBP16.15■□□□□ 0.18
COL6A3-213ENST00000493475 TESK2Q96S53 571 aa16.15■□□□□ 0.18
COL6A3-213ENST00000493475 RTL1A6NKG5 1358 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms